RNA id: XM_043240111.1


Basic Information

Item Value
RNA id XM_043240111.1
length 931
RNA type mRNA
GC content 0.53
exon number 4
gene id LOC122345702
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2607214 ~ 2609585 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCGGTGCGCTGAGCGTGTCGTCGTGTCGTGTCGTGTCGTGTCGTGTCGTGTCGTGTCGTGTCGTGTCGTGTCGTGTAAACTGAGATGAGCAGCAGGAGGTTCAGGGCTGTGGTGGGGCTCATGAAGGTCCCGGAGCGAGAGCTGATGGGTGATGTTTTATTACGCGACAGCGCTGAGCCCTCGCTTCCGGTTCACGTCAATATCGGTAAATTCGTCCGCTTGGATGACGGCCGGTATATCGACACCGAGGACCGGGATAAAGCCGTGAGGAGGAGACAGCTCGCCAACGCCAAGGAGAGACTCCGGGTCCGGAGTCTGAACAGCATGTTCTCGTACCTGCGGCGCATCGTTCCGGTCATGCCTCGGGACCGAAAGCCCAGTAAAGTGGACATGCTGAAGGCCGCCACCGAGTACATCCGGCTCCTGTCGGCCGTCCTCCATCACTCCTCAGCCGCCAGTAATGGAGATGCAAATGTTTTGCTGGAGACCGGGATCAACTGCTCCAGCTTGGAGACGGACTGCTCTGATCTCTGGAGCATGGAGGATGTCCTGGAGTCTCCGTCCAGCCCCTTTCTGTCGGAGAGCGTGCCGAACGCAGCGGACGACGAGCTGGATCTCGGGAACGTGACGGTTCAGTGCGTGGTCCCCATGTACATCGTCCAGGTGGCGTCCGAGCAGACCGTGATCACCAGCACGCTCCCGTCTTAACTGGGGTTCAATGTTATATCACTGATTCATGCCTCTGATATTAGTAGAGTTACTAAAACATGTGAAGGAAGGACGATCGGTTTGATCCTGACGTGTCGTGggaatttattttgtatttattttcaagagCCGACTCATTTACATATAAGAGAGAGaatgtatatgaatatgtggaattaacacatttatgattttcaaatgtgaataaattgtaaataggta

Function

GO:

id name namespace
GO:0008585 female gonad development biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09066 FIGLA; factor in the germline alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251082.1 lncRNA downstream 171514 2433286 ~ 2435700 (-) True LOC122346060
TU48232 lncRNA downstream 182402 2422985 ~ 2424812 (-) True G32740
XR_006250936.1 lncRNA downstream 222513 2383907 ~ 2384701 (-) True LOC122344845
XR_006250939.1 lncRNA downstream 227819 2377967 ~ 2379395 (-) True LOC122344860
TU48218 lncRNA downstream 231551 2374002 ~ 2375663 (-) True G32727
TU48406 lncRNA upstream 42859 2652444 ~ 2728807 (-) True G32870
TU48421 lncRNA upstream 140374 2749959 ~ 2797599 (-) True G32881
TU48423 lncRNA upstream 155698 2765283 ~ 2766771 (-) True G32882
TU48425 lncRNA upstream 158194 2767779 ~ 2774190 (-) True G32883
TU48427 lncRNA upstream 159616 2769201 ~ 2770371 (-) True G32884
XM_043239244.1 mRNA downstream 1297 2586587 ~ 2605917 (-) True add2
XM_043239248.1 mRNA downstream 1298 2586587 ~ 2605916 (-) False add2
XM_043239252.1 mRNA downstream 1300 2587458 ~ 2605914 (-) False add2
XM_043239251.1 mRNA downstream 1300 2587579 ~ 2605914 (-) False add2
XM_043239261.1 mRNA downstream 1300 2589701 ~ 2605914 (-) False add2
XM_043240515.1 mRNA upstream 214586 2824171 ~ 2866043 (-) True tet3
XM_043240518.1 mRNA upstream 214586 2824171 ~ 2855093 (-) False tet3
XM_043240517.1 mRNA upstream 214586 2824171 ~ 2855093 (-) False tet3
XM_043240516.1 mRNA upstream 214586 2824171 ~ 2845284 (-) False tet3
XM_043240519.1 mRNA upstream 214586 2824171 ~ 2843067 (-) False tet3
XR_006250982.1 other downstream 1299 2587553 ~ 2605915 (-) False add2
TU48396 other downstream 21788 2580548 ~ 2585426 (-) False snrnp27
TU48378 other downstream 53068 2496504 ~ 2554146 (-) True G32857
TU48163 other downstream 584320 2020108 ~ 2022894 (-) False LOC122344636
TU48139 other downstream 639466 1966637 ~ 1967748 (-) False G32676
TU48454 other upstream 326158 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other upstream 341877 2951462 ~ 2960177 (-) True G32908
TU48805 other upstream 1275840 3885425 ~ 3894475 (-) False piwil2
TU48804 other upstream 1275965 3885550 ~ 3894475 (-) False piwil2
TU48820 other upstream 1535342 4144927 ~ 4193081 (-) True LOC122346168

Expression Profile