RNA id: XM_043240020.1


Basic Information

Item Value
RNA id XM_043240020.1
length 5360
RNA type mRNA
GC content 0.44
exon number 22
gene id camk2b1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12457911 ~ 12510008 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGGCGATTGGAGCACAGCGCGGGGGTGAGGACGCCCGCCGTCAGCATACACGCTGCCCTACTCAACCATTAACCTGTCATTTCAAGACATATCAGGCTTTTTTTGAGCGCAAAATCGAGGTGAATATCCAGGACGCCGTAGCTCGCCGATTTGAGGACGATTTTTAATTCTTGAAGAAGCGTGTCCGAGTCCGAGACGGGAAGACATGGCCACGACTACATGTACGCGCTTCACGGACGAATATCAGCTGTACGAGGAGCTGGGCAAgggAGCGTTTTCAGTGGTGCGACGATGTGTGAAGTTGAGCACGGGCCAAGAATATGCCGCCAAAATCATCAACACCAAAAAACTCTCCGCGAGAGACCATCAGAAGCTGGAACGAGAAGCTCGAATCTGTCGTCTGCTGAAACACCCCAATATCGttcgTCTGCATGACAGTATATCAGAGGAGGGCTTCCACTACCTACTGTTTGATTTGGTGACTGGAGGTGAACTGTTTGAAGACATTGTAGCCAGAGAGTACTACAGCGAAGCAGATGCCAGTCACTGCATCCAGCAGATCCTGGAGGCGGTGCTTCACTGCCATCAAATGGGCGTGGTGCACCGAGACCTGAAGCCAGAAAATCTGCTCTTGGCCAGCAAGTGTAAGAACGCCGCTGTGAAACTGGCCGACTTTGGACTGGCCATTGAGGTGCAGGGAGACCAGCAGGCATGGTTTGGTTTTGCAGGGACACCAGGTTACCTGTCCCCCGAGGTGTTGAGGAAGGAAGCATATGGCAAACCGGTGGACATCTGGGCTTGCGGTGTGATTCTGTACATTCTGCTGGTTGGATATCCACCTTTCTGGGACGAGGATCAGCACAAACTTTACCAGCAGATCAAAGCAGGAGCTTATGATtttccatCTCCAGAATGGGACACAGTTACTCCTGAAGCCAAAAATCTCATCAATCAAATGCTAACCATAAACCCTGCCAAGAGAATCACTGCACAGGAAGCTCTCAAACACCCATGGGTCTGCCAACGCTCTACCGTGGCTTCCATGATGCACAGACAAGAGACTGTGGAATGCCTGAAGAAGTTCAACGCCAGGAGGAAACTCAAGGGGGCCATCCTCACCACCATGCTTGTGTCACGAAACTTCTCTGCCAAGAGCTTGTTGAACAAAAAAGCAGACGTTAAGCCCCAGACAAACAGCACCAAAAACAGCATAGTCACCAGTCCCAAGGGAAACCTCCCCTCTCCTGCACTGGAGTCATCGGACAGCAGTAATGCCACAGTGGAGGATGAAGAAATGAAAGGAAAGCTTGTAGATAACAGTTCAGTTCAGTCAAACCCCAGCAGCCAGCCTGACTCCGCCCACTCGCCTCCAGGCCCCTCCCCCGCTCTCTTCACTGCAACTAAGTTCACTGATCTATTGGGTGTGGTACGTCGGGGCTCGGTGCCCACATCTGATGGTGAGGGGGGAAGCACTATCACTCCAGCTGTTGTTTCTGCCCCCTGCACTCCCCAGACCCCCAGCATTCCCACACAGATGTCACGTTTGACTGATCTAGTGAGCAGTGTGCGCAGACCTACGGCCCCTCATACAGACAGCGAGCCATCGGCAGCCAGCAGACCCCTTACTGCCCCAATATCTGCCCCAACACACCCCTCCCCTTCCCCTGCCCAACCGTCCTCCAGCCCCCTGCCGTCAGCACATTCACGCAAACAGGAGATCATCAAAATCACCGAGCAGCTTATTGAGGCTATCAACAATGGCGACTTTGAAGCCTACGCTAAAATCTGTGACCCTGGACTCACCTGCTTTGAACCCGAGGCCTTGGGAAACCTGGTGGAGGGGATGGACTTCCACAGATTTTACTTTGAGAACTTGCTGTCTAAGAACAGTAAGCCCATCCACACCACCATCCTCAACCCTCACGTGCACCTGATTGGAGAGGAGGCCGCCTGCATCGCCTACATCCGCCTCACGCAATATGTGGACGGGCAGGGCCGGCCGCGCAGCAGCCAATCGGAGGAGACGAGGGTGTGGCACCGTCGAGACTCCAAGTGGCAGAATGTCCATTTCCACTGTTCGGGAGCTCCAGCAGCCCCTCTGCAGTGAAGGTTGAGCTCATTGTAATCACATCTAACAAGAGTGCCCAGCCAGACATGGAGAGTgcaagagtgaaagagagagagtgagggagggGGGAagttggagagagagagagggaggaaggaAAGCGAAGCCCAGTGATGGGTGGCTGTGAGTCTGCAGCGCCTGACCCTCCCACACTGGGCCCCGCCCCCTCGCCTGTCAATCACCTCACCCGCCAATCACTTCTGTGCATCATCGTCTTTTGTCTTACCTTCAACTTTACCCCATCCCTCGCTCCCAGACACCGTCCCTGTATCTTTACACCCGTGCAGAGACTCCCTTTGTTGTGCACATGTGCTGTGTGGAGTTGGACAGTCTTTGATTAGTACGGATAATAAGGCCTCAATGAGTCGTCTGTGAAATGCCATGCTTTTCCGTCGCACCTTCCCAGTGTGAATATTGTTACACTGATTCGCCGTCCTTACTTACAGTGTGTAGATTTTCAATAtcgttgttattattattattattattattatgattgctATTGTTCTTACTGttgttattagtattaaatACAAAGGCAATTGTACGTGTCACTTACACAATTCACGTTCTGGATGccaatgatttttaatttatgccttttcttttcacaacgttttttggtttatttttattttttggagagcatgattttttttttttccgtgtaTCTGAAGCGGCCCGGGTTATGTGGAGAAATAAGGGCCGCCATTTATGTACAGGCTTCTCAATGTGATTCACATCCAACCGACGCGTCCGTCCATGTGTTTAAACGTTAGTGGACATGTTGGTGTGACTGTTTTGGGGCAGATTCTACCAGAGCCTGATCAAGAACGATGTGACATTTGGGGTCTTCCAGCTTTATTTCTTGCATCATTAGCGCAGatttataataagaataaatccGCAGATTTCCTATGAGTTGGTGAAATTTATATTGGATTAACAACTCGTTGTTCTGGAAAGCCACAATCGTGCTTTATATGTAACCCGTGACACCAGTTGCAACGTTAGTATTAGATATTAgtgttgcgtttttttttttttttttgttacttcttCAGCTGAGCCAGCGGTGTTAGAATAGCGCCCTTACAGTTGGACTGACCGAATCAATCTAAAAGCCATACATCAGCCGATCTTTCAGTAGGCATACGAGACGACCACCTCATTTATGCGTTTTCTCAGAACAGGGGAAGATGTGGACATCCAATGACGACTATTGTATCTCTACACTAGTCACAGTGGAGGTTCAAAACCATCGGAGGCCGTTAGGGAGCAGCTGATCGGAGGAACTTGagaaatttgtttaaaaatgaacatttctgtgatttttaaaagttaaagtaTTTGCTCTTACGCGTTTATTGCTCTTATATTTTCGCAACACATGCTATTTGACTTGCTATTACTTGTTCTATTTTTgagagtttatatatattttgtttgtcaTCTGTGTGTGAGACTTTTAAAGAGAGTGACGaatttgtgaccctggatccTTTTTAAAGTGCGTCCAGACTTTGGATGGGCAAAGTGCAAGGTGTGTGAAAACTTTCGAAGGATGAAgaggtttaaatttaaaatcggcagcaatagttttatatttcagaagATGGTGAGATGTAGTTTACGAAGTATACTTCGCAACTTTATGCTGGTTTCAGTCTACTTTTTGAAGGGATGGTAATTGCGGTGAACTGACGCGTCAGTGTGACATCATCACCCGGTCATGTGACTCGTTTTATTGACCTTATATATTGATTGTGTCCtcaggttgtatttatttatttgactacATTATCGCAAATTCTTACGTGCTTCTTAAGTGATGATGTTTGAACACAATAGCTTTGAGCCGCGTCATATCGATGATGACTACTGATCTTTTGATGTTATTGTTTGAAAGCAATCGTTCGAAGCGCCTCTCAGACAGATGGAAAGAGGTGATCTCTTACAATCCAATCAAAATACTTCTCTCAAACGAAGCGACCCCGCGAGGcacgtgtctgtgtgtttgtgctccgGTGTTCTGCTTCTGTTACGGTTGCGTCTCgttcttggatgctttttcatTCAATACTTCACCTATGTTTATACGAGTCATCAAAGTTCTACGTCTGTCCGCTccctaatttaaaaaaaaataaataaatcacaaaaaactaaacagcaTGTAAAAAGTGTactgttctctgtgtgtttagcaatgaaataaacatgttaaCGAGTAAAAAGTGCACATCACTATTAAAACAGGACACACAGTATTGAAACTGCAGATTACTTGCATTTCAGCTGGAATTTCTTTGCATGACAGTCACTTGAACACTAGGTTTGGTGTTAtctttttgattacatttttttctattgaatGCTGGTTTACCTAAACCTTTCTCTTATCTGTTTTACCAGCTttaagtgcatatatatatatatatatatattagtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaatatttttgtcccAAAATGATGCTGACAAAAGCAGTGTAAATGACGAAGACTATAGCTACGAAATGTCGAAGATATTAAGATTATGGAAATGGTGATATTTCTACGGCATGCTTTTGTATTAAGCTCATTGTTGTCAAAGCAGGGTGactgatatttatattaacGACTATAAGATTACTCATTAGTATGGGACTGCTTGACTTCAGAGAAGCACTTGCAATATTAGCTAAATATGCATGGGTTTTTGGAAATCACTTTTAGCTAAATTTGTATCGGCAGTGACACAGTTCTGCTGTTTGTGCTTTGCGAATATTCACCGAACCCGAATGGCCAATAAAACCGTGGATTGTTTCTAACTTCTATCGGTATTTCGttactaatttaataattaaagctCAGTAGATCCAGAGTTTTTCTACCTGCACCGACAGCGCCGTCCGTCTTTTAGCACAGGGCTGTTTCCACTCCATTCGTCATATCGTTTCTGTGATTGGAAACAGTACCTACCGGATAGTTTCTCTGAAGTTGAGTTTTCTCACAGTAGCCCTctgttagttttgttttttctgtataaGATAATATTCTCTTTGATTTCTGATGATTCTTACTTGTGTTATTGCTATGTTCTCCAACATGCTCTGTGTATTCCCTGACTTAAGCAAATGtgttcaaaacataaataaatgagatgATTTAAATACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52651 lncRNA upstream 99113 12356438 ~ 12358798 (+) True G35756
TU52630 lncRNA upstream 170533 12285693 ~ 12287378 (+) True LOC122345282
XR_006250984.1 lncRNA upstream 172789 12284445 ~ 12285122 (+) True LOC122345281
TU52639 lncRNA upstream 174162 12279235 ~ 12283749 (+) False LOC122345282
XR_006250985.1 lncRNA upstream 177928 12278130 ~ 12279983 (+) False LOC122345282
TU52759 lncRNA downstream 26730 12536738 ~ 12544088 (+) True G35834
TU52820 lncRNA downstream 38658 12548666 ~ 12551180 (+) True G35855
TU52802 lncRNA downstream 57176 12567184 ~ 12672206 (+) True G35843
TU52838 lncRNA downstream 130259 12640267 ~ 12641645 (+) True G35864
XR_006251058.1 lncRNA downstream 135276 12645284 ~ 12647088 (+) True LOC122345920
XM_043240845.1 mRNA upstream 858 12434336 ~ 12457053 (+) False si:dkey-13n15.2
XM_043240357.1 mRNA downstream 4005 12514013 ~ 12528790 (+) True si:ch211-225b11.4
XM_043240359.1 mRNA downstream 4005 12514013 ~ 12528790 (+) False si:ch211-225b11.4
XM_043240360.1 mRNA downstream 4005 12514013 ~ 12528790 (+) False si:ch211-225b11.4
XM_043240358.1 mRNA downstream 4005 12514013 ~ 12528790 (+) False si:ch211-225b11.4
XM_043238505.1 mRNA downstream 22371 12532379 ~ 12539820 (+) True pik3ip1
TU52593 other upstream 202239 12249138 ~ 12255672 (+) True G35720
TU52594 other upstream 202239 12249138 ~ 12255672 (+) False G35720
XR_006251021.1 other upstream 515839 11924228 ~ 11942072 (+) False smarca1
XR_006251083.1 other upstream 1395597 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 1524748 10926823 ~ 10933163 (+) False senp3a
TU52818 other downstream 4068 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 193363 12703371 ~ 12705241 (+) False iscu
XR_006251084.1 other downstream 293944 12803952 ~ 12807216 (+) False LOC122346073
TU53623 other downstream 1474089 13984097 ~ 13985706 (+) True ins
TU53776 other downstream 1780412 14290420 ~ 14292500 (+) True G36495

Expression Profile