RNA id: XM_043240164.1


Basic Information

Item Value
RNA id XM_043240164.1
length 2267
RNA type mRNA
GC content 0.47
exon number 7
gene id tbx3b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9754034 ~ 9757833 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATAAAATCGATTTACCACGCCCTGACGAAGCACAGTTGGTTTAGATGTGTCCACGGAGCCAATCAGAAACGTCTGACCCGACCCGACAACAAACCACCACGCCGTCCCGAGATCCGGCAGAAGGTCGCCAGGGTTCATCATCTGTGCGCACTAAACCCCATAAAACAACCTTCACGGTCTCTGCAGTTGGGTTCTTCACTCAACGGGACAAAGCCATGAAAGCATGAAAATGGATGAAAAAGGCGAAATGCATTTTGACAAACTGTCTGCAACTTCTGGCGCACTGAAACCAGCACGATTCCACATAAGCTGAAGGCTTCAGAGAGGAGTTATTAGCTACCTCCGCTGTGAGGATGAAGTGACTCTTGAAGATTACGTTATGAAATAACCCCACAAGCAGCGAAGTTGAGAGAATGGCGTATCGCCACTTCATGCCGGTCAGCCCTACTGACCTCGCTGTTAGTTCGATGCTTGGACAGCAGTCCCGGTTTTTTCCTGTTGGATACGGGAAGCAGCAGTTTGCGAACGCGCTCCATAACTCGGTTCGTCTGGCGCTCAAAGACGCCGCGTCTCCCGCGCACCTCTCCGTGGAGACGAGAGCACCTGAGGATGACCCCGTGGTTCACCTGGAAGGCAAGGAACTGTGGGGGCAGTTTCACAGAAGCGGCACGGAGATGGTCATAACAAAGTCTGGAAGGCGCATGTTTCCAGCTTTCAAAGTGCGCTGCAGCGGCTTGGACAGAAAGGCGAGGTACATCCTGCTGATGGATATAGTCGCGGCTGATGACTACAGATATAAGTTTCACAACTCTCGCTGGATGGTTGCTGGAAAGGCCGACCCAGAAATGCCCAAACGAATGTACATCCACCCGGACAGTCCCGCTACGGGGGAGCAGTGGATGTCCAAAGCGGTGACATTTCATAAGCTCAAACTGACGAACAACATATCTGACAAACATGGATTCACCATATTAAACTCCATGCACAAATATCAGCCGAGGTTTCATATCGTTCGAGCCAACGACGTCCTCAAACTTCCGTACAgcacgttcaaaacctacgtgtTTCCCGAGACAGAGTTTATCGCCGTGACAGCGTACCAAAACGAAAAGATAACTCAGCTGAAAATTGACAATAACCCATTTGCAAAAGGATTCAGAGATACCGGAAATGGGAGACGAGAGaaaagGAAACAGCTGTTGCATCAGAAAAGTGATGTGGCCCCGAAAAAAGCCTGTGTGTCCACAGAGGACTCATCTTTCGACCAAAGTTCATCAAATCCTTCAATTCAAGAAACAAACGTCGTTACATCCACTTCAACAGATGCGAATGAGAGCGACGTCGATGGGTACGGAGATGAGAAGGAAAGCGATGAAGATGGAAAGCATTCAGTTTCTCAAGATGAGCAAACTTCTGCAGAAATCTCAACAACGGTGCAAGAGTCCAAGGACAATTCAAAACAGGAGCTGCAAGCAAATTGGAACACATGGCTcaacaacaaagaaaagcaTAGTAAAGAGGTTACTGAACGTTTAACCTTGGATAGAAAACATGCAGAACAATGCAAGTTTGTAGATGATTTGAATGATGTTTCTCAGAAGGCTTCGCTCACTCGGCATTATTACATCCCCGCTCCCGGCCTGATTAATTCTCTGTGTGTGCCGCCGCATGTCTTGTCAAATTTATGCCAGTTTAATTACGTTGGAACACTTCCGTTTTTGGCGTCTGGAGCAACAGGTCCTTGGTTATGCAGAAGGTCAAATGAAGGGGAGGGTCAAGATTACACCGCTTCAGTACCGACCTCACAACGAAGATTTATTGGCATGCAGCAGCAAAGAACGACTTCTCAGGGTGTGCTTGGAAATTTCTTGTCTTATCCACAGAGTTACACGACCTCATCTGCCGCCACGTCCTCTGCCGCATCGTACCAGGTTCAAGGACCACCCTTTTTCAGCGCTAGCTATGGATCCCGATGCGGACCCTGCCCTTTTCCAATGTTTCTGCACGGCCGAAAAATGCCACAAACCAGAACCGATACAAATCAGCATGCTGGTATTGCGACTCctggttcaaaacctaatgaGGATCAAAACACACAGCGTCGAGATCTCTAGAGACGTCTCTACAGGAACAAGATCAGCTGTAATGATGTGCATTTAGTCGATTGTATGTATCAACCGTCtggattaaaaattaatatatgctATTTATTCTTTAGTCTTTACCTGCTGtataaaagtgtgaaaaatatttaaaatacacaaag

