RNA id: XM_043239983.1


Basic Information

Item Value
RNA id XM_043239983.1
length 7677
RNA type mRNA
GC content 0.49
exon number 21
gene id sptbn4a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11656571 ~ 11680543 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGAATCTGCCCACAAAAGCACACGTGTGCATCCATTCAACCGTCACATCCTCCGCAGCACGATGTTTGCGAGTGCGTGAGCTCATTCAAAGAGGGTAACTTGTGTCTTTAGGTGTCTAAATCTGCTGTCCGCCCCCCCCAACATACACGCACATCAGCGACTCCTCCCACTCCTCCGAACCAACCCCCCCATCCACCCAGGTCGACCCAGCAGGACGGTGTAGCGATTCCGGGCGCAGCGCTGAAACCAGAGCTTCGCCCCTGACGCGGACGCAGGCAGGAAACAACCCCACCGAAGGCTTCTGTAGGAGACCGAGCGCTTTCAGTGGGTGTCTGTCTTGCGGGTGCGTGCGTACCGGTTGTTTTTTCTGAGCCGTTGGACTGACGCACGGATACTGCAGCAGAACTGCAGGGGCCTGGACGCTAACCTGGAGGACATGAGGACCCAGTGGATCCCCCACCCCTGAGCTCCAGACCCCACTGCTGCTGCACATTCTGCTGAGCTGAGCAGAGCTCCCAGAGGCCGATAGGATGCTGACAGCTCGCGATGGAGCTCGAGATGAAGCTCAGAAGCTGCACAGGAAATGGATGAAGCACCAGGCCTTCATGGCCGAACTGGCCCGTAACAAAGAATGGCTCGCCAAGATCGAACAGGAGGGCGAGGAGCTGATCCAGGAACAGCCCGAGTTGCGATCGGTGGTGGAGATGAAGTTGAAGGAAATCAGAGAGTGCTGGTCTCACCTGGAGAACACCACCAAAGTCAAGGCCCGCCAACTGTTTGAAACCCAGAACCACCGCACTACCGACCTGCCCACCAACACCCTCAGCGACCTGGACCAGCATCTCACCGCCATACAGGATCATCTGCCCACACTAGGCTCCACCCACAGCACCCAACCCACCCTCCTTCAGCCACGCCCCACTTTCAGCCAGCAGCTCCAGAGGATACAATCAATGGAAGCCCAGATGCAGCTTTATCAAGGTGTTGGTGAAGTCAGGGCTGGTGCTGATCACCGGAGACCAGAAGGAGAAGAGCAAGGTGGTGTGACGGAGACCCGAATCGTCCGTCTTATCGAGCCTCTGAAGGAAAGGAGGCGGATCCTTCTCGCCTCAAAAGAACTGCACCAAGTTACCCAGGACCTGGAGGATGAGATTGTATGGATTCAGGATCGGCTACTTTTGGCTTCATCTACAGAATATGGGGCCAATTTGCAGAGTGTCCAACATTTAATCATGAACCATAAGGCGCTGCAGATGGAGATACAGTCTCAGAGGGGGCGGGTCGAGGAGGTGCTGGAAAGGGCAGAGGCCGTTGCTGCCCTGCGGACCCCAGAGGTGGAGTTTGTGCGGGAGGGGGCGGGTCATGTGAGGCAGCTGTGGGAGGTTCTCCAGGTAGAGATGGAACGTCGCACAGTGATGCTGGATGCTGTGAACCATGCCCAGCAATACTACACCCAGGCTGCGAAGGCGGAGTCTTGGCTCAGCGGACAGAAACTTCAGGTCCTCAATGAGGAGAAAGGAAACGATGAGGCCAGCACTCTTAGGTTACTGAAAGAGCAGTTGGCCTTAGAGCAAACAGTGGAGAATTATGCAGAGACCGTAAGCTCACTGTCCCAGCAGTGCCGTCGCATGCTTGAGCTGGGACATCCAGACAgTGAGCTAATCACCAAACAGCAGGCTCATATAGACCGGCTATATGTGTCTCTAAAAGACCTGGTAGAACAGAGGAAAACAAAGCTGGAGCAGCAATACTGGTTGTATCAGCTTAAGCGTGAGGTAGAGGCACTGGAGAAATGGATCTCTGAGAGGGAGGCTGTCGCCAGCTCCACTGAACTCGGCCAGGACCTAGAACACGTCACGGCTCTGCAGAGCAGCTTTACACAGTTCTCCACTGAGACACGTGCAGTCGGCCAGAAACAGATGGATTCAGTCAATAAGATGGTGAATGAGATGATTGACTGCAGTCACTCTGATGCTGCCACCATTGCAGAGTGGAAAGATGGGCTGAATGAGTCATGGGCTGATCTTCTTGAGCTCATGGACACCAGAGCGCAGATGCTTGCAGCCTCGTACCAGCTACACAAGTTCTTCACAGACTGTCAGGAGgtGCTGGTCCAGATCGAGGGAAAGATGAGACAGCTGCCAGAGGTGAGGTCATGTCAGGTGAGCTCAGCCAACCCTGGCACACTGCAGAGACTCCTGCACTCTTTTGAGCACTCCCTGCAGCTGCTGGTCTCACAGGTACGCCAACTGCAAGAAAACGCAGCTCAGCTGCGTGCGATTTATGCCGGAGAGAAGGCAGATGCCATTTTATCCCGTGAGCAGGAAGTGATGCAGGCCTGGAAAGAGCTCCTTGTCGCATGTGAGGGCAGCCGTGTGCAGGTCACCACAGTAACTGATAAGATCCAGTTCTTCGCAGTGGTGCGTGAACTAAGCATGTGGATGGATGGAATAATGGGACAGATCGGCTCAACTGATGATGCCAGGGACCTCTCTGTGCTGGATGGCATGATGTCCCAACATCAGAATCTGAAGAGTAAGATAGATAACAAGAGCAAGAACTTTGTGCATTGTGTGGAGATGGGAAAAATGCTGCTCGCGGCACGCAACCCTGCAGCTGAAGAGGTAAAGGAGAAGTTGGAGTACGTCATGGCAAAGCAGAAAGATCTGAATGATCGATGGGAACAGCACTGGGAGAAGCTTCAGCAAGCCCAGCAGAGGCTACAGTCCAACCAGCCAGGATCAGCGGAGCAGTCCTGGCTCTCAATCAAGGAACCAATCACTCCAAATACCCGTGAGGCAGGTGGCGGGACAGACGAGGTGGAGGAGCTTATTCGCCGGCATGAAGCATTCCGGAAGGCTGCGTCCACATGGAAGGATCACTTCAGCTCGTTACGCCAGGCAGAGAAAATGAAGGAGGAACTGAACAAGCCGCCTTCTACCTCCTCTCTCCTCAGCAGGCAGATGTTCCCTCTCTCTTGTCTTGTGCCCAGctcttcttcctcatcttcatcctcctctctcTTCCGTAACCCTCTTCAGGACTCACTTCTGGAGTCTAAGCCCGGTCCGGACCTCATACACGCCACAGAAAACACCATGGCGAACACACTCGCTCAGCGGCTCGGATCCACTCTGAACCCCTACACACCTGTCATGAATGGCTCCTCGTACCACGGGCTGAATCAGCCATCAGGGGGTGTAGCAGAGGGTCTTTCTTATCATGGCCTAAAACAAGGTGTTTCAGGCTTGGATAATTCTGGCTATCAGGGGTTAAACCAACAAATTGGTGTCTTGGGGGTGAACAGCTCCAGCTACACTGGGCTTAACCAACAGGTTGTTTTAGGAGAAGATAGCTCCAGCTACCACAGCCTGAACCATTTAGGTGCTGTGGGGGTGGGAGTGGAGCCCAAAATGGGATATGCTTGGCAgcatctgaaagctgattgCCTTCAGCCCAAAATCAACCACATTCACAAAGCGGTTCCACCTTTACTGGAGGCGCACCGAGCACAGCTCGCCGGTGGAGCAGCAAACATGCCAGCTCCTCCTATGGGCCTGGATCCTTCCCTGGAGATGATCCACAGCCGGTTACAGAGAGACCCTCGTGGGAGCCGATCTGACCCTCAAATGGATCACTTGAGGCGGGAGAGAGAGTACCGGCTTGGCCGACAGACCTCCAGCGAGCAGGAGATCCAGGCACGACTTAACGAGCTCCCGCTGATTGTTAGGCAGGAACGCTACCGTCGAAGAATGGAGAGACAGTCGTCCAGTGAGCAGGAGGGCAGTGGTAGGCAGAGAGTACAGAAACATGACTCCAGCGATGCAGAATCTGGGAAAGAGCCATCTGACAAGAGACCATCTGGggAGAAGCGTTCCACTATGGCTGAGATTGTTGAGCAAGTGCAGGAGAGAGAAGCTTGTCATGCGAGAGGCGAGGTGTACAGACCCCCCAGCAGCCTCTCTGCCCCAGTAAGTCGTCTGGATCGCCCTCGAGCTCGAGACCGCCCCAAACCACGGCGAAGACCCCGTCCAAAAGAACCCGAGGAGCCACGGAGGTCCCGTTCCGCACCTGCTCAGAGCATCCCATCCACACCTCAGCCTCCTACCCACACCGTTGAACACGAAGGCTTCCTGTACAGGAAACACGAAGAGGAAGGGAAAGAGAGAAGCCCAAATAGCAAGTCGTGGGTAAATCTGTTCTGCGTGCTCAAACAAGGAGAGATCGGTTTTTACAAGGATGCCCGACACAAAACAACACCCTACAACGATGAGCCACTTCTCAACTTGGCCATCTGCGAATTTGACACTACCAATGGatataaaaagaagaagaatgtcTTCATTCTCAGGACCACTGCTGAGGGGGACTACATCTTCCTGGCTAAGGATGAGGAGGATCTGAAAGGTTGGGTCAACAGCATCAACGCTAGCCTGAAGGAGATCGAGGATATCGCCAAGTGGGAGAAAGCCACAAACTCCTCCACCGACCCGGACAAATCAGAGCGCAAGGAGCGTTCTGAAGGGGCGGAGCCATCCGAGGGGGCAGAGAGATCAGAGAGGTCAGAGAAGTCTGAGCGTTCAGACCGATCAGATAAAATAGAGGCATCGGACAGAAGCTCGGAAAAGAGGGACACATCTGAGAAGGAGAGAGGAGATAGAGCTGAAAGAGGAGAGAGGGGAGAAcgaagggagagagagaggggcgaACGAGGAGACCGGGGCTCCAGGGGATCCAGCACTTCGGGAAAAAGCAAATGACTCATCTCTCCACACCTTTATTTActcatccatccctccatctctCCAGAGAGAAGACAGGACTTgcatttctctgtctctgtcgcTCTGTTTGTCCTGACAGCCTGATTTCAGGACCGATGTATGTGATGTCCCTTGAATGTGTCGATGTGcgtctgtgtgcgtgtgccAATGTGTTGAAGAGATTGTCTGTGAAAGAATTTGACATGGACAGTATAAGGCCGTATCCCAGCATCAGAGGGCCAGTTCAGCCGCCCTGCTCGACTCTCACAGAAAAGGCACTTTAGATTATTGAGGATAACTATAGCCCTTAATATTTTAGAAGCGTTTTCTCGAAGCAATATACTGTACGTAATAACCGATGCCGCTCGTTTTAGCTGCTCTGCTCTTCCAAGCgagtgcgagagagagagagagagagagagagagagagagaaagtgaaagaaaagtCTTTCCGAGAGAAATCTGATGCGgtagtagggacagtgttcctCCTGATCTTTGCACAGCCCCACACTTGCATACGCACACGCACTGTGCATCATGGGAACACCATTCTCTCACCTGAGGCCGTACGCGTCTTCCACCTGCTGCTTGTAGTAATGGTTTTAATCATGCGAGACGCTTCACAGTACTGTGGTCAGTCCAAATTACACTCGATGAAGAGTCTCAATCACAAAACGTGAATATAAtgtggcagtgtgtgtgtgtgtgtgtgtgtgtgtgaatacagCTCCATCCAGAAGGAGATCAAATGTACTATGTATAATCTCATTGATCGTATTTATTAGGTTATCACGATACAAATTTAAAGTGTGAGGTTATTCTTCCCTGAACTAAGAGGGAGTACGATCAAAGGCCCCCCGTGTGTGTACAAATATGCTGCTTTTTATCATCTCTGTCCCCTGACATCATTCTTTGATTGTAAAATGATTAGTACACATAAAATAGGGTGTCTGTGACTTTGTCATGCTATAAAGAAaagattgtatatatatatatttgtatatatactaGTAAACAAGATTTACTTCTATGAGCTGCAGCgtctaattacaaaaaaaaaaaatcatttttatcaatgtatGAAAACgtaacaagtaaaaaaaaaaaaaaaaaaaagagttgtttAAAGTGCCCCTGGCTGAATTCAGACAGTAAACATGCGTGTTAACCGCCTTTTCCGGGATCTCTTGTATTACGGAAATGCAACTTTTATTGTTTACggtttgtttcgtttttttggcCGGGGCAAAAAGATCAGGATCCTTGTAAAAAGAAATCACCATTAAAACCCTCATCAGAGACTGTTTGTGTTtagtttaaagaaaactgtctcTTGACAGCTGTTGCAAAACAACGACAAAGACAATGATTTCCCCCTTAAAATATATAGgtgcaaattatatttacacagatatgatacaaataaaaatatccgAGTATACCAGaatcaataattaaaagaaaactcagtttgtctgtttttaaggTGTTTTTCCACTTATTTGTATTGATGGTCCTAATGCTTTAATTTACATTGTAAATCACGTTGGTGAGGTCAAGCTTTGTTGTCCAGCTCTGTTTTTACCGCACAAACATGTTCTTCTCAGTTCAAACTCCGACTGGCCTCATTGTCTATGCAACAGCAAATATCAACGCCATACTAAAATCAATTTCTGAAACTAAGGACAAACCTTGTGGAAAGCAGTCCTTACCTAAACCTGTGAATAATCACAATACAAGTCTGCAAGTCCTAATGACATTAGGACTCTCGTCTAACgtgtcagtttttgttttttttctcactgtggGTGCCTTAGGAATGCATGTCATAAGGAGATGTGGACACCACCTCCATTATTTTATTCGGTATgttctgaataaaaacaaaagcatttcttacagacagacacactcgaCCCCCCTGATCAGCTCGGTATTGATCAGCGTTTTAAAAGCTGAGCTGATTGTGTGTGCTTGCTTTCAGAAATAAGTGAGTTCCTGCTGTCACGTGACTCAGAACACGTACCCTGTAATGACAGAAAACAGTCGCACACCCTTTGGTCAGGCTTAGGGTCAAATCTGCTACCGAGTGGATATGTATTTGGTCATTGTCATAGAAACTAAGCTTGTTTTGCACTGCGTAACGTTGTCTGGTATATGTGACTGAGGGTGAATGAATGTCTGTTATCAAATTGTTGCTGTGTATGTCTCTGTCTTACCTTTGCTGAAGCAACCTCACTCCTAACTggtttaaaacttattttagacTCTTCTACTTATCCAACATCCGTTCCAGAGTGACCCTGGCTACGGTCTGCCTGCATAAAGCACAATTTCTCCCTGAGCTACAATCTGGAGTATTAGAAAAGAGCATGATCCCTGCATTTCTTAAAGCTGCCACATGAGTTCAGTGTTGAGAaggttcaaatatttttgattcGAACACTTTCGGGTTTGCCTCTTTTTAAACCTTCATGTCTGTCTGTGATTTTGCTTTCAGACCACGTGGtcagttttgctttgtttctctCCAGCTTGACCTCACCAGGaagtatttacatttcaattcaTTGCTGAAAGAATGGAGCAAAAAGCCCTAAAAATGTATGGAGTGTGTGGGTTGCCCTCCTTTATTTGAAGTCAGTTGTTTCACacatgaaattaaagaaaaacactatTAAGTTGCATGAAAGAGAATATAGAGGTGATTTCTATGCAACAGCTGTGCATGTTTATCAAAAGGGTTTCAATCTTCAGCAAAGCACTGAGTtttggatgatgatgatgatgatgatgatgatggagaaATGAGTGGAATGAGCAGATCACTTGTATAGCTGAAATGagacattaaatcatttatgtaCTGATATCTGCACTAATTCATAAATACAGGTTGTATATATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52095 lncRNA upstream 3890 11650257 ~ 11652683 (+) False glra4b
TU52094 lncRNA upstream 3890 11650628 ~ 11652683 (+) False glra4b
TU52055 lncRNA upstream 125329 11530518 ~ 11531244 (+) True G35350
TU52008 lncRNA upstream 191234 11463869 ~ 11465339 (+) True G35316
TU52017 lncRNA upstream 214162 11441539 ~ 11442411 (+) True G35322
TU52388 lncRNA downstream 26116 11706659 ~ 11706998 (+) True G35584
TU52389 lncRNA downstream 26988 11707531 ~ 11707773 (+) True G35585
TU52435 lncRNA downstream 47733 11728276 ~ 11728601 (+) True G35606
TU52458 lncRNA downstream 93443 11773986 ~ 11775492 (+) True G35629
XR_006251023.1 lncRNA downstream 262894 11943437 ~ 11986820 (+) True LOC122345698
XM_043239472.1 mRNA upstream 6254 11638516 ~ 11650319 (+) False glra4b
XM_043239471.1 mRNA upstream 6254 11638529 ~ 11650319 (+) True glra4b
XM_043239468.1 mRNA upstream 22123 11623389 ~ 11634450 (+) True aifm1
XM_043239470.1 mRNA upstream 22123 11623390 ~ 11634450 (+) False aifm1
XM_043239835.1 mRNA upstream 37505 11615592 ~ 11619068 (+) True casp22
XM_043239989.1 mRNA downstream 9374 11689917 ~ 11699519 (+) True LOC122345658
XM_043239986.1 mRNA downstream 9374 11689917 ~ 11699519 (+) False LOC122345658
XM_043239987.1 mRNA downstream 9374 11689917 ~ 11699519 (+) False LOC122345658
XM_043239988.1 mRNA downstream 9374 11689917 ~ 11699519 (+) False LOC122345658
XM_043239991.1 mRNA downstream 9374 11689917 ~ 11699519 (+) False LOC122345658
XR_006251083.1 other upstream 594259 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 723410 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 925521 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1538447 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1857215 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 243685 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 568595 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 568595 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 833533 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1022828 12703371 ~ 12705241 (+) False iscu

Expression Profile