RNA id: XM_043240090.1


Basic Information

Item Value
RNA id XM_043240090.1
length 1596
RNA type mRNA
GC content 0.38
exon number 9
gene id si:dkey-193c22.1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14876022 ~ 14880073 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGGTACAAGCAGTCAGGAAGTTAATGCCCTGAATGCGTTCATCAGGGCATACGGGATACTGGGATGTCATCTGCAGGTATTAGAACTACAAAAtagcttaaaaataatgatTGCGTTGAAGTTCTATTTCTCTCTTCCAGTGGTGGCAGGGGCATTATTAGTGGGCCTTCCTTACAGTATCTCTCTAGTTGCCCAATGGCTCTATGGCTGGCCCAATAAACCAggttatcaaaaatatatagaggCTCTCAAACCAAGGCGCATATACTGCCTTACAAGAGCCGTGCTGGAGATGTTGAAATATCTGCAGTATGGCAAACTGTACTTTCAGTGGAAACTGTGGTACagtaatgacaaaaataacaagCACTATGTGAAAGGTATAACCTTTGGCCGACGAGGGAACAAACTAGATTTATATTATTCACCAAGCATGGGCCGTTCTGATACTGCTTGTGTTCCTGtggttgtgtttgtgtatggAGGTGCCTGGGGATCAGGAGACCGCTCCATTTACTGTCTGTTAGCTTTACAAATGGCAAAAGAGCTTAACGCCTCTGTAATTTGTCCAGATTATTCCATATATCCGAAGggaaatgttttaaatatggttCAAGACATCACTGACAGTTTGATGTGGGTGAGAGAAAAGGGACAAACATTCAATCTTGATCAAgaCAACATAATATTAGTAGGTCATTCAGCAGGAGCTCATCTGTGTGCCCTTTCCACACTGTTTCTGGTGaacaatgcagaagagctgTTCATTGAGACCAACACACAGAGAGATCTTGTATCTGCTATTAAAGGAATCATAGgtTTGAGTGGCGTTTACAGTGTAATGGATCATTATAATCATGAGAAAATGCGGGCAGTTGAATATGTGTCAACTATGCACAAAGCTATGGATGGTGTGGAGAACTTTGAATATTATTCACCAACATCATTACTCAAGAAACTGAATGAGGATCAGATAAAAcgAGTTCCTCCGGTGGCTCTGCTCCATGGAACCAATGACATCATCGTTCCGGTGGAATCATCAGTGAAATTCTCCGAGCTCCTCAAAGCCCTTTCTATCAGGATGTCTCTCTATCTAATACCTAAAATGAACCACGCAGAGATAGTCACCGACCTTATGGCTCCAGACAGGCACTTTTACCATACTGTTTATGGCTGTATTATACAGGAGTACAGTAAATTTCAAGGTTATgctgaataatttttttcattcattgctAATATCATTTTTCCATTATGTCAGACAGTCATTGTTCTTTGTGTAATTACATTCACGTTTTAATGACTtcagaattgtttttattttcaatcagAAATATGTTCAATAACCCATTATACAAGATGGCAGGATCAGAGAAAACAACCTCTGTGCTTGTTAATAAATTCTGtacatgtttaaatgtaatagataaagaataaataaatacaaatatgtattgtgtttaaatataacatGGATGGATGAATTCTTACTTTGCATTTGTATaagtaattttttctttaatatgtgTCCTAATTAcggaattatttttgttgcataTTCACTGTTCACCGCATATTAAACAACATAAGctta

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K15889 PCME; prenylcysteine alpha-carboxyl methylesterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54076 lncRNA downstream 177069 14698736 ~ 14698953 (-) True G36696
TU54002 lncRNA downstream 223629 14652095 ~ 14652393 (-) True G36631
TU53966 lncRNA downstream 387294 14485814 ~ 14488728 (-) True G36602
XR_006250925.1 lncRNA downstream 408245 14464304 ~ 14467777 (-) True LOC122344807
TU54099 lncRNA upstream 792 14880865 ~ 14881065 (-) True G36708
TU54112 lncRNA upstream 25312 14905385 ~ 14905621 (-) True G36714
TU54241 lncRNA upstream 288974 15169047 ~ 15169358 (-) True G36811
TU54472 lncRNA upstream 681649 15561722 ~ 15562078 (-) True G36967
TU54473 lncRNA upstream 682075 15562148 ~ 15562363 (-) True G36968
XM_043240085.1 mRNA downstream 545 14812557 ~ 14875477 (-) True wdfy3
XM_043240082.1 mRNA downstream 3696 14812557 ~ 14872326 (-) False wdfy3
XM_043240086.1 mRNA downstream 3697 14812557 ~ 14872325 (-) False wdfy3
XM_043240083.1 mRNA downstream 3697 14812557 ~ 14872325 (-) False wdfy3
XM_043240084.1 mRNA downstream 3697 14812557 ~ 14872325 (-) False wdfy3
XM_043239465.1 mRNA upstream 26511 14906584 ~ 14917764 (-) True snx18a
XM_043239467.1 mRNA upstream 38853 14918926 ~ 14919939 (-) True hspb3
XM_043240362.1 mRNA upstream 136826 15016899 ~ 15023456 (-) False fsta
XM_043240363.1 mRNA upstream 136826 15016899 ~ 15023456 (-) True fsta
XM_043238533.1 mRNA upstream 241923 15121996 ~ 15128172 (-) True isl1a
TU53907 other downstream 573641 14292063 ~ 14302381 (-) True LOC122345141
XR_006250968.1 other downstream 819317 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other downstream 819317 14045477 ~ 14056705 (-) True rnf214
XR_006251003.1 other downstream 866486 14001934 ~ 14009536 (-) False tmprss13b
XR_006251010.1 other upstream 325878 15205951 ~ 15264945 (-) False pdzd2
XR_006250970.1 other upstream 415945 15296018 ~ 15308440 (-) False zfr
XR_006251075.1 other upstream 469943 15350016 ~ 15367413 (-) False npr3
TU54482 other upstream 693038 15573111 ~ 15574817 (-) False alkbh2
TU54484 other upstream 693185 15573258 ~ 15574817 (-) False alkbh2

Expression Profile