RNA id: XM_043240168.1


Basic Information

Item Value
RNA id XM_043240168.1
length 2804
RNA type mRNA
GC content 0.41
exon number 11
gene id tia1l
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10762439 ~ 10768631 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGACGTCATTTGGTGACGTTTCACGAGTAACGTCAGAGGAAGTTATTCCAGTAAATTCGCGTTAACTAACAAGTTAAAATCATAGAAGCTTTACCCACTCGAACGTTAAAAACAGagcagtttttttaatcaaagcgTCAACCCTTTCCCACCAGCATGATGATGATGGACGAGGACCAGCCCAGGACATTGTATGTCGGGAACCTCTCCAGGGACGTTACGGAGGCCCTCATCCTGCAAGTGTTCTCCCAGATCGGCCCCTGCAAAAGCTGTAAAATGATATTTGATacgGCTGGAAATGACCCATACTGCTTTGTGGAGTTCTATGAGAACAGACATGCTGCTGCAGCTTTGGCTGCCATGAATGGCAGGAAGATCTTAGGAAAGgACATGAAGGTTAACTGGGCCTCAATGCCAGGCAGTCAAAAGAAAGACACAAGCAATCATTTCCATGTCTTTGTCGGTGACCTGAGCCCAGAAATCTCCACAGATGATGTCAGAGCAGCCTTTGCTCCGTTTGGAAAGATATCTGACGCCCGTGTGGTGAAGGATCTGGCCACAGGCAAATCTAAAGGATATGGTTTCAtctcttttattaataaatggGATGCAGAAAGTGCTATTCAGCAAATGAATGGCCAGTGGCTGGGAGGCAGACAGATCAGAACAAACTGGGCCACAAGGAAGCCATCGGCTCCTAAATCAAACAATGAAGCCAGCAGCAAACACTTGTCGTATGAGGAGGTCCTGAACCAGTCGAGTCCGAGTAACTGCACTGTGTATTGTGGTGGCATTGCTTCTGGCCTTTCAGATCAACTGATGAGACAGACTTTCTCTCCGTTCGGGCAGATAATGGAGATCAGGGTTTTCCCGGAGAAAGGCTACTCATTTGTGAGgTTTGATTCTCACGAGGGTGCCGCCCATGCCATAGTGTCTGTAAATGGGACTTGCATTGAGGGCCACACTGTGAAGTGTTACTGGGGCAAAGAAACGGCTGACATGAGATCCATGCAACAGATGCAAATGCCCCAGAATAAACCCACCTACGCGGCCCAGCCTTACGGACAGTGGGGTCAGTCGTATGGCAATGGTCAGCAGATGGGTCAGTATATGCCCAACGGCTGGCAGATGCCCACTTATGGTGTCTACGGGCAGGCCTGGAATCAGCAGGGATATAAATAAGTACAGATGTGGCTGACTAATTCCTTAGTCCAATCATTAAACCCCACTCCAGTGTGGCATCTGCCCAATGGGACTCACCATTACACCAGTTCAGGGGTTGTTGAAAGGGCTGCATTCAGCCCACTGTACATTATACTCAGACCATTAACTTGGAAGGAATcctgtctttttgtcttttttttgttttgtttttgtttttaggccccaggattttttttgttgtcagattttcttttaaaaagtactgCATTTCGGGGACTTTAATTGTCTAGTTTTGCAACAGATGGAATGTCTCTTCAATGTGTTGAATCTGCAGGCTCAATTTAGCTCACACCTCGAACGGTGTAGAAAGTTTGAGGTCTAATATACTGCACTCTTTGTATGGAGTTCTTGACTCGAAATCTGATTTGTTCACGAATatcttttcatatttgttttgtcaGTACGACTAcgctttacattttattttgacgagaaagaattcaaaatttgaGACGTGTGATCGCGTTATTcgaatacaaaatattttatctcGTGACGCCTAGTGATAAAGGTGTTTTGCATATATAGGGGAGATTATTCTGTGGCCTTGAGTACTTGAGGTTTCAGGAACTTCATGATAAAGTTTTGGACGATTACTAAAGCTTTTAACAAGTTGTATTAACACAGAGGTGCAGAAAACatgcttcctttttttgttcaatttaaacTTAGTCTATTCATTTTGTAACATGGAATTGTTGGCTcaatttttaaagctttttttttctttcatgtttttacaaaatcatGTTTGCTCGGATCAGTTGAGGGTGTGACAGCACAGCGGCTAATCAGCAGTAATGGCAGTGCTGTAGCATCTTTGTAAAGATTTTTGTAATTCTGTGTAAAATGAGGTtgtgaattatttctttaaatcttgTAAATTCAGGGTTTGTTGAACATCTGTAATGTAATGTTGCATGGACATTCTGAGCTCTGTTCTTGTTACAATCTCTtgtaaaatccataaaaacgtGTTCATTAGAGTTACTGAGATGCAATTTTTCTATGTTCCTCCCATAATTCTTCCCCAAGAGTCACTGTTGAATTTACAAGCCAAAgacaatgacaaaaatgaagCGAGATCTTGCATGCTTCCACCTTGCTGTATTGAGATGGTGATTGTAATGTCAGTGTTTGCTGTATTATGGAAAGGTGAAGAAATGCAAGATACTTCTGGGTTTCAGCCACACGCTCTCAAGTTGCTCACACGGCCAAAATCTTTACCAGGcactggtgttttttttttttttttcttgccatcATTTTCTCTTCTTACTGGGCCCCAACACGGAGTAATGATTCAGTAGATCAAATTTAAAGCAATGAGCAACTGtccttttttccttcttctgtgTCATGTAAATTTATCAACATAGTTATTTAAtgtatctttttcttttcttttttttctatctaacaaagttttttttttttttttttttttttttttgatttgtaaaaAGCTAGAGAAGTTTACTGTTATTTTGAAACACCCCGATTATATGCTTCCATCTAATGTTGTTCCATTTACTATATTCCATGTgtaaaaacacttaataataaCCATTCAGAACTA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51689 lncRNA upstream 214814 10547221 ~ 10547625 (+) True G35081
TU51632 lncRNA upstream 428631 10333219 ~ 10333808 (+) True G35043
TU51631 lncRNA upstream 432117 10329889 ~ 10330322 (+) True G35042
TU51630 lncRNA upstream 434978 10327031 ~ 10327461 (+) True G35041
TU51629 lncRNA upstream 435725 10325866 ~ 10326714 (+) True G35040
TU51833 lncRNA downstream 44826 10813457 ~ 10816301 (+) True G35197
TU51838 lncRNA downstream 69381 10838012 ~ 10838367 (+) True G35202
TU51871 lncRNA downstream 176425 10945056 ~ 11019192 (+) True G35229
TU51912 lncRNA downstream 368421 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA downstream 368421 11137052 ~ 11147242 (+) True LOC122346180
XM_043238726.1 mRNA upstream 8175 10749401 ~ 10754264 (+) True trmt2a
XM_043238157.1 mRNA upstream 26380 10717531 ~ 10736059 (+) True osbp2b
XM_043240586.1 mRNA upstream 61049 10690779 ~ 10701390 (+) True LOC122345984
XM_043240585.1 mRNA upstream 61049 10690892 ~ 10701390 (+) False LOC122345984
XM_043240587.1 mRNA upstream 61118 10690892 ~ 10701321 (+) False LOC122345984
XM_043240755.1 mRNA downstream 101707 10870338 ~ 10874092 (+) True znf703
XM_043238679.1 mRNA downstream 136303 10904934 ~ 10908357 (+) True si:ch211-137i24.12
XM_043239138.1 mRNA downstream 150142 10918773 ~ 10922782 (+) True phf23a
XM_043239139.1 mRNA downstream 154239 10922870 ~ 10926030 (+) True plscr3a
XM_043240924.1 mRNA downstream 158192 10926823 ~ 10933753 (+) True senp3a
TU51709 other upstream 31387 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 644313 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 963081 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1890921 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 2458288 8289720 ~ 8304151 (+) False snx19a
XR_006251113.1 other downstream 158192 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 277849 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1155597 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1480507 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 1480507 12249138 ~ 12255672 (+) False G35720

Expression Profile