RNA id: XM_043240116.1


Basic Information

Item Value
RNA id XM_043240116.1
length 2729
RNA type mRNA
GC content 0.37
exon number 5
gene id LOC122345703
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11073890 ~ 11099337 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAACCTCAAAGCAGCTGATGGGTTGGATAACTGCAATTTCTTCTGAgggaaaaatattaaacatgacatgaaattgtttttaaacagactGTGCCCATCTCATATGATGCATTATTACTAGCATCACGCTGTCCTTttgaattataaataatgtgACACAATGAAATTCCTCTTTAATTCATGTATCTTTGGCATCAATTGCTTATAAGTATACCTTTGTTTTCCCATTGATTCTGAATGTTCTTTACTGTATGCTGAGGTaaatgcatagttttttttttaaactaaatatctgTATTCAgagagtattaaaaaaaaaatgttacaatgatAAATGAGCCTTATGGGTTTGATACAACGTGGGGAGCAGCAGATGAATCTTTGATTTTTGATGATACGGTCTCTTCCATTTTGACAACAAGGTTGCGATCATGTCAGAAACTGTGTGTAGGCTCAGGAACTGTTACCTAAAAGGTAATATAACCTGCATAGTTGAGCTACAGGAGCACTGTAAGGTAGGTACAACTTGCGTGCTTAGCAAACATTTGTCATCACAGCTCCCTCCCTCTTGCGCTCTACTTCCTTATTGTGCATATAATGCTTTGGAGGACCGTCTGACTAACAGTCAGTCCTCCAAATGAttagacacaaacacataaagaaGGAATAATGAAAggaaatttaaaattattgttttgtgcTTTGACTGGATTATCACTAACTGGATTTGTTTACGTGGCCTTTACATCCCACTGGATGAAGCTTTTATACAATCGGCCCAATATGTTTGActcACAAGGCAACTTTCTTCACATGTCACCATGGTTAGCCCCAATAGTTCGGGAAGGAACTTTTAATCCCACACTGATTGATGcgatttataagaaaaaaaacatcaccatAGCAACTACAGTCTTTGCGCTTGgaaaataCACACAGTTCCTTAAAGATTTCCTGGAGTCCGCGGAGCTGAATTACTTTGTTGGATTTTGTGTGCATTATTATGTGTTCACCGATCTTCCGGAAAATGTTCCTGAAGTGAAACTGGGTGAAGACCATCATCTTACAGTAATGAAAGTGGCCAGTTCTAACAGATGGCAGGAGATCAGTTTGAGCAGGATGGAAAGGCTGGAGAAACTAATCGAAAGTCGATTGATCAATGAAGCCGACTACATTTTCAGCCTTGATGTGGATTCGAAGTTCTACGGGCGATGGGGGGTAGAGTCTTTGGGTCGTCTTGTGGGTGCTATACATCCATGGTATTATAATACCCATCACGAATGGTTCCCATATGAACGCAGGCCAGAGTCTCAGGCATACATTCCTTATTCTAAGGGGGATTATTATTATGGAGGAGCTGTCATCGGTGGCTCAGTGAAAGATGTATATCAGCTTGCTAAAACCTGCCGGGAGCAGCTGGACATTGATAAAGGTAACCAAATCGAGGCGGCGTGGCAGGAAGAGTCTCATCTCAACAAGTACTTTCTGTATAACAAACCCAGCAAACTGCTTTCACCTGAGTATCTGTGGGATGACAGAAAATCTAAACCTTATGAGATAAAAATCATCCGTTTCTCTCAAGTTTATAAAAACTACTATAAAATCCGTCCAAACCCATAGCAgctgttaaagggatagttcatccaaaaataaaatacaccatgatttactcaccctatcctacagtgtatgtgtatatgactCTTTTTACATTcagagttaaattaaaaatatcctgGCTTTTCCAAACTTTATAATGGCAGTAATTGGCTGTTGAGATCCAGTAAAGTGCATCCTTCCATCATAAGAAGTACTCCACGTGGTTTGTGGGGGTAAATGCAGCGGGAGAATGGCATTTCAGCGGATGATGTGGCATTGTTTACAGTAAAGGACAACAAATCTTTAGACAATTCCTTGTTTTGTGCTAATTCATgaccattgttttattttgctcaaTTGAGGCagcactttttttggaaataggctcattctctaaCTCCCCCAGAATTAATAAGTTAATATGTACTCCCATTCCggtgtaataatcaagaaaacagatacaaaaaacaagaaatgaatTCTTATAGTTAATAGTCATATCTAATAGTTATCTAATAGTTAATAGTCATTGTTATAGTTAAGATGGGTGTGGGAAATACTTTAGTGatgtttaaagtgcccctattatgggttatgaaaggttcatattttgacTTTTGGAATCCCCAAtaacaggctgacatgcatgcaaggtcaaaaaccacttctttttctttttttataatatgcaattttttatttagatttatttgttattCATGACTcctaaatgattcatttaatgactaatttttccaaacccctccggtgattgtttgatttcatttaaagctgtgtttttgAGCTAGTGGCAGTGAATGAATTTACCTTTTCATTCAGACTGCTAAAAAAACCAACATGGGCATGGGATGGCAATGTGATCATTTGTAATTTGACATCAACACGAAGCGGCTTGGGGCTCGTTTtgaaaacgactcgtttcagtgattcaatGACTCTATCTTTTGAGAGGCAATAActcaataactttatacacggtgcactttcagatttaaaactttgtaggatgttttcattcacttagagctgtgttacacactgcattaaaCTTCCTAAAAAAGGGTTTCAAAAGGCAGCTAAAGTGACACAATAAATTTAATTACCAAT

