RNA id: XM_043240078.1


Basic Information

Item Value
RNA id XM_043240078.1
length 8499
RNA type mRNA
GC content 0.44
exon number 12
gene id whrnb
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8886982 ~ 8938072 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACACGCGGCTTCATTAAAtcactctcacaaacacacataggGAGATAGAAAGGACAAGGGAAGATATTAGGTATTTTAGCACTTAATTGAATTTCTGTCGTACATTTTGGAGCAGTtttgagtgtgtgcgtgtgtgtgcctTTGGTGAGTGAGTCATAGTGATACGTGACTTACAGCTGAAGTGTATTCACTTCTACAGTGCATAAAGATCAATGGGCATCTCTATTGTCTCATTTAGGCCCATTAATTGTTCATTAATTTATGCCACCGTGCGCCTATGCCAAGAGCGGTAATTGCAAATTAGCAATGAATTTGACTCTTTTGCTGCAATGTCACCATCTTAAAGGTATGTGACACCCGAAAGAATGAAGAAAGTTCGGTTGAGAGGttctgttatcattttaaatcaagcatTTAACAACTGAGGCTGTTGTTGCTTACTTTAATGTTAATTACGTGCTCACGTTTATTGTATTATACTGCACTCTGGTTTATTTCATtcgtattttatcattttatttagcaccGATGCACTCTCCCTGGCAAAACAAATGCAGGTTAAATACAGCCTTTAAGAAAGCAACAGTCTGTCTATGTGAGTTTACTATTAACCCTCAGGGAGACTATTGATGTGCCGTAGGTTGTGGATGTCTGCTGACAGGCCTTTCTAATTCCTCTTTATGAGCTTAGAGGATGACACGTGCGTTTCAACTGAGCTTCCCCAGCAGCTGAAATGCACAGACTGGACTAAAACCTTGCGGCTTGTCTTTTAAGCACATCAGACAGCCTACATAATAAggataattattattgtttaaaacaattcaCGGGCTGCCATGAATGTGCACGAATGGATTATGCAGCTCTTCTCAGCAGATGCAGCATTATACACAGCCTCTGTGAGAGTTGGGTTCTCACAACACCAGCCTGATTTGAGCAGAGCTGCGTTTTAGATGTAATATTACTGTCTTTGCCCAGGCAGACACAAGGGATTAGAGAGCTTCAGGTATAAATGGAGCACTCTcaaataaagcacacacacataaatgcgTCCAAACACTGCCCTCGTTTTGTAAATCTGATCAAAACAGCTTTCACTGACCCGTCTTAACTTAAAAAGAGAAATCAGCTGTAAGATTGAAATGTAAGGGCCTTTTTCATCTGCACCgagacatttctttttaaaatgttccaaaGGGAGATGTCAATCATAATCGGATTTGGTTTTCATTGGTcattactgaaaaatgtatttaggtcaCTACTATTCTGaaagtttttctgtatttgatgGCTCCCTGGaacacttcattttgattggtcagcTGTGGCTTTGTTAGGTCAAATATTTTTGATCTTTAAATTGGATGTTCCAACATTGCCATACTGGAGATTTGATAATTTAAGATCTCAATATTAAATCATAAGTATGTACCAGCATTTGTCTTCCCAGCTAAAACAAATTTTGTTCTAAAATGTCTTGCTAACATACccaaaaaattatgaaatgttctctgaattttcaaaacattttcagtttatctTGGTTATGGGAGCGTTATGGGACTTTTACAGAAATTATTGAAATGCTTATGTTGAATGTTCTCTTAATCATCCAAATCATGAACgtccaaataaaatgtttcagagaAACGTTGAGTCAACAATgcaaataatagaaatataaattttgGGCTAAAGCAAGAACTTTATTAAAGACCAGTTAACTCtgaattaacattatattaacagCACAACAAGAATGATCACATTAGAGAACCTTGACAAAATGTTAGCCGACATTCTGAACAACGAGTTGTTGCttcaaagataaataaataacatttagagGATCTGTCAGTGGCACATACGTGTTAAGTTAAAATCAGGTGACTGTGGTTTCTCCAGTGTTTCCCTTTGAGAACTTTTACGTTAAGTGCGCAATGCTCTTTGGAAACGACTTATTTTTCAATTGATCAACGTCAATAGCCCGGTGgccttgaaaattaaaaatagctcacgcacagaaaaaaaaatgtagtttagtTTGTCCAAATGCGTTCCTCACAGTTGTTTGTTCCTAAGCAACAGAGGCGCCTCGCGCGTGCGTCATTTCCTCCAGAGCGCAGTGTCGGTATCTCACTACGGACTCGGTAGTAGCGACAAGAAATCCGAGCGAGCCGCACTGACCAGACGCGCTGCTCTTCAGAGCTCAGCAGCCAAACTTCAAACCTTCgtgctgtgtttctgtttctttttcggAGTGGGACGCGTCTCGCCACCGGTTCCTCAACGCGCAGTGTCTTACCAAAAGGATTAAAGTCACTATAACGGACGTCAAATCCTCGCGGGACTTAATTCGGGTTTGTTGTTTGCCTTTGAAAGAAGACTGTAGTTTTTCCACTCTtcaaagtgatttatttaaCCGATTTCAGCATTAATCAAAAGTTTCCAAACTGCACCGCGCTAGTTATTCCGCGTTGTTATTTTGAAGACTTAACTCGGCATGGCTGGTCTCACTACAGGTTAACGCACGAATCGCGCCGCGCTTCTGTTTTTAGCGAGAGGCAGCGATCGCGCTCTGTTCCTGATGCCTGATGTGAAACCCCCCTGTGGTTTTGAGGTGTCCGAGAATGAGCACGGAATTGGAGCGCGCTTCTCTCAAGTCGGGCGCGAACTCCCTGGGCTCCGGTGGCCGCGCGCTTTCCGTTAACGTCAAGAAGTTGCACAACGCGCTCAACGTGCTGCTCAACGACTTCGAAAGGGAGCAGTTCATCCACTGTCTCAACGTATACCACGCCAAACGCAATGTCTTTGATCTCGTGCAGACTCTCAAAGTCATTCTCAACACACCCAACAAGCGCCAACTCTTACCCATGCTTCGCCTGGTCATACCCCGCTCGGACCAGCTGCTGTTCGACCAGTACACATCGGAAGGGCTTTATCTGAAGACGGATCTGCTGGCGGCCGGTGTCAAGCACGAGTGCTCGGATGACCACGGAAGCACGAACGCTCACGCCGGAGCATCCTCCGTGCACTTTCTGCACGAGTCCGAGCAGGCCGGTCCCAGTCACGGACCCGTGCGGCAGGCTCCGGTTTTCAGCACCGCGGCTGAGGGGACAGCGCCAGCGCTGATGCAGGAAGCGCCCGATGAAATTCGCCAAGTTACGCTGAAAAGGAGCAAGAGCCATGAAGGCCTGGGATTCAGCATACGGGGTGGGTCAGAGCATGGAGTTGGCATCTATGTGTCTTTGGTGGAGCCGGGATCATCCGCTGAGAGAGAGGGGCTCAGAGTTGGAGACCAGATCATGCAAGTCAATAGCATGGTGTTTGACCGAGTCACTCATGGAGAGGCAGTCAAGGTATTAAAAGGCTCTAAGAAGCTCTCGATGTCGGTCTGTTCTATGGGACGAATCCCAGGTGGTTACGTGACCAATCATGTGTACACATGGGTGGACCCTCAGGGCCGCAGTGTGTCCCCACCACCAGACCTGCTGGAGCAGCATGGCTCAGGAGGAAGACTCTTGGACGTTCAGCAACATGGCCACACACACATTCGGCACGAGGGTGGTGAGAAGAAGGTGAATATCTCACTGGATGATGGGCGATCTTTGGGCTTGATGATCCGTGGAGGTGCTGAGTATGCTCTGGGCATTTATATCACCGGAGTGGACCGAGGGTCTGCTGCAGAGTACAGCGGACTAAAGGTAGGGGATCAGATTCTGGAGGTCAATGGGCGTAGCTTCCGGAGCATCTCTCATGACGAGGCCGTGCAGATCTTGAAGAATTCCCGCCACATGCTGATGACCATAAAGGACGTGGGGCGGCTGCCTCACGCACGCACTGTGGTGGATGAGACCAAATGGATTCCCAGTGCACAGATCGCTGAGAGCTCGGCCAATAGTAACACCCAGAGCATTCTGCCTGTTGATGTTGCAGCAGGAAGTTCAGGAAAGTCAATCTGTTGTAAAGGTGTCGTGCCAGCGGTCGGAGCGGTACGTGCAGGAGCCTGGAGCTCACTGGAGGAGCAGGCGTACATGCTtctgacagagacagagagacagaccaTGAGCTATTACATTCAAGAGTACCAGCGCGCACATATCGGGGTAGAGCCTCTGGCCATGGCCCTGTTTGAACTCTTCAACACACATGCAAAGCTGTCCTTGCTGGCTGAGGTGCGGACCCTGGTCGCTCCGCAGGATCTGGAGCGATTCGATGGGCAGGTGTTACATCACGAGATGGAAGCGTGGAGAGTACGGCACGGAGGCTCGGGCCTCCTGCACCCCGACTCTATCTGCGTCACCCATCCAGACGGCCACATTCCTGCTGTCTGCCAGCTGACCACCGCAGTCCCTGGCTACAACAAGAATGAGTGCAGGTTGGAGGGGAGTTTGATGCCACTTGAGGGTCTAAATTCTCTTCCTGATGTTTCTCTGgacAAGGTGCAGCCGTCAACCGAATCACCCCCCTCGTTCAAGCCTCCCCCTCCACCTGTCCGACACGCCAGCCCTAAAAATCAGACCAAACGACCTTCGTCCAAGCTGTCCCAGACCAATCTTCTCTTTACCGCCCCCTGCAGGCGGCATCAAGAAAACCACACCCACAATCACTCGCACTCGCCCTGCTCTGCTCACACCTCCCCGTGCACCATCCACCACACCACCTCCACCTGCTCCGTCCATCACACTCCTCCACCCTGCTCTCACCATCACAGCTCTCCACGGTCATTATCCTACCACGCCAGCCCTTCTTCTGGACCCCCGTGTAAAGATTTGGTTCAGTTTCTGATGAGCAGGCAGGCGGCAGTGCTCTCCCCGCACCTAGAGTCTCCAAACCGTTCCAGAGACGGAACCCCCATGATCTCTCCGCGCTCCTCTCCATCCATTTCTCCTTCGCTGCTAATGCCCGCGCCGCCCCCCTGTAGCCCCGAGAAGCTGGAGTGCTCGTCCTCTACACACAGCTGCGGCGCCACCCAGACCAGCCCGCTACACCCCGAGCCGGAGACGACAGAGGAAAGGCCTCAGCCCCAGCTACGAGGAGCCACGCTGTCCCAGCTGTCAGACAGCGGACAGACTCTGAGCGAGGACAGTGGAGTGGATATCGCAGAGGCTGGGGGGTTGAGTAAGGACAGCAGCCCGCGGCCAGGTAAACCTCCCTTCCTCCAGGTCACAGGTGACATACGCAGAGCGGAAGGACTCGCACAGGCCACCGCAAAACACATGGGAGTAATGGAGCCTACACTTGTACGGGTGCCCAAGTGTGCCAGTACACTGGGGATTGCTGTTGAAGGGGGTGCCAACACCAGACAGCCTCTGCCACGCATCGCCACCATACAGAAGGGGGGCTGCGCGCATATCTCCGGACAGTTACGGGTGGGTCAGGTGATTCTGGAGGTGAACGGCGTGTCGCTTAAAGGCATGGAGCACCGGGACGCAACTCGGGTCATCGCCGAGGCCTTTAAGACCAAAGACAAAGACTATGTCGACTTTTTGATCGCCGAGATCAACTCTGCTCTGTAGAAGTCGTCCCTCGAGAGTTTTGCTATTTTCCACTGCGAAGACCTTGCACTTTACGTCACGTCCACACAGAGGGGCTGAATGAGTCACGCTTGTCATATCTGAGTCACAGTTAGCTTAGAGTTCAAAAGCTGCAACACGCCCACCTTACGTCTGTGTTCTCGCTGTAAGAACACCTTCACTGAACCTCTGCAGAGCCGAGACTGTGGCTGATATGTTTGATAGGACGAGATCAGGGTTGTATCAAGTCTGTCAGATCTGtgccatacacacacacacacacacacacacactctaccgTTAGGTTCGGGGTCTGTATGATTTCTTATGTTTCTCTTATGCTGTCTTATCTGtctatattttagtatattttactTCGTATACCGTTGCTTATGGTATTTGTTGTTACatgatcatttttaattcactcCGATACGCCGATTTGGTGcttgaaaaacatttctcatcatCAACGTTAAAAACGATACTTCTTTGTGGAAACCTTAAAAGTCGATACGAgcattttcaggattctttgataaattaaaagttcaagagaacagcatttatttcattttgttttcttttttttttttataaaactaaaattttactttttcaatcaattttaaaacataccgaccccaaactttttaatgcTAGGGttgcatctatatatatataatcaaatccTTCATTACTTTCTGTTCATGTTTATTATAgctaatacatatatacagaaatatatttatacggaaatatataaatatctacaGATTTGCTAttacagttcttaaaagaaaatcacatatCATTTCAGTCGTAATATCAAATAGCATAGtcattgtatgtttgtttgttttcactctTCGTTGATTCCAAaggtctttatttatttatttttaatgaaaggaaCTGAATTCAGTGGAAGTAGTGAAATTAAGTGTTATTAATACGCTGTTGTAATATGTGAATGGAGATTTATTTCCGGACAGATGGAGCGAGGAGGAGGATTCGAGAGTATCGCACtgttttttcattctgttttttctgttcttttcctctctgtctctctcacaaaACCAAGCTCTTATATCAGTGTGCAAACTTCAAAGAGAGAAATAATGAAGAAATGcatagaagtatttttttgaagAGATTTGAAGAGATGTTCGGTGTCAGaattatatgtaaatgcatggCTCCTGATTATGCAACATACAGAGAGAGTTATTGTACATAGGTAAAATAATGTAaagctgtatatattttatttatgtaatatattttttgcacataCTGTTGATATAATGTTTTCAATGACtgcatcaaaaacattaaaacccTTAAATATGAAACCAAAACATCAATACTTAGAATAGTAACATAGAAGCATATTAGTTTCTCAACCCAGAGGTTGTTGTTCCCTTCagatatttaattcataaaccACATACCATTATCCAGACAGTCTGTCTCTAAGTTTATAAAGATTtgctttttgttcatttgttgcTTGTCATTTGTCGTACTTcgcaatgtgaaaaaaaaaacataatattgtaaCTTTACAGGAACTAAATTATCGTAGACTTTCAAAACAACACCATATAAAGACAGCGCACAATCCGAGGGTATCAATATTATGcctgaaatatttatgatttatgccAAACTGGAAAAGAgacttaaataaatatttaaagacgGAATTAAATGTCtgcacttattattattattattatttttcccctTGGTGAAATCGTATTGTTATCAGCAAAAAATGTGTGCCTCTGTTATCTGATGAAGTTGTGCTTTGGCGCCCTCGTGTGTTCAAATGAAGCACATGGTTTTAATCTTAAATGTTTGCAATGACAGTactatatctaaatatattatacCTCTAcctattatacatacataatgcaattaatcaatcttttgtttttataatatgacACCATTCAAAGTCGTGTAGGTCGTTTTAAACATtagcaaaacattattttaaacaaacaggtctgtggatgatgcagtcaatatgtgACTGCATTATGTATTGCAGTATCGAGAAAGACCAGCGATTTACGTGAGAATGTTACTGTTAGCTTTTAACACCATCATCCCATCACCCCTCCAGCccaaattaaaggaatagttcacccaaaaatgaacatacaagacattttgaagaaagtttgtaaccaggctgttttggctCACAGTTGATTTCTATAATAGgaaaatactatgaaagtcaaactttcttcaaaatatcttcatttgtgttcagcagaacaaagacatttatacaggtttgggaATATTctagggtgaataaatgatgacagaattttcatttttgggggaacTATTCCTTCAACTCAGCTCTCCGTGCCCGACTCCGTCTGTCAGTGGGTCACCAGCGTCCTGACCGGCAGGCGACAGCTAGTGAGGCTGGGAACATTTTCATCCAGCACCCATATAATAagcactggagctcctcagggctgtgttCTCTCCAcactgctcttctccctctacacCAACGACTGCACCTCTAAAGACCCCAAGCTCCTgaagtttgcagatgacaccACACTCATTCAGTACAGTGAcgagtctgcttacagacaTGAGGTAAAAGAGCTGGCTGTCCGGTGCAGTCTCAACAACCTGGAGCTCAACGTGCTCAAAACGGTGGAGATGACGATGGTCTTCAGGAAGAAACCCTCTCTCCCCCCCACACAACACTAttatactttaatttatttaacaaaacatgcttatttacattttaaatttgcgCATATCATACctgtacatgcatacatgtctatatattatgtttttgctattttgtacaatgtttttttatgtcttgTTGGAGCTTCTGTCACTTCTGTCATTTCTCttatgtgtaaacatacctggcaataaagctCATTCTGATTCTGAACATTAGATTATTACAACGAA

