RNA id: XM_043239986.1


Basic Information

Item Value
RNA id XM_043239986.1
length 4100
RNA type mRNA
GC content 0.39
exon number 21
gene id LOC122345658
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11689917 ~ 11699519 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCAACTGAATCTGAAAGTGAAAGAGTTAGTGACAGAGCAGTTTGAACGGGTAGGTTGTATGACACTTCTGCTCTGCAGTTCAGCTGACACCGGATATTTAAAGTAGAAAGGAGAGAAAATGGCATTTCCATGCaaaaATGAGATTATCGTCCTTGGCGAAGCTCACAGTGCCGATATCAAACTGGGGTCTGATGTCACTGTACTGTGTCCTCTGCCATCTGAAATCAATGCTGCTGACGTAGACATCAGGTGGTTTAAGGGAACAGACTGTCTGTGTGTCTATATAGAAGAACAGACGATTGCAGGGGTGGGCTATAAGGGCAGAGTGAAATTGATTATGGAGATGGAGAGAGGAAATATTTCATTAGAACTGAAGGACTTCAGAGAGTCAGATGTTGGAGATTACCTGTGTCAGGTGGTCAGTGGAGgcagaacagaaaagaaaacagtaaGACTATATACTGCATTTCTTCTGCCTGAGACTACCCCAGAACAGAAcgatgaaataaaaatggaaaaatctgTGTTAATGGCAGTTATCACAGAGCTGAAAGACACAAAAcaggaatgcaaaaaaaaggatGCAGAAATCGAAGAACTTAAAGCTGAATGTCTGCAAACAGCTGAAGAGCTTAAGAAGAGAAACACACAACAGGAGAACATGCACAATCCAGCAAAAGAACTGAATACCAATGAATTACATCAAGATAATCTAGAAAGCAAAACTACATCTCtggaaaaacaacagaacattGAAGTACTAAAAGTGTTCACTCATTTTTGTGGAACCGCAAATGCATTGCATAAAGTGCACCAGACCTTTATTGACACTCTGggaaagaaaaatctgaatctgaGCAAAGTTGATACCCTGGATGAGAGTGAAGTCTTTATGATTTTTTGTCTCGTTTCTCAAATGGAAACTGAAATTGATGGAGCACTTAAAAGATTTGAAGGCGAATCAGGCTCTAAGCTGGCTGTTCTAGTGGTGCTTTATCCCATGACTGGCCCAGAGAAACCGGTCCTAGACAACAGCAAGTATATCAACAGGACAGACATACTCACAGTAGACTGTCTGTTCAATGAGGATACAGGATTACTAAAGTGTCAGAAGAACTCAGATGCACTTGACAAAGTTATAAACTGCTTAAAAGAACGGGTATTTAACAAGAGGGCAAAAGCAGGTGCCGACGTTTGTCCACCTCAAGACCCAGATCAAGTAGGATCACACAATTCAACAAAGGATGAAGTTGAATCTGAATCAGTCCAGAGAGAGCCAATTTTCACAGAGTTGAAAGACGCATCGGACGGTCTTGAAAAAACACAACAgggaaatgaagaaaaaaatgcaccGATTGAACCGGTTAGAGCTGTGCAGCTGCAAACATCTAAAGAGCCTGAGGaggaaaacacacaacaaaagaaCATGCACAAACTCTCAAAAGAGCTGGAAACCAGTGAAGTAAATCAGGATCCAGATACCAAATCTACACCTCTGGAAATACAGCAGCTGAATATTGAGGAAGTAAAAATGTTCACACTTTGTACTGGAAATGCAGATGCAttgcaaaaaacacaaaaggaattCATTGGCATTCTCCGAAACAAAATTCCAAATCTGAGGGAAGTTCACAGCCTGGAGGAGAGTAACCTTGCTTTGATTTTCTGTCCTAATGTTTCTGTAGCTGGACTAGACATTGAGGCAGCACTTAAAAGATTTGAAGACAGCAGAGGCTCTAAGCCGGCTCTTCTAGTGGTGCTTCATCATACGTTTGACTCTGAGAAAGTGGTCCTAGACAGCAGCCGATATGTAAAGAGGACAGACATACTCACAGTGGACTGTCTGTTCAATGAGGATAATGGTTTACTGAAGTGTCAGAAGAACTCAGATGCGGCTCACAAAGCTGTGACCTGGTTAAAACAGCAGGATAAGAGTGGATCTAAACCAGTGCAAGCAAAAAGTCAGAGAAAGGAGGGTAACAAACCCAAGACAAAGGGTGTCAAAATGTTCTGTATATCGGCTGGAAATGTGGATAACTGCTACCAGAAATTTATTGGCATTTtagaaaacagatttaaaagtCTGAGCAAAGTTCACACAGTGGATGAGAGTGACGTAATTTTGGTTTTCTGTCCTATTGTTTCCCGAGCTGGAACTGACATTGATTCAGCACTGAACAAGTTAAAATGCCATACAGaCTCTGAAAAGACTGTGCAGCTGAAGCCTACTGTTCTAGTGGTGCTTCATCACACGTTTGACTCTGAGAAAGTGATGCCAGACAGCAGCCAGTATGTAAAGAGGACAGACATACTCACAGTGGACTGTCTGTTCAATGAGGATACAGGATTACTGAACTGTCAGAAGAATTTAGCTGTGGTTCAAAAAGTTGTGAACTGGTTAAATCTGCAGGTGATGAAACAGGAAACTTCAGCAGACAACATGACGCAGATGACGCCTACTTCCTCCTGTGCGCTGAATTATTTTGTGAGTGTGACTGGAGATGCACAGGAGCATCACAAGCACTTCATAAATGCTCTACAGAAACGTATGCAGCTGAGGAAGGTTCAAAGAGTGCAAGAGAGTGATGTCATTCTGCTCTTCTGTCCTGACATCATTGAACATGGCAAGAAATTAGacAAGCCTGTTGTTATCATTTCACTCAGTTATACAGTGGATCCAATAAATGCCAAAAACATCAGTGGATTTGAATGCAGACGAAGTATTTGCCCGGTGGATTGTATTTTCGTTAAGGGTGAAGGACTGCTGGATtgccaaataaacaaagaagaaaTGTCTGCAGTcttaaactttttcaaaaaaaaagtgaTCACTGAGGATGAGGAATAGAGTCACTGAGGATCAATGCACACCTGTCAcagctttttcagtttttttttttaatcagacatGATTGCATGATCGTCTCAGATCTTTGTTTCACTGATATATAGCATGTGCTCAGTAGCATGTACTGTAATGCTAATAATGAACGTTCATTATAAATTtcatgtaaaaatttaaatttagtaaGTATATTGTGTATAGTGTCGACATGTAACGCTGTTATGCTTTGCGTCTCCCTAGTTAGAGTTTCGCTCATTTCCTGATCCCATGCCTTTTCTCACCCACTTCACTTTATAAATTTGTAGGTAAGAGTAATTAACTATAGCCGTAAGTGAAAATATAAGAATGCAGGTTCCTAGGACCtcgtttataaaatgttttatagaacCATTCCTCACTGATCCAAGATCATTTCTCAAATGTGCGTTATTCATAGAAATCTTAGATCTCTTTGTAGGTGTGAAATCTCAAGTGATCTTGCATTTGTCAGATGAAAGTTATTAGATCTCTGGCTTGAAAATGCTCCCTAATTGATGAGTTTAGGTCACCAGGTTTTAGGTCACTGGAGGACTGGTGTCTTGCAGAGTTTtaactccaaccctaatcaaacacattttagtaatttttacttttgtactttAATCAAAAACTTTTCTGAATTTGTCCCAAACTGTTTGTCTGATTTTCAACAAAATCAACTCATCTTTAGACGTAGCTGGCGAAAAAAATTTGAACCAAACTTGATTTGTTATAAAGACGTGAGGGcacctgaattttttttttgccacagcGCCACCTAGTGGTAAGAAGATATGAAAGAAAATTGCTAATTTTGCTTATAACTTCAATTGGATTTTTGGTTTTGGCAAAAATATCTCCCTACCAGGTTTTCCCATGTTGGTCATTTGCTTGCATTTCCCCCAAAATAACACACAAGTAATACCATGGTATGAGCTATGCATATTTAAGATACATGTTAGGTAATGGATTGTTACACTGGAGCACTGTAAAAAGCACTCAATGTGCTATACTCCTGTAGGGTTTAATATAGGCTAGGTTCGAATCtggaattttaatttattttaataaatcaacagATGGcacttttaacacacacacacacacaatgaagaATTCCCAAGATTAAATGAAGATGGTCTTGTTCCAGCCTACCACTAAAAAAGAATAGTTTAATGTTGAGTCCAGTGTTGTACTTAAggaagcaaaacaaataaaacaatgtctCAATAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52095 lncRNA upstream 37234 11650257 ~ 11652683 (+) False glra4b
TU52094 lncRNA upstream 37234 11650628 ~ 11652683 (+) False glra4b
TU52055 lncRNA upstream 158673 11530518 ~ 11531244 (+) True G35350
TU52008 lncRNA upstream 224578 11463869 ~ 11465339 (+) True G35316
TU52017 lncRNA upstream 247506 11441539 ~ 11442411 (+) True G35322
TU52388 lncRNA downstream 7140 11706659 ~ 11706998 (+) True G35584
TU52389 lncRNA downstream 8012 11707531 ~ 11707773 (+) True G35585
TU52435 lncRNA downstream 28757 11728276 ~ 11728601 (+) True G35606
TU52458 lncRNA downstream 74467 11773986 ~ 11775492 (+) True G35629
XR_006251023.1 lncRNA downstream 243918 11943437 ~ 11986820 (+) True LOC122345698
XM_043239984.1 mRNA upstream 9374 11656571 ~ 11680543 (+) False sptbn4a
XM_043238163.1 mRNA downstream 1523 11701042 ~ 11703519 (+) True LOC122344640
XM_043238446.1 mRNA downstream 18041 11717560 ~ 11724473 (+) True gpr83
XM_043238908.1 mRNA downstream 117833 11817352 ~ 11823611 (+) True las1l
XM_043238911.1 mRNA downstream 140957 11840476 ~ 11845269 (+) True zc4h2
XM_043238910.1 mRNA downstream 141945 11841464 ~ 11845269 (+) False zc4h2
XR_006251083.1 other upstream 627603 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 756754 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 958865 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1571791 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1890559 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 224709 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 549619 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 549619 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 814557 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1003852 12703371 ~ 12705241 (+) False iscu

Expression Profile