RNA id: XM_043240146.1


Basic Information

Item Value
RNA id XM_043240146.1
length 3288
RNA type mRNA
GC content 0.43
exon number 11
gene id fam172a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18385973 ~ 18534507 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACTGGTTGGGGTCCATGCAGGGGATCTTTTACTGTGTTTACACGCTCCGATCATGTTGCTAACTGCAGATCGCTGCTTTCACTGTGCTTCTCGAAACGCAGACGCCGGGGTTCAGGGTGACATGCAGTAATACTTCTATAGTGGTGTGTCCATGCCTGTCAGAGCCAgcatcttcttcctcttctgttTAGTTTGGATAACTATGGCCCAGCTCTTGGcgcaagaagaaaaagaaaaaactactGCACTGAAAGATTTGCTCTCCAGGATAGATTTAGACGAGCTGATGAAAAAAGACGAACCTCCGCTGAACTTTCCTGAAACTCTGGACGAGTTTGAATATGCCTTCAATGAGAaTGGTCAGttgagacacacacaaacaggggaGCCATTTGTCTTCAACTATAAAGAGGACCTGCATAGATGGAACCAGAAAAGATATGAAGCGCTGGGAGAGATCATTACAAAGTATGTTTATGAACGCTTGGAGAACGACTGCAACCTGAAGAAGGAGATCCTTCCCGTTGATGCAACTGAGGATGAACCGAAAAGCTTTATTTACATGAGCGAGGATGCCCTCACTAACCCACAGAAGATCATGGTTCTCATCCAGGGCAGTGGTGTGGTCAGGGCAGGCCAGTGGGCTCGACGCCTCATCATTAATGAAGACCTCAACAGTGGGACGCAGATACCCTTCATTAACCGTGCCAAAGAgGAGGGCTATGGGGTGATTGTGCTGAACCCCAACGAGAACTCTCTGGAGGTGGAGAAGGTTCCGGATCCAGCCAAGAAACCGTCCCCGGATGCCTCTGATGAGCCGgctgaaaagagagagaggaaggaagagCGGGAGAACAAGAAAAAGAAGGACTTTTATGAGAAGTATCGCAACCCACAGAAGGAAAAAGAGATGGAGCACGTCCCGATACGAGAAAACAGCACTCCTGAGGAGCACACACTCTATGTGTGGGACCACTTCATCTCTAAATCACTTGCGAAAAACATCTTCATCGTGGCACACAGCTATGGCGGCTTGTCATTCGTGAATCTGATGATTCAGCGAGAAGCAGAAGTGAAGAATCATGTTCGTGCGGTGGCCATGACTGACTCTGTCCATAACGTCTGGCACCAGGAGGCCAACAAGTCCATTCGGGACTGGCTCAGAGAGCACTGCTGTAACTGGGTGTCGAGTCCTGAGCCTCTGGATACTCTAGTGGACCCCATGCTTAACGATTGCCCTCGTGTTTCAGCAGGTACGGATAAGCATGAGTTAACGTCATGGAAGAGCTTCCACTCCATCTTTAAGTTCTTCAGCGATGCCCTTAAGGACCACGAGGATGAGTCCTCCTCCAGCTCGGTCACCACACGCAGCTCCCACCGCATAAAAAACGAAGACTTATAGAGGGCTCACAGATCCCAACCCAGAGCCCACTTTTGTCCCCTATTAGttctttttctcctctgttctttttatgaaaaatattccTCCTTGAAGCCCTCCTCCCAGTGAATTGTACGACTCTGAGGAGTGCAGGGTCAGCCTGTATACATCAGAATAGCGTTTTGCATTACTTCTGGATGAGTGCAACTGTCAAAGCAATATGGCTTCACTGCTTGTGCCTCCTGTGGGCCGCTGTGTGGATTTGGTGGTGGCCCATCGGTGGCCAGATTAAGGCTGACAGGCGGCGCCGCACACCGCCTCTTGATGCACCTCTAATTATCCTGACATTGTCCTGAACTGAGCTAATGCCTGGGAagcacctgcacacacacacacacacacacacacacacacaaaagtctGGTGGGTCCTAGTGCCTGCCTTCAGTGTCTTTGTATCTCTCATTGGTTTCCCCCCgttgtttcattgtttctttcCAGTGTCTCAGTCGCATTTAAAGAACTTGTGTGCTTAGGAACTTTGTGTGTCAGATGCTAAAGGCTTACGGGTTGTTTGTTTCATTCGCACAACACTttaactggagaaaaaaaagcaacttgCAGAATCAAACATCCAATCAACGGCTATCTCCAGACTAGATTTAGAATGAACACAATGAAGTAAGCCATTGACAGCGTGGCAGATTGAATGAATCCTTCCGTTTTCAAATCTCTTAAAACCTTGTGCGAGTTTGAGTTTTGGGAATATCTCCCTTTGACAGAGCAGATATGTCAGTCTTGGAATATCTTTGTATGTGTCAGGATCAGGACGATTTGATGTTATCCAGAGTATAAAAGCCATTCCTTAAGATGTTTGCAAATGTAACCTGCCCTTTTTGCCAAGTCCGTGACTGTTTGGACTGTTTTAACACATCATTGTCATCCTCTGCTAAAGCTAAAGCATGTTATGTTTCTGTCTCAGCAAAGAGGCATTGTCTCCTGGACAATTTGGCGTTAGCGGAGGCTTAGATATGTCATTCAGGCATGTCAACAGATCACTCTGCTTTCGCTTAAAAATTGATCTCACGGTAAAAGGCTGTTTTGCCCTCATCACCTTTTAGAAGTATCATTGCTATCCCGTATTGCTGAAGGAAATCTGTCAATAGATGTAGTGTTTTATGCATATctcatctttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcaaaaacagaaatgtgacTATGGCTGACAAAATGCAAGACCCTGTTCAGagtcttttgtgtttaaactgtttttacaATGAATTAAACTTTTAACATTCCTGCAAATATTCATTAGAACGCCAACGATCAGCTGCAAGTTGCTTAATACTGTCTATTTAAAACCGTTCAACTCAGATCCCAAAATTGTTGCCTTAGGAATAAACACACAACGTCcatctttatttgattttcCAAAACCGACAAGCCATATGTGAATATTTCACTCGCGTTTAATACAGCCTTAAACCAAATCGAAAACTTAATTGATTTGTAAATAAGGActcattttaacaattaatattttaatcgaAGACGTTCTACGTTTTACTGAAACATCCCAGTCTGAAAGGATAGAAGTGTGGGgtgttttctgcctttttttatcCGCTTTGGAGGGTTCATTAAATGAAGACGTGATCAGATATTTTATCTTTGATTTCACTTATCATAAATCGTTTGAATATGTTAGTCTTTCGTCTTTGAATTAATGGCGGTTTGTGCCCTGATTAATCGTCCGGTTTGTTTTCATATCATGCGAGTGTAATAACGATCTCCATGctgtaattaaataaagttctttatttacaaaaacaaa