Function

GO: NA

KEGG:

id description
K21879 WHRN, USH2D; whirlin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50795 lncRNA upstream 12287 8874095 ~ 8874695 (+) True G34470
TU50787 lncRNA upstream 22781 8862846 ~ 8864201 (+) True G34466
TU50752 lncRNA upstream 244301 8642191 ~ 8642681 (+) True G34449
TU50715 lncRNA upstream 321486 8564645 ~ 8565496 (+) True G34418
TU50681 lncRNA upstream 347264 8532539 ~ 8539718 (+) True G34409
TU50798 lncRNA downstream 193 8938265 ~ 8939370 (+) True G34472
TU50809 lncRNA downstream 55824 8993896 ~ 9001220 (+) False G34480
TU50825 lncRNA downstream 55824 8993896 ~ 9001220 (+) False G34480
TU50811 lncRNA downstream 57326 8995398 ~ 9001220 (+) False G34480
TU50814 lncRNA downstream 61188 8999260 ~ 9001220 (+) True G34480
XM_043240079.1 mRNA upstream 1118 8878270 ~ 8885864 (+) True noxa1
XM_043239772.1 mRNA upstream 16183 8864202 ~ 8870799 (+) True man1b1b
XM_043239612.1 mRNA upstream 70975 8725194 ~ 8816007 (+) False cacna1ba
XM_043240270.1 mRNA downstream 12312 8950384 ~ 8972068 (+) True niban2b
XM_043240274.1 mRNA downstream 34845 8972917 ~ 8991023 (+) True npdc1b
XM_043240275.1 mRNA downstream 34847 8972919 ~ 8991023 (+) False npdc1b
XM_043239829.1 mRNA downstream 70454 9008526 ~ 9016381 (+) True traf2a
XM_043239830.1 mRNA downstream 70454 9008526 ~ 9016381 (+) False traf2a
TU50789 other upstream 15464 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 582831 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 876383 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 1089014 7754074 ~ 7797968 (+) True p2rx1
XR_006251015.1 other upstream 1320406 7558940 ~ 7566576 (+) False svopb
TU51316 other downstream 858318 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU51450 other downstream 1126145 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 1791046 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 1988751 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 2108408 11046480 ~ 11062314 (+) False map7d2a

Expression Profile