RNA id: XM_043240128.1


Basic Information

Item Value
RNA id XM_043240128.1
length 2809
RNA type mRNA
GC content 0.46
exon number 3
gene id orai2
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21961430 ~ 21967136 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAGTCATCGCAGAGACGGCTCTCGGTTCAGTAAACCGGCGACTCGAGAACCGCACAGACCGATTCGCGAACGAACAGTTCAGCTCGTGAACCTGCTTTGTTCAACCGACGCGTGATAAAGATCCGACTCAAAAGAACGATTCGCCGAGGAATCGGACGTCTCCGAGCGGAAAAGCGATTCGAGCTTGGGCTGTCAACGTCCATTTCTCTCCCGGATCCCGTCGGCTCTCATGTGGACGTGAACACAGCGAGGGATTGGCAGCAAAGTTACTATGAGCAGTGAGCTCAGCGTGCCAATGGGCTCCCCCGCTCCCGGGGGCTCGGAGCGGGTGCAGGATGGCGGTGGGATGGACTACAGGGATTGGGTTCGGCGCAGCTATCTGGAGCTGGTCACCTCTAACCACCACTCGGTCCAGGCTCTGTCGTGGAGGAAACTCTACCTCAGCAGGGCCAAGCTCAAAGCCTCCAGCCGAACCTCAGCCCTGCTGTCTGGCTTTGCCATGGTGGCCATGGTGGAGGTGCAGCTGGAGATGCAGTACAACTACCCCCGGGTGCTGCTCATCGCCTTCAGTGTGTGTACTACAGTGCTGGTGGCCGTGCACCTGTTCGCCCTGCTCATCAGCACCTGCATCCTGCCCAACGTGGAAGCCGTCAGCAACATCCACAATCTCAACTCCGTCTCCGAGTCTCCCCACGAGAGGATGCATCACTATATTGAGCTGGCCTGGGGCTTTTCCACCGCTCTGGGGATCCTTCTGTTCCTGGCTGAGGTGGTGCTCCTCTGCTGGATAAAGTTCTTGCCGGTTGACTCGGGGGAGCTCAAACAGAACTGCAGCTCTTCCGCCAGTAAGCCCAGCCACAGCGGCTGGCAGGCGGCTCTGGCCTCCACCATCATCATGGTGCCAGTTGGATTGATCTTTGTGGTGTTCACCATTCACTTCTACCGCTCCCTAGTGCGCCACAAAACAGAGCGGCACCATCAGGAGATCGAGGAACTGCACAAAATCAAGGTGCAGCTGGACGGCCATGAGCGAGGCCTGCAGGCGGTGTGAGATCCGGGGATGCTCTGAGCTTCGCGCAGTGTTTCATCGCTTGACTCTTCAAGCTTACAAGCACATTAAAACTCCTCCTTGAGTCTTTCGGGcttcttttcagttttcttcTGAGAGGAAATGTTTTGTTACCTGGTGGGAGGATTGCTTGTGTAGAAACGGAGAAAGATTTACAGCATAAAGGCGCACGTTTACAAGATGTCTACCACAAGGgctatttatttagtatttcttTCAGCTGTAGGTCATTTAGACTTTGTGTTAAGTgccattttctgttttcatgcCTCTAAAAATGCATATCACAGAGCGGTTTGCTTTTAATATCCTTTgccttttctcttccttttgcAGTGCCATACTGAATCGGTAGTGTGCCACAGATAATGAGACCAAAGGAGTTGGTCTTGGATCCATTATGGATCAGAGCTGCCAGAGTCACTGCCAGAGTATCTTTTAACTGCAATATCCAGCTTTTATAATGTACATGCCTGTTTGAGCTTCAGTTTAAAGCGATAGCTCaatgaaaaatgaacattgCAATGATTAAtcgccctcatgttgtttcaaacctctACGGCTTTCTTTTGCACAAAAGAAGACTCTTTAAACCGATTTTGTCCATACTGAGAAGGTCCGTGGTTTAAAACAACACCGATCTTTGTTGTCATTCACTTATGACGTATAAGAAGGTGATGACGcttgggtgagtaaatgaccgAATGTTCATTTctctttaagaaaacaaaaaccacaaaaaaaaggtGATGCACCCCACGTATAGTTTGTCTGTGTTAGTAGTGGATCTATAATACTGTAATCTTCTAGCCTGCAGAGTTCTCATCCCAAACAAGGATTCATCTTAAATCTGTTACAGAAGTATCGCTCGTACTAGGCCTATATGTAGTGCAGTATTTTTAGCTTGGGTGTGAAATCTAGACGCTTTAGCCAGACTCACTGCGCGCTTGTATTTCATTGAAGGTTTTGCATGTGTGTTATAATGCACTTGTCAAGCACAGAGGTGGGGGTTTTCTCCATATTTCACACAAGGCCTATTGAATGTTATTCCTGTGGGCTACTAGAAGTTTCCATTGTCGTTGTCAATAACCAGGGTCAATGATGGTTTGCGCCAATAAATGACTTGGGCACAGTTAGTTATACAAATACTTGAGAAAGACAAACTGTTTAATGTGAACCAAGTTGGCAGTTCTATCGTCAAAGCTCAAAAATAAAGTCTGATATTGAAGACTATTGGAGGGAAACATTCCAGGGGGAAAAGAAGTCGGACCAATTTCTGCCTGccttaaataattaaactgacAAAAGTGCACTTGTAGTATAGTCCATGGAAATGAGCTGTCTGTCTGCTGTTGGTCATTCAAAACACAATTATGGTTTGCTGCTTCATTTCATGCCTTAAGCATTAATTTAATAGAGTCAGTTCTGTAACAAGGCATATTGAAGCTCAGACAAGTGAACTTGACCAAAATTGTGTGTACTCTGCTTGTGGGggctttaaaatgcacttttcttttcGTGTGTGTGGAAAAATAACGTTAATGTCATTTCTGACGGTCCTGTTGCATTGTGCCACACTATCAATAGATAAACGCATATCtagtgtgaaatgtttttacgtCTAGAACATGTAGCCGACtattattgaaatgttttgttgagcATGTCTTTTCACACTCTGTCTGTACCTGTATGTTAACTTATGTCAAATAAACACAACCCTATTTTGTTTACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56992 lncRNA downstream 84845 21867615 ~ 21876585 (-) True G38523
TU56990 lncRNA downstream 93969 21867128 ~ 21867461 (-) True G38521
XR_006250963.1 lncRNA downstream 121330 21836313 ~ 21840100 (-) True LOC122345027
TU57036 lncRNA upstream 41750 22008886 ~ 22010107 (-) True G38543
XR_006250931.1 lncRNA upstream 71224 22038360 ~ 22041267 (-) False LOC122344815
XR_006250930.1 lncRNA upstream 71224 22038360 ~ 22041263 (-) True LOC122344815
TU57040 lncRNA upstream 71244 22038380 ~ 22041219 (-) False LOC122344815
TU57041 lncRNA upstream 71244 22038380 ~ 22041219 (-) False LOC122344815
XM_043239243.1 mRNA downstream 8404 21925498 ~ 21953026 (-) False ap2b1
XM_043239242.1 mRNA downstream 8404 21925498 ~ 21953026 (-) True ap2b1
XM_043238440.1 mRNA downstream 39357 21909774 ~ 21922073 (-) True LOC122344852
XM_043238785.1 mRNA downstream 65351 21886007 ~ 21896079 (-) True hnrnpul1l
XM_043238786.1 mRNA downstream 65402 21886007 ~ 21896028 (-) False hnrnpul1l
XM_043239120.1 mRNA upstream 851 21967987 ~ 21984219 (-) False bckdk
XM_043239119.1 mRNA upstream 851 21967987 ~ 21984217 (-) True bckdk
XM_043240539.1 mRNA upstream 22809 21989945 ~ 21997417 (-) False lrwd1
XM_043240540.1 mRNA upstream 22809 21989945 ~ 21997417 (-) True lrwd1
XM_043240541.1 mRNA upstream 30500 21997636 ~ 21999412 (-) True alkbh4
XR_006251116.1 other downstream 1546 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 77408 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 77408 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 135325 21809013 ~ 21826105 (-) False akap10
TU56743 other downstream 341847 21612688 ~ 21619583 (-) True G38355
XR_006251119.1 other upstream 72765 22039901 ~ 22040034 (-) True LOC122346224
TU57575 other upstream 1635108 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 1784744 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 1920167 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 2230569 24197705 ~ 24200496 (-) True G39113

Expression Profile