RNA id: XM_043240157.1


Basic Information

Item Value
RNA id XM_043240157.1
length 1698
RNA type mRNA
GC content 0.43
exon number 3
gene id lysmd3
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17899764 ~ 17904335 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGTGTATGATGTCAGCGCGTGCTCACGCTGTCTGTGTTGTTGACGTGGCTTCTGGGTCTGTCTCCAGTAATCCAGCAGCTGAAGTAATGAGGCTCATAGCGGAAACTGGAGAATGCCATAATCACTAAAGTCAAGGGGACCACGTTCGTTTCTCAGtgaaaaatgaCTGGAAGGAACCAGCACAATGGTTTTCAGTTTGCAACCACAGTGCAACCACCCACAGGAGGTTACATATCTGCTTTTGGAAATAACTCAGAGACTGACTACTCAGAGGAGGATGGAGAGACCTTTGAGCTGCGTTCCAGAGGCAGGGAAAGGCATCGCAGAAGCACATCTACAGATCGCAAGGACGATATTGTCTACTTGATACGGGACATAAAAGAGGGAGATACGCTGATCAGTATTTCTCTGCAATATTTCTGTACTGTTGCAGACATAAAGCGAGCCAACAATCTACTAACTGAGCAGGACTTCTTTGCGCTGCGTTCCATAAGAATCCCTGTGAGAAAGTTCAGCTCATTCACAGAAACTCACAACACCGCTCCCCACAAAAGCAGCTCACCCGGCGACACGCGTAGAATCTCAGAGATCCCAATTTCCGGACCTTCTTTAGATTCCTCGTCCTCTTCTTCGTCTGTGGACAGCGTGGAGTGCTTCCTGCAGGAGAAGGACAAAGACATTCAGCTTCTTGTCAAATCATCTGCTCCTTCCAGGAGCAGTCTGAGCGAGGTTGTGTCCTCGCTGGAGCAACCGCTTTTGGGAGACCCCGAGCGTAGACCAGCCCAAAAGAAAGACCCATACTACGGTGCTGACTGGGGAATGAGATGGTGGACCGCAGTTGCTATCATGTTGGTGGTGGGCATAGTTACACCTGTTTTTTACTTGTTGTACTATGAAGTTTTAATGAAAGCGGATGTTAGCCACCATACTACCATTGACTCCATTAGGCCTGGACCAACACAGGCAGCTGCTGCTGAGCCTCATGGGTTACTACGGACCAGTGCTGCCTCTCATCTACATCCTGCTcctaaacaacaacattttgtgACGCATGAAGAGGAGACATAAAGGGGCACTTAAATCACCAGGGAATTGATTTGGAGGCATTAATGAAAGGTATAAATGGaaccacattttaaaaatgaaatgaactaaaacacGTGAGAGGATCGAGTAATCACGAAATGATTCTAGTCCTGTCAGCATTTTTCTTTGATGCATTTTGCACAGTTGATTGCTGgttatgttgtgtgtgtgtgtcactcatGAGCCAGTGTATATCTCTGTACCTCTATTAAGCTCATAGTTTGCATCAATGGCAAACAGCTGATATATTGTTTAAGATATTTGCTGCCACTGTCTGGTTGTCAGGGAAATAAACATggtaatttattttagaaaatgtagaaTCCAGATTCAGTATTGCAAGTGATGGTTACAAAGAGTTTCtggttttaaatttttaaactttgcttgtaaaaaagaaaaacaaaacttaatggAACCGTAATGGATTCCTGTTTTTCTTCTAGCAAGAGCACAGGAGGACAATTTGTAAAATACTCGTATGTTTGATTCCATTGAAGTAGCAGAGATGTAAAAATTTCTATGAAACATGGAGTACACTGATTGACATTTGAACAGTATGTGCCTTCATCCTGTAGATGCAGGTTGAAAATAAAGGAATTCTATTTTA

Function

GO:

id name namespace
GO:0016998 cell wall macromolecule catabolic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55259 lncRNA downstream 6446 17891957 ~ 17893318 (-) True G37439
TU55247 lncRNA downstream 207619 17668259 ~ 17692145 (-) True G37427
TU55246 lncRNA downstream 213754 17646099 ~ 17686010 (-) False LOC122345155
TU55242 lncRNA downstream 214969 17646099 ~ 17684795 (-) True LOC122345155
TU55274 lncRNA upstream 42212 17946547 ~ 17946764 (-) True G37453
TU55276 lncRNA upstream 50165 17954500 ~ 17954747 (-) True G37455
TU55277 lncRNA upstream 51216 17955551 ~ 17955769 (-) True G37456
TU55279 lncRNA upstream 57508 17961843 ~ 17962070 (-) True G37458
TU55280 lncRNA upstream 59369 17963704 ~ 17963934 (-) True G37459
XM_043240158.1 mRNA downstream 3831 17893508 ~ 17895933 (-) True mblac2
XM_043238994.1 mRNA downstream 143998 17686501 ~ 17755766 (-) False mef2cb
XM_043239005.1 mRNA downstream 153243 17686501 ~ 17746521 (-) False mef2cb
XM_043239003.1 mRNA downstream 153243 17689645 ~ 17746521 (-) False mef2cb
XM_043238998.1 mRNA downstream 153245 17686501 ~ 17746519 (-) False mef2cb
XM_043240294.1 mRNA upstream 122886 18027221 ~ 18034972 (-) True arrdc3a
XM_043238311.1 mRNA upstream 133252 18037587 ~ 18042062 (-) True LOC122344755
XM_043240295.1 mRNA upstream 139179 18043514 ~ 18046387 (-) True LOC122345814
XM_043240144.1 mRNA upstream 481638 18385973 ~ 18534507 (-) True fam172a
XM_043240145.1 mRNA upstream 481638 18385973 ~ 18534386 (-) False fam172a
TU54999 other downstream 1186597 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 1186597 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 1266643 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 1521269 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 1643025 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 1963051 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 1963051 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 1964479 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 2147324 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 2221254 20125589 ~ 20127390 (-) True G38140

Expression Profile