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51871 lncRNA upstream 71075 10945056 ~ 11019192 (+) True G35229
TU51838 lncRNA upstream 251900 10838012 ~ 10838367 (+) True G35202
TU51833 lncRNA upstream 273966 10813457 ~ 10816301 (+) True G35197
TU51689 lncRNA upstream 542642 10547221 ~ 10547625 (+) True G35081
TU51632 lncRNA upstream 756459 10333219 ~ 10333808 (+) True G35043
TU51912 lncRNA downstream 37715 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA downstream 37715 11137052 ~ 11147242 (+) True LOC122346180
TU51930 lncRNA downstream 87917 11187254 ~ 11187694 (+) True G35267
TU51941 lncRNA downstream 105163 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA downstream 106979 11206316 ~ 11208454 (+) True G35274
XM_043240115.1 mRNA upstream 111 11073948 ~ 11090156 (+) False LOC122345703
XM_043240722.1 mRNA upstream 25821 11046479 ~ 11064446 (+) True map7d2a
XM_043240723.1 mRNA upstream 25821 11046479 ~ 11064446 (+) False map7d2a
XM_043240719.1 mRNA upstream 25821 11046480 ~ 11064446 (+) False map7d2a
XM_043240721.1 mRNA upstream 25821 11046480 ~ 11064446 (+) False map7d2a
XM_043239718.1 mRNA downstream 10444 11109781 ~ 11124349 (+) False LOC122345519
XM_043239723.1 mRNA downstream 10444 11109781 ~ 11124349 (+) False LOC122345519
XM_043239720.1 mRNA downstream 15425 11114762 ~ 11124349 (+) True LOC122345519
XM_043239721.1 mRNA downstream 15635 11114972 ~ 11124349 (+) False LOC122345519
XM_043239719.1 mRNA downstream 15663 11115000 ~ 11124349 (+) False LOC122345519
XR_006251083.1 other upstream 27953 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 157104 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 359215 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 972141 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1290909 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 824891 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1149801 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 1149801 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1414739 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1604034 12703371 ~ 12705241 (+) False iscu

Expression Profile