Function

GO: NA

KEGG:

id description
K10176 TBX2; T-box protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51125 lncRNA downstream 505993 9246920 ~ 9248041 (-) True G34704
TU50983 lncRNA downstream 693220 9013306 ~ 9060814 (-) True G34594
TU50996 lncRNA downstream 762721 8991101 ~ 8991313 (-) True G34607
TU50995 lncRNA downstream 763011 8988611 ~ 8991023 (-) True G34606
TU50967 lncRNA downstream 819895 8933911 ~ 8934139 (-) True G34583
TU51339 lncRNA upstream 6240 9764073 ~ 9764532 (-) True G34869
TU51341 lncRNA upstream 8435 9766268 ~ 9766607 (-) True G34871
TU51347 lncRNA upstream 19800 9777633 ~ 9778238 (-) True G34877
TU51619 lncRNA upstream 523576 10281409 ~ 10296141 (-) True G35035
TU51637 lncRNA upstream 579914 10337747 ~ 10341167 (-) True G35047
XM_043240507.1 mRNA downstream 1077 9750652 ~ 9752957 (-) True tm2d2
XM_043239837.1 mRNA downstream 72233 9579488 ~ 9681801 (-) True unc5db
XM_043239838.1 mRNA downstream 178227 9571202 ~ 9575807 (-) True hdr
XM_043239839.1 mRNA downstream 178229 9571202 ~ 9575805 (-) False hdr
XM_043239200.1 mRNA downstream 184740 9566515 ~ 9569294 (-) True LOC122345250
XM_043239701.1 mRNA upstream 23005 9780838 ~ 9791734 (-) False araf
XM_043239700.1 mRNA upstream 23005 9780838 ~ 9791734 (-) True araf
XM_043238424.1 mRNA upstream 34354 9792187 ~ 9796033 (-) True imp4
XM_043239067.1 mRNA upstream 40461 9798294 ~ 9808373 (-) True rabl6b
XM_043239068.1 mRNA upstream 51036 9808869 ~ 9813130 (-) True tcn2
TU51236 other downstream 351411 9337828 ~ 9402623 (-) True G34789
TU51091 other downstream 533527 9215508 ~ 9220507 (-) False vamp5
TU50964 other downstream 823981 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 1076316 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 1322459 8429700 ~ 8431575 (-) True timm8b
XR_006251099.1 other upstream 567282 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 703375 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 1110531 10868364 ~ 10874064 (-) True G35371
TU52116 other upstream 1166094 10923927 ~ 10926163 (-) True G35384
TU52323 other upstream 1662122 11419955 ~ 11467122 (-) False hmgn7

Expression Profile