RNA id: XM_043239971.1


Basic Information

Item Value
RNA id XM_043239971.1
length 2321
RNA type mRNA
GC content 0.42
exon number 8
gene id prps1a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11382680 ~ 11388895 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTACGATGGCACATAGTGGCTTTGCTGCGCGGACGAATCCGAATCAGAAGAGACAACCGGCACCAGGCCTTCATCACTTACtttaaaaaggttaaacacTAATTTAGAGAGATCATTTTTgcttacagtgttttttaaaaacactgtacaCCATCCCGACACTATAGGCACCACGGATCAGCCCAGAATGCCaaacattaagatattttcagGCAGTTCGCATCCGGATCTGTCGCAGAAGATCGCGGACCGACTGGGACTCGAACTGGGAAAAGTGGTCACCAAAAAATTCAGCAATCAGGAAACCTGTGTAGAGATAGGAGAGAGTGTGCGTGGAGAAGATGTCTATATTGTCCAGAGTGGCTGTGGCGAAATAAACGACaatctcatggagctgctgatCATGATCAATGCCTGTAAGATTGCATCGGCCTCCAGAGTCACGGCGGTTATTCCTTGTTTCCCCTACGCTCGGCAGGACAAGAAGGACAAGAGTCGGGCTCCGATCTCAGCCAAGCTGGTCGCCAACATGCTGTCTGTAGCCGGAGCAGACCACATCATCACCATGGACCTTCATGCATCTCAAATTCAGGGGTTCTTTGACATCCCAGTTGATAACTTGTATGCTGAGCCGGCAGTCCTCAAATggataaaagaaaacatcaatGAATGGAAGAATTGCACCATTGTTTCTCCTGATGCCGGTGGAGCCAAGAGGTGTGGAGGagtGACATCCATCGCAGACCGACTGAATGTGGACTTTGCCCTAATCCATAAGGAACGTAAGAAGGCCAATGAAGTGGATCGTATGGTGCTGGTTGGGGACGTGAAGGACCGAGTGGCGATTTTAGTGGATGACATGGCAGACACGTGTGGGACAATATGTCACGCGGCTGACAAATTGGTGTCTGCGGGAGCCACTAAAGTGTACGCCATCTTGACTCATGGGATCTTCTCCGGGCCAGCCATTTCTCGGATCAACAATGCCAACTTTGAGGCGGTTGTGGTCACCAACACAATTCCACAGGAGGACAAAATCAAACACTGCAGCAAGATTCAGGTGATTGACATTTCTATGATCCTGGCTGAAGCCATCAGGCGAACGCATAACGGGGAGTCAGTTTCATACTTGTTTAGTCATGTCCCCTTATAACACGAACATACATGcgtgtaaacaaacaaacaaacacataccaTCACTGTGTACAAACTCATATAACAGAGAATCATTGCTGGCTCTGTTAATCCATGTTCCTTACATGCACCATTTAACTGAAGACATATTTTGGACAGTGAATAAAAAGAACGAAAGCCCTTAGTGCTACACATCTTTTTCTGCTGCATGCGCTGACTCACCTTTTATTCCCAAAGGTATTGTGATATGTAACGACCGCTAAAATCTTGATTTCCATTCACTCTCCACTCACTGTATTTCACCTGTCACTCTAGGATATATAAATGTTACCTGCATGTTGAGGACTAAGGATTCACTTGAATGTTGCTGTCTGTTATTTCTGCTTTAAAGAGACTTTAAAACCAACAGTTAGATGACAGCCCTTGCTTATAATGAAAGATATCCTTTAATACTGGATTTTATTGCTTTCAAGTTTGTTGTGAAACTTAAAGGTACGATAGAtgtttatgactttttttgtaacaCCTTAGTTTTGTTATAGAGTCTAATTACTAACACGTGGCTAGATTGAAATAGAATATGGGTTGAGCCCCTCTAGATTGCCATTATTATGGCAgctggttttttttcttttgccttctcaggttttagttttgtttttgtttttttctcctgtgtagctttattaatttacatcTCTTTGTGGTCTTTTGACTGGGTGAAAGCCAAAATCTGAAAttaggtcattttttttttttttttaaagttgtgaCGAAgtttcttttatgtttgtttatgtttacagtTAGGCAGCATTTTTGACTGCTTGAACACAGATCTGTGAAGTGCCCTTTAGATTTGACTGAATACACGCGCATACACTTAATTTAGTGGCTACTGTCGAAATGGCCCAAACAATCAGCCTGTTGaactatatttttgttttgtttgtttttttttgcttatctCTGTGGGTCAGTGTGTTTCTTCTTGGGGTAGGTTTGTCCATGCCACTCGAGCGAGATCAGAGATAATACACCTAACTATCCTACATATTACACTGGAGCAGTAAGATGACAGAGCTTGATTTGATAGGTCTATGCCGTTTGCCTTAACGAATGAGAAAATACTGATTGTATCTTGTCTGAATGCGGAAtgagtaaaatatttcattgtatGAACTGCA

Function

GO:

id name namespace
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0004749 ribose phosphate diphosphokinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52196 lncRNA downstream 52314 11304281 ~ 11330366 (-) False G35434
TU52195 lncRNA downstream 52314 11324745 ~ 11330366 (-) True G35434
TU52305 lncRNA downstream 69850 11311549 ~ 11312830 (-) True G35522
TU52216 lncRNA downstream 132674 11249199 ~ 11250006 (-) True G35450
TU52278 lncRNA downstream 161789 11219968 ~ 11220891 (-) True G35499
TU52399 lncRNA upstream 282063 11670957 ~ 11674817 (-) True G35592
TU52405 lncRNA upstream 303656 11692550 ~ 11694947 (-) True G35594
TU52415 lncRNA upstream 307297 11696191 ~ 11697674 (-) True G35597
TU52417 lncRNA upstream 309054 11697948 ~ 11699666 (-) True G35599
TU52418 lncRNA upstream 309054 11697948 ~ 11699511 (-) False G35599
XM_043238695.1 mRNA downstream 897 11373802 ~ 11381783 (-) False tbx5b
XM_043238694.1 mRNA downstream 897 11373802 ~ 11381783 (-) True tbx5b
XM_043238874.1 mRNA downstream 14066 11365078 ~ 11368614 (-) False cfap73
XM_043238875.1 mRNA downstream 14083 11365078 ~ 11368597 (-) True cfap73
XM_043238864.1 mRNA downstream 22031 11348628 ~ 11360649 (-) True tpcn1
XM_043240381.1 mRNA upstream 426 11389320 ~ 11399607 (-) True nexmifa
XM_043239807.1 mRNA upstream 14109 11403003 ~ 11412347 (-) True zdhhc15a
XM_043239802.1 mRNA upstream 23522 11412416 ~ 11431060 (-) False LOC122345557
XM_043239801.1 mRNA upstream 23522 11412416 ~ 11431059 (-) True LOC122345557
XM_043239806.1 mRNA upstream 42966 11431860 ~ 11436272 (-) True cnga2b
TU52116 other downstream 456517 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 508616 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 920971 10461208 ~ 10461709 (-) True G35122
XR_006251099.1 other downstream 1047338 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51236 other downstream 1980057 9337828 ~ 9402623 (-) True G34789
TU52323 other upstream 31061 11419955 ~ 11467122 (-) False hmgn7
TU52322 other upstream 74937 11463831 ~ 11467122 (-) True hmgn7
TU52344 other upstream 194886 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 412420 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 776516 12165410 ~ 12169327 (-) False sh2d1aa

Expression Profile