RNA id: XM_043240048.1


Basic Information

Item Value
RNA id XM_043240048.1
length 4652
RNA type mRNA
GC content 0.45
exon number 18
gene id aacs
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5351446 ~ 5380269 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGCCGCCGCCGGTTGATTATGTGCGGCTGACGCTCGGAAGTGACCCATGTGTCCGAGCTGCACCAATACACGATCACCGGATCGGCCCGTTCAACTCCCGTGGTGCGCCTCTCGCAGTCCTCGTAGGTTATTCACGACACGCCGACGCCTGTCACCCGATCATGTCTAAAGACACGGAGGCCAAGAGCGAGGAGATTATGGAGTCGAAGGTGCTCTGGTACCCGGACTCTAAACGAAACACGCAGATGGACCGATTCCGGACTCAAGTGAACCGGGACTTCGGGGTGAATCTGGCCAATTATAATGACCTGTATCAGTGGTCCGTGGACAGTTATCCGGAGTTCTGGGCACAGGTTTGGAAATTCTGTGGCATCACTTGCTCAAAGGTGTATGAGGAGGTGGTCGATGCGTCTAAAAGGATATCCGATGCACCCGAGTGGTTTAAAGGCGGCAGACTGAATTATGCAGAGAACCTGCTCAAACACAAAGACCAGGACAAAGTGGCTCTCTATGCGGCAAccgaGGCAAAAGAGGAGATTGTCAAGGTGACTTTCGGAGAGCTGAGGCGTGACGTGGCTCTCTTCGCTGCCGCCATGAGGAAGATGGGCATCAAAACTGGAGACAGGGTCGTAGGATATCTTCCCAATGGGATTCATGCTGTCGAGGCCATGCTCGCTGCTGCCAGTATAGGTGCCATCTGGAGTTCAACCTCTCCGGATTTCGGCGTCAACGGAGTTCTAGACCGAATTTCTCAGATCCAGCCCAAGTTGATATTCTCAGTAGCAGCTGTTGTGTATAACGGCAAGCAGCATGACCATATGGAGAAACTCCAAAACGTTGTTAAAGGACTCCCTGACCTGGAGAAGGTTGTGGTCATTCCATATGTTCGCTCGAGACAAGAGACTGACCTCTCCAAGATTCCCaacagTGTGTTCCTGGATGACTTCTTAGCCACAGGTAAAGAAGGGGATCAGGACCCTCAGCTGGAGTTTGAGCAGCTGCCTTTCTCTCATCCTCTTTTCATCATGTACTCTTCGGGCACCACAGGAGCTCCCAAGTGCATGGTGCATTCTGTGCtgGGCACTCTCATCCAGCATCTTAAAGAACACGTTCTCCACGGCAACATGACCTACAATGATGTCATCATATATTACACTACGACGGGCTGGATGATGTGGAACTGGATGGTGTCCTCTCTAGCTGTTGGGGCTTCTGTGGTCCTGTATGATGGCTCTCCTCTTGTTCCTACTGCCAATGTGCTCTGGGACCTTGTAGACCGTCTGGGAATCACGATTTTTGGGACTGGAGCGAAATGGCTGGCTGTGCTGGAGGAGAGAAATCTAAAACCTGCAAACACGCACAACCTGCAGACCctccacacactcctctctACAGGATCTCCATTGAAGCCTCAGAGCTATGAGTATGTGTACAGCTGTATTAAGAACAATGTGCTCCTGGGGTCCATATCAGGTGGCACAGACATCATTTCATGCTTCATGGGTCAGAACATGACAGTTCCTGTTTACAGAGGGGAAATTCAGGCCCGAAATCTGGGCATGGCAGTGGAGTCCTGGAATTTTGAAGGGAAGCCTGTTTGGGGTGAGAGCGGGGAGCTGGTGTGTTTGAAGCCCATCCCGTGCCAGCCCACTCATTTCTGGAACGACGAGAACGGCAGCAAATACCACAAAGCCTACTTTTCTACCTTCCCAGGAGTCTGGGCCCACGGTGATTACTGTAAgataaatccaaaaacaggaGGAGTTGTCATGCTGGGGAGAAGtgaTGGAACCTTGAATCCTAATGGTGTTCGGTTTGGGAGCTCAGAAATTTATAACATTGTGGAGGCCTTTGAGGAAGTTTCCGACAGCCTTTGTGTCCCTCAGTACAACAGCGATGGAGAGGAGAGAGTGATTCTGTTCCTGAAGATGGGACCCAATAAGATCTTCAGACAAGAGCTGGTGGGGAAGATCCGAGGCGCTATCAGAGTAGCTCTCTCTGCACGACACGTACCAGCCTTGATACTGGAGACCAAAGACATCCCGTACACCATCAGCGGAAAGAAGGTCGAAGTCGCAGTAAAGCAGGTGATCGCAGGTAAGGACGTCACTCAGCGAGGGGCCTTCTCAAACCCAGACTCCTTGGACCTCTACAAGAACCTGCCCGAACTCCAGAACTTCTGAGTGCTCGGTACGTCTGAACTCCCAAATGTCCCGCGTTTCTGGGTCCCTTCGAAGGGTTCAGATTCTCTGGAAGTCTGTTGGAACTTTGGAGGAATCTGGAGGAATTTCTTGAGCTTTCAAACATCAAAGTTCTTAGTGTTCTCTACCTGTTGTGGCAAACTTGGCAACCCATTGGAACCGATGGAGTCTTTAGCACTTCCTCAGAAGGGTGACTGGTTCCTCTTGGAGAGAAAGCTTAGTGCCGTTTTATGCGATTCCAGCTTGGATCTTAAAGGGACATTTTATCTGTTTCTGTTATTGCGTCCACCAAGCGTTATATTTCCGAGGAAGGTACCAAAGTAATCGTCATTCCCATATTTTCCCTCTCAAATTTTGATACAATGTCGCTTTAACTGTGAAAGTATAGGAAAATATGGCTGAAAATCTCAAAATCGAAATAATTTATTCTCATGAATCATAAATCAAATACACAGACGTTACTGAGGATTGTGTATTGAAGGTTATTTTTCTGCTAAAGGCCATTTCTCCAGTAATACTGACTTTTTGGGTCAAACCGACTGTTTCTCAGAACCGCttacatttattagtattaatattacgGGTACAGGTTCCAGATTATGACCTGTTACCGTAATAAAATCAACGCACCTTTTTCAAAAATTCCCCCCCCAAAGCCTGACTTCCTGTCTGGAAGCatgaacatatttatatttttaaacaatatccTGTAAGTAAATAGCGTTTCATCACACCTGCTGTATTTGTAGAGTATATTATGCTGTCCAGAACTGCTCTCTGTTGTCTACTGAGTATAGATATGAACCGAAGCTGATGTAGCTCACTGGCCAAACAGATTTCCATatatttttccatatatattgtatatatttgattCCGTATATGCAGCTGCATGTTGCGTGCTACGCTAGATGCCCCTTCGCAGTGACACTATTTGGTCTCTTTCGTGGCGCCTTATATCAAGTTTTCATCAACAACTGAAGCTCATCTCATTTCTTTGAGTCATTCTTTGGTGTATAGCTTTATCATTGCCCACGAGGCGTTCTTCCATCACGCTTTTCATCGGAACACTGCACACATATGAAAAAACTGGGTTTGTTTGAGGTTTGAGGTTTTGAAAGTCAGCAAGACGTGATACCCAGATAACCGTATAACATTAGATTATTAGTTTATGTAACGTTTGCATTTGGAGTAAAGGGAAGAAACCTGGGCATTCGAAATTTATCTAACGCCGCAACGAAAAATAGAAAGTATTGATTTATGTCGGATCAGATTCAAGCTCTTTGACGTGTACTGATGATGCATTTACGCTCGCTTTGCAGCATATCTCAGAAACATTTATCAACAGCAAGCCGCCATCCAGAAAATCTTTTTCTCGTGACACTGAGAGAGGATACGCTGCAACCCGCTCGCAACGAAAGCCTAAAAATGCGCTGCGTTTTAatcgttttaaaataaattcgcGCCAGTAATGTCATTTCAGCGCTTGTTTACAACAGAGAAGCCTCAAACGCTAGTATTGATGTACATTTGACGTTTTattgggtcttttttttttttttggttcgaATAATGTAATCTAGGTTTGTTACAcgtttgaaaatgacatttttaaccTGTGAGTATATACGTTTGATCTCAGCGAGGATTTTCCTAAAAGATGCTACACACTACACAtctaaaaaatgcaaatgattttACATACATGCTAAAGGTTAGACATAATGAAACTCGAAAGGGCGTGCTGGGCCTTTAAGAGGCTAATTTCTTTTGAATTGAAACGGTTTAGAATAGAGGTGCAGATGGCAAGCAGTTGTGCAGATCGCTTGAATTTAAATCAGCCCTCGTTTCCGCTTCAGACAAGCAGGGACGGGTCTGTTTCACCTCATGCCCACCCTCGTGCCACCATATGCCCCATATCTGCTCAGCTTTGCTGACAGGACTGGTCTGGGACTGTGGACATACGGAAAGCTACCGAATCCTTATTTATTGGCAATCACTGTGGATTTCACTTTAACCTCTGGCTTGTCGCGAACGCATTCGTCCTCGGCGTTTATTTCATGTTTCCATACTTACCAATTTCATGAACATTCCATGGAGATCTATTCCATTTATTACAGTTCTACTACTTCTTTTTGATACAAGGAATTGGAAATGTTGGAAACAATGTTCCttattattgtattacattaaatgtatttggtGTACTACTAGTAAATACAAGGTGCTTTCTTCTTGGTGGCAAATGTAATGTTTCCtgctttgaaataatattattgtacatCGCAGAATGTGAATAATGATTACTAATATAGTTGAGAATATATTTGTTATGGGTATATTATGCCCATATGCTGTTGGACCGCTTCAGTTATGCTCAATAGGAACATACCTGTATTTCATGTGTAAAGATGCGTATTGTACTCCTAATTAAAGAGCTAAAAAATTA

