RNA id: XM_043240132.1


Basic Information

Item Value
RNA id XM_043240132.1
length 3869
RNA type mRNA
GC content 0.41
exon number 8
gene id doc2b
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 22045299 ~ 22116025 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCCCGGTAACAGTCTTAGCGTGCTGTAGTGGTCTGAGCACAGCTCACAGGCAGAAGGCATGACCACAGTGTGCTGGAGCAGCCCACATCCTCTCATGTAGCCCACCGCAGCGATCGCAAACTCACGCACACATGCACTTACACACCAAGACAAGCTCAGTTGCTCTTCAGGGACACTAAGAGATTACCAGAGCTAAGAAGATTTGACTTTtgaggcttgtttttttttttttttttttaattttctttactacattttttttttttttttttttttggttttgttttgttttttactgttaCCACCCACCCTTTGCTGGGTTCAGGGGTGGTGGCACATCCTCAAAAGGGCTGCATGAATGACACAACGCAAAGGCGAGAAGACGACCATCAGCATCCAGGAGCACATGGCCATTGATGTATGTCCAGGTCCCATTCAGCCCATCAAGCAGATATCTGACTATTTCCCCCGTTACCCGCGGGGTCTCCCCCCCACAGCTCCCCCGGCCCTCAGCCGCGCCGGCTCCCTGCGGAGCACCTCTACCAGCCAGAAATCGGAGGGCCCGGCCGCGGACCCCAAACGGGATGAGGACGACCTGGACCAAGCCTTCGGCGCCACCGCACTCGTGGCCAGCAAGAAAGAGGAAGAGCCGGACGTGGAAGGATATGATTCGGACGACTCCAGGACTCAAACCAATGGATCACAATGGGCTGTCAGATCCCTATGTTAAGCTGCACCTGCTGCCTGGAGCTAGTAAGGCCAATAAGCTCCGCACAAAGACCCTACGCAACACCCTCCACCCCGTCTGGAGCGAGACCCTAACGTATTATGGGATAACTGATGAAGATATGGTTCGCAAAACACTCAGGATTTCAGTGTGTGACGAGGACAAATTCCGCCACAACGAATTCATTGGTGAAACCCGAATCCCCTTGAAGAAACTCAAACCCAACCAGACTAAGAACTTCAGCAACTGTTTGGAAAAGCAACTTCCTATCGACAAGACAGATGACAAGTCTCTGGAGGAGCGAGGGCGCATCATGATCTCTCTGAAGTACAGCTCTCAGAAGTGTGGCTTAGTTGTGGGCATCATCCGCTGTGCTCATCTCGCTGCCATGGATGCCAATGGCTTCTCTGACCCCTATGTTAAAACGTATCTCAAGCCAGATGAGAACAAAAAATCAAAGCACAAGACAGCTGTCAAAAAGAAGACCCTCAACCCTGAATTCAATGAGGAGTTTTTCTATGAGATCAAGTACGCTGACCTCAGCAAAAAGACCCTGGAGGTGACCGTTTGGGACTATGACATTGGCAAATCCAATGATTTCATTGGTGGAGTCTCTTTAGGTATAAATGCCAATGGCGAGAGGCTAAAACACTGGTTTGACTGTCTGAAAAACAAGGACAAGAAAATCGAGCGCTGGCACACGTTAACCAATGAACTCCCCGGTTCAGGATACAACGAATGAAGAGGCTCTCTTTCCGGTGGATACCCCGATGCCCGCCCCTTTCCTCCATGATGTCCATGTAAAGCCCAGCAGCCTGTGATGGATGGATCAACACTCCAACAGTTCACTGATTTAGAGATGGGTGCCAGTATCTGTTCCCACATAACACACCTGCTCTATCTCTTGTACTTTTTCTGGTGTTGAGCTTGCAGTCTGATTGTGTGGCTTGATGTGGCTTTTGGGCTTATATAAGGGTCTTTAATCAGCCTGTGCTTGTACAACCTCACTGAAAATGGAGAGATGTTGTTCCGACAGCCAACAAGAGATCAGTTcctgttttcaaatatttacccACACTGCTCTCTTTCACCGATCTCTTGAGGTTTTATGTGTATTCAAGAATCCTGTTTACAGAAATTAGCTGTCAGTAAATGTATTGTTACGCGTGTGCATCATGGCAGCAAAGGGGCtctataaaataaacttttcaaaacaatattgtttaCAGTCCAAAACCTTTCTTAAGGCCAGGGTATAAACTACACAATTGTATTTTACAGACAGATGATTGTGAAGATTATATCGGTTAAAGAATATAAACTCCCAACAAATTTGTTACCTGCCCATTCTCCTAGTTTGTCTACTTAATGaatgtaatttactttttagtttCAGTAATCCCACTGAGAATGAACATCGACATTAAGACAGCACACAGCAGAGTTTCAATAGCCATTTTTCTAGAGAGAAAACAGTTTAcgtgagaacacacacaaatgctgaAAATGCTCTATTCTAGAAATGAATAGTAGGGATtgattacagattttttttaattaaatactgtGCCCAAGCCAAATTCATATACTGCATTAACATCTTTTActctaggaaaaaaaaaaaaaagaaagaaaaaaatgtgtctgtAAATCCAAAAAAACATTGGACTGGACAAACTATTGTTTTGAGATTTATTAATAGCATGTTTATCTTATTCTTCCTTTGAGCATTTTAAAGattgctaaatatatttttttaaatactatgtaatttaacttgtttattttaattttgtggcattaaattataactagattattattttacctttaTGTGTTATTACATATTTAGCATGCCGCCTGTGGGTATCTTAGATATTATTACCGTatatttaagttgttttttttttccccctcattaagagattttatttattaaggtaAACTCTAGATAAGACTTCAGATTTATTAAACACCGAAATTCCAAGCAGAACTGTCTACAGCCCTACCATGTATGTTCACCAACTGAGAAACCTTCTCTCTATGACAGTTCATTGTGCAAGCCACTCCTGTGACATTTTTGTAATCTTTTTGCTTTTGTACACAAACTCTGtggcataaaaatgcatgcaatgttCTTGGGCtgtcattaaaataactttgcTTAATGTTTGATACTGCTGTTCTCCTCTGTAAAAAGAGTTCTTGCTCTTGGATGCTAAAGGAATGTCAGCCTTCCTTCTCGGACcgtttttgtacttttgaacGCTATCGCATTGCCCGTCAGTTAGCTCTATTGACTGGACATGTGACTgcatgttacaaaaaaaaataaatcttgtcttgttttgatcattttaactcTCAGGCAATTGTTTGCATATTATAGTGGTTCTCTGATGAAGTCGATATATTTCTTCTCCTGGTTCACCTTAATCTTGCATCGAATGGCCGAATTATCGTGCCTTTTCTTTTGTAACAGTGTGTTTTTGCACCACTCACTTTACAGAGATTGAAATTAGCTTTTAATATGGAAACGATACATATGGCATAGTTATATTCTCGTCTGTGTTATGCTGTTAAAACATTGTCTCTTTGAATATGCCTCTTAAAGACACATCATGGGTGTCCTTTCACTGTGTGGCATGGGTGCGAGGCTGAGAGGCTGAGGTGGAGGACGCTTGTATAACTTCAGATTCTGGCATCTGGTAGTGTTAAACATTCAGACTGAAAAAATAAACCTACTCTGTTTTTCTGCCTCACTCACTGTACATCTTAAATTGCTTGTGCgttctttgttcatttaaatgtttatttaaaccaCATTGTAAGACCTTTAACACGTTGTGTTTTGTTCttcatgttcatttttgtgCACATCATGTTTATATTGTCAAAAGTCACCTGAAGTGAAAATATCACATATAGTGAACCACTGAAAGCATTAAGGgtttaattatgtcattatcAAGTGCTGTCAGACACCAGAATCTGttgtttactttcatttttgtcTCATTTCGAAACTGTTCAAGTATTATATCTAGAGTGTGTTTTTTACTATGGCGAATGATATTTGCAATCTACATGTTCAGAACTGGAAACCCATATCaaataaagtagaaaaataaaatgagttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250931.1 lncRNA downstream 4032 22038360 ~ 22041267 (-) False LOC122344815
XR_006250930.1 lncRNA downstream 4036 22038360 ~ 22041263 (-) True LOC122344815
TU57040 lncRNA downstream 4080 22038380 ~ 22041219 (-) False LOC122344815
TU57041 lncRNA downstream 4080 22038380 ~ 22041219 (-) False LOC122344815
TU57036 lncRNA downstream 35192 22008886 ~ 22010107 (-) True G38543
TU57176 lncRNA upstream 675665 22791690 ~ 22793053 (-) True G38634
TU57175 lncRNA upstream 675685 22791710 ~ 22793053 (-) False G38634
TU57216 lncRNA upstream 757946 22873971 ~ 22876437 (-) True G38658
TU57350 lncRNA upstream 920432 23036457 ~ 23037470 (-) True G38747
TU57383 lncRNA upstream 1011194 23127219 ~ 23131999 (-) False nrgna
XM_043238390.1 mRNA downstream 8985 22020667 ~ 22036314 (-) True castor2
XM_043240544.1 mRNA downstream 43684 21999494 ~ 22001615 (-) True polr2j
XM_043240541.1 mRNA downstream 45887 21997636 ~ 21999412 (-) True alkbh4
XM_043240542.1 mRNA downstream 45915 21997636 ~ 21999384 (-) False alkbh4
XM_043240539.1 mRNA downstream 47882 21989945 ~ 21997417 (-) False lrwd1
XM_043240133.1 mRNA upstream 21814 22137839 ~ 22211535 (-) True LOC122345718
XM_043240728.1 mRNA upstream 99314 22215339 ~ 22227188 (-) True tmem248
XM_043240726.1 mRNA upstream 114855 22230880 ~ 22240821 (-) False lig3
XM_043240725.1 mRNA upstream 114855 22230880 ~ 22240803 (-) True lig3
XM_043240650.1 mRNA upstream 191163 22307188 ~ 22555178 (-) True tmem132e
XR_006251119.1 other downstream 5265 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 85415 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 161277 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 161277 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 219194 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 1486219 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 1635855 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 1771278 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 2081680 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 2472003 24588028 ~ 24594116 (-) False anapc2

Expression Profile