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55428 lncRNA downstream 12723 18372208 ~ 18373250 (-) True G37570
TU55427 lncRNA downstream 15156 18370523 ~ 18370817 (-) True G37569
TU55419 lncRNA downstream 20506 18362413 ~ 18365467 (-) True G37565
TU55417 lncRNA downstream 24812 18353591 ~ 18361161 (-) False LOC122345727
TU55526 lncRNA upstream 279348 18813564 ~ 18813771 (-) True G37637
TU55695 lncRNA upstream 534698 19068914 ~ 19075774 (-) False G37757
TU55692 lncRNA upstream 536286 19070502 ~ 19075774 (-) True G37757
TU55715 lncRNA upstream 588809 19123025 ~ 19123308 (-) True G37774
TU55717 lncRNA upstream 598597 19132813 ~ 19133144 (-) True G37776
XM_043240295.1 mRNA downstream 339586 18043514 ~ 18046387 (-) True LOC122345814
XM_043238311.1 mRNA downstream 343911 18037587 ~ 18042062 (-) True LOC122344755
XM_043240294.1 mRNA downstream 351001 18027221 ~ 18034972 (-) True arrdc3a
XM_043240157.1 mRNA downstream 481638 17899764 ~ 17904335 (-) True lysmd3
XM_043240158.1 mRNA downstream 490040 17893508 ~ 17895933 (-) True mblac2
XM_043240810.1 mRNA upstream 1389 18535605 ~ 18648678 (-) False kiaa0825
XM_043240811.1 mRNA upstream 1389 18535605 ~ 18648678 (-) False kiaa0825
XM_043240809.1 mRNA upstream 1389 18535605 ~ 18648678 (-) True kiaa0825
XM_043240778.1 mRNA upstream 144492 18678708 ~ 18805862 (-) True mctp1a
XM_043240783.1 mRNA upstream 144492 18678708 ~ 18805708 (-) False mctp1a
TU54999 other downstream 1672806 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 1672806 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 1752852 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 2007478 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 2129234 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 1333170 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 1333170 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 1334598 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 1517443 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 1591373 20125589 ~ 20127390 (-) True G38140

Expression Profile