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0030729 acetoacetate-CoA ligase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01907 AACS, acsA; acetoacetyl-CoA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251035.1 lncRNA downstream 182197 5142578 ~ 5169249 (-) False LOC122345808
XR_006251034.1 lncRNA downstream 182197 5142578 ~ 5169249 (-) True LOC122345808
XR_006251036.1 lncRNA downstream 182197 5146350 ~ 5169249 (-) False LOC122345808
TU49076 lncRNA downstream 275412 5075761 ~ 5076034 (-) True G33334
TU49075 lncRNA downstream 297543 5034111 ~ 5053903 (-) True G33333
XR_006250957.1 lncRNA upstream 193895 5574164 ~ 5597629 (-) True LOC122344984
TU49160 lncRNA upstream 201874 5582143 ~ 5584600 (-) False LOC122344984
TU49165 lncRNA upstream 207776 5588045 ~ 5589905 (-) False LOC122344983
TU49166 lncRNA upstream 207776 5588045 ~ 5595174 (-) True LOC122344983
XR_006250956.1 lncRNA upstream 208658 5588927 ~ 5595020 (-) False LOC122344983
XM_043240589.1 mRNA downstream 17942 5169712 ~ 5333504 (-) True si:dkey-215k6.1
XM_043240689.1 mRNA downstream 337505 5008086 ~ 5013941 (-) True rnf215
XM_043240688.1 mRNA downstream 350390 4949084 ~ 5001056 (-) True zdhhc8b
XM_043239098.1 mRNA downstream 403493 4927327 ~ 4947953 (-) True si:dkey-112e17.1
XM_043238165.1 mRNA downstream 793603 4487841 ~ 4557843 (-) True galnt9
XM_043240187.1 mRNA upstream 3286 5383555 ~ 5388325 (-) True LOC122345752
XM_043238772.1 mRNA upstream 8550 5388819 ~ 5393629 (-) False poli
XM_043238771.1 mRNA upstream 8550 5388819 ~ 5393629 (-) True poli
XM_043238769.1 mRNA upstream 18625 5398894 ~ 5410494 (-) True ankle2
XM_043238768.1 mRNA upstream 18625 5398894 ~ 5409114 (-) False ankle2
TU48850 other downstream 728388 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 1158365 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other downstream 1158365 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other downstream 1158365 4144927 ~ 4193081 (-) False LOC122346168
TU48804 other downstream 1456971 3885550 ~ 3894475 (-) False piwil2
XR_006251120.1 other upstream 50995 5431264 ~ 5431394 (-) True LOC122346225
unassigned_transcript_954 other upstream 576030 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 1443902 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1543161 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1550603 6930872 ~ 6943203 (-) False usp20

Expression Profile