RNA id: XM_043240186.1


Basic Information

Item Value
RNA id XM_043240186.1
length 4273
RNA type mRNA
GC content 0.48
exon number 25
gene id slc4a5a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9295196 ~ 9316541 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATGATTTGACTCGTTGTAGAAATACGCATTGTTTTAATTCGTTCTTATCAGTATTTAATCGTGTCTTCTGAATGATCTCAGGATGGACCATGATCGAGGCATGGGCAACAGTCGTTATCGttatgaggaggaggaggACCATCAGTCTATCTACATTGGTGTGCCAGTGCCCCGCGGTTACCGTCGGAAACGCAGGAGGAGACGTTCGTCCATGTTGAGTCGCGATACAGATGCAGAACGAAGACTCCGACACGAGCATCACAGACACGAACACTACGATTGCGATGACAGAGACCGCTACGATCTAGAGGCGGGAGGCCTGGATCAACCAGAGCTCAGTCTGCCGCCAGACATCAACAGAACCATGTCCCCAGCAGCAGAGCGACTGCGCTACATTTTGGGGGACGATGAGGAAACCATGCCCACACCCACTCTCTTCACCGAGATGGACACGCTGCAGCACGAGGGCGACGAGCTGGAGTGGAGAGAATCAGCTAGGTGGGTGAAGTTTGAGGAAAAGGTCGAGGAAGGTGGGGAGAGATGGAGCAAGCCCCACGTTTCCACGCTGTCCCTGCACAGCCTGTTTGAACTGCGGACATGCCTACAGACGGGCACCGTGCTGCTGGACCTGGAGGGCTATTCACTCCCACAGATAGTCGATGACATCATCGAACGTCAGATAGAGGAAGGGTTGATCGGTCCTGAGCTGAGAGACAAAATCAGCTTCGTCCTGTTGAGAAAGCATAGACACCAGACAAAGAAACCCATCCATCGCTCCTTTGCTGATCTGGGCAAGTCTGGCTCCGGGGGCACTCGGAGCCCAGCCCGATCCCCTGCTGCTGGAGCAAATTTTAACCGCTCAACAGAAGATCTGCGAAGCAAACAAGCAGCCAACTATGGCCGACTACgtCATGCTCAAAGCAGGAGTATGAATGACATCGCAGACACACCAAGCACAGACCAGCTGAAGAataaattcatgaaaaaaattcCTAGAGATGCAGAGGCATCAAATGTTCTTGTGGGAGAAGTGGACTTCTTAGAAAAACCCTTTGTTGCCTTCGTCCGGCTGTCTCAGGCCACCACTCTTGGAGGTCTGACAGAAGTCCCAGTGCCTACCAGATTCTTGTTTGTGCTACTTGGGCCTCCTGGCAAAGCCAAATCTTACAATGAGATTGGACGGGCCATTGCCACTCTCATGGTGGATGATCTCTTCAGTGACGTAGCATATAAAGCCAGGGACCGAGAAGATCTGATTGCTGGCATTGATGAGTTTCTGGATGAGGTGATTGTGCTTCCACCTGGAGAATGGGACCCCAAAATTCGCATagaaccccccaaaaaaattccCTCAGCGGACAAAAGGAAGTCTGTGTTTTCCCTCAATGAGCTGGGTCAGATGAATGGGACAGCAGGTGGCGGAGGGCCTGTTAGCGAGGATGAGGAAATGCCTGTTCCACACGAGCTTGGTGAAGAGTTGGCGTATACGGGGAGGTTCTGTGGCGGCCTTATACTTGACATCAAGAGGAAGCTCCCCTGGTACCCGAGTGACTTTTATGAAGGCTTCCACATTCAGTCCATCTCTGCGGTGCTCTTCATCTACCTGGGCTGCATTACCAATGCAATCACCTTTGGGGGCCTTCTAGGGGATGCCACAGACAATTACCAGGGTGTGATGGAGAGTTTTTTGGGCACCGCTCTAGCAGGAACGGTATTCTGCTTGTTTAGCGGTCAACCCCTCATTATTCTCAGCTCAACGGGCCCCATCCTCATCTTTGAGAAACTGCTTTATGAATTCAGCAAAAATAATGGGATTGATTACATGGAGCTTCGACTGTGGATCGGAATGCACTCCTGCGCACAGTGCTTGTTCCTGGTCGCAACGGACGCCAGCTACATCATAAAGTACATGACGCGCTTCACAGAGGAAGGCTTTTCTAGCCTCATTTCCTTCATCTTCATCTCTGATGCCATCAAGAAAATGGTGGGAGCCTTCAAATACTATCCCATCAACACCGACTTCAAACCAGACTACGTTACGGCCTACAAGTGCGAGTGCTTGGCGCCAGACCCGATGGCACCAATGATCTTCGATGTTGTAGTCCCAGTGCCAGATAATTCCTCTGCTCTCTTTGGTTTGAATGTAACAGCTCTTGACTGGACTCAGCTAAGTAAGAAGGAGTGTGTGAAGTACGGAGGCTCACTGGTGGGAAAATCCTGCAAGTTTGTTCCAGATCTTGCTCTCATGTCCTTCATTTTGTTCTTTGGGACCTACACTATGACCGTCACTCTAAAGAAGTTTAAATTCAGTCGCTACTTTCCCACAAAGctAAGGAAGTTGATTAGTGACTTCTCCATCTTCATGTCCATCATGACGTTTGTGGGGCTGGACATGCTAATAGGTTTGCAAACACCCAAACTCATTGTGCCTACAGACTTCAAGCCCACACGTCCTGACAGAGGTTGGTTTGTGATGCCATTCGGAAAGAATCCGTGGTGGGTTTACCTGGCCAGCTCCGTCCCGGCGCTCCTCGTCACCATCCTCATCTTCATGGATCAGCAGATCAGCGCTGTCATCGTCAACCGCAAGGAAAATAAGTTAAAGAAAGGTTGTGGGTATCACCTGGATCTGTTGTGGGTGGGCTTTCTGATGGTGGCCTGCTCGTTTTTGGGCCTGCCGTGGTATGTGGCGGCCACTGTCATTTCCATCGCTCACATCGACTCACTGAAGATGGAGAGTGAGTCTAGTGCTCCAGGGGAACAGCCACAGTTTCTAGGTGTGAGAGAACAAAGACTGACGGGAATCCTGGTCTTTGTGCTGACAGGAGTGTCTATCTTCTTGGCCCCCATCCTGCAGttcattCCTATGCCGGTCTTGTATGGAGTCTTCCTCTACATGGGTGTTGCTTCTCTTAGTGGCATCCAATTCTGGGATAGGATCAAGCTGATTATGATGCCAGCAAAACACCAGCCAGATTTTTCATACCTGCGTCACGTACCGCTGAGAAGAGTCCACCTGTTCACACTGGTGCAGATTATTTGCTTAGCTGTTCTCTGGATCCTCAAATCTACATTCCTCGCTATCATCTTCCCAGTCATGATTCTTGGTCTCATGGTGGTACGAAAGCTGTTGGACATGGTCTTCTCTCAACATGATCTGGCATGGCTGGATGATATCCTGCCTGagaaggaaaagaagaaaaaggaggaTGAAAAGAAGAACACCAAGAAGGACAAAAAGAAAGGCAAAGGAGGGGATGACACTGAAGAAGACAAGTATAACCCCTATACAAACTGCTCCCCCAGTGATGCGGACTTGGATCGCAGCATTACTCTGCACCTGAAGATCTCCTGTCCATCATCCCCGGCGATGCCAATGACCAGAGGGATGTCCTGCCCCGTGCCCCAGGTGAAGATTGAGATGGAGTCGGACTATGACGACACAGATATTAACCCTAGAGGCAGACACAGAGATCACAGGGACATGAGCAGCGAAACGACGCTATAATGTTGGTTCTCCAGTTCTGCAGTGTGGAACATTGCATGCTCCTTCTCAGCTTCTTTGAAGATCCTGTGTGGCTAATACACAAGTTTATGTTCACTTATGGATCAGACAGCACTTTATGGGTACGCATAACTGTGACGTGGCATAAGAAGTCAGAGGTTGAATTACGAAGGGCAAACATTGAGCcgaaatgcataatttatgcaATGGATGCATTGAGCAATCATTTTTGcttcttattttaaatgccaaaacagcagaaaatgCAGGCAATTGGAAACAATATAACACTGAGATAATGGGAAGGCAGAAAGACTATTTTCTTACTACAAATGAGACTATATTTTAGAcaaaatctgtttatatttaCGCAGTGCAAAGTACCTCATGAAATTTCAGTTTAGGATCCTAGATCAACTTTACATTACACCTTTTTATATTATGGTGACAGGGATAAACAATTCAGATATTGTTTTCCTCTATAACTGCTACCTCTGGTTCTAGTAGTGTTGCCTTTCTCCAAACAGTCATGCTTTTCCTTCCTTTCCCTTTCTTTTCCTGCCTACATCActcaaaaatctcaaaaagcCGGGGAAAAGAAACAACCAAAAATACAAGCCttgaaataacaaatgaaaGAGGTTTTGGCCTTACATTTGGTTTCCTTAAGTTTCAGAAATCTTATGTGACTTGTGTTCAGTGtatgtgggatttttttttctgtatatgaatgtgtgtaaaTGGAAAGGTTGCAAATGACGGATAA

Function

GO: NA

KEGG:

id description
K13857 SLC4A5, NBC4; solute carrier family 4 (sodium bicarbonate cotransporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51096 lncRNA upstream 43406 9248259 ~ 9251790 (+) True G34688
TU51097 lncRNA upstream 47183 9246910 ~ 9248013 (+) True G34689
TU50825 lncRNA upstream 293976 8993896 ~ 9001220 (+) False G34480
TU51161 lncRNA downstream 44318 9360859 ~ 9433507 (+) True G34725
TU51186 lncRNA downstream 162064 9478605 ~ 9565907 (+) True G34747
TU51300 lncRNA downstream 448595 9765136 ~ 9765347 (+) True G34840
TU51301 lncRNA downstream 449429 9765970 ~ 9766349 (+) True G34841
TU51302 lncRNA downstream 450753 9767294 ~ 9767821 (+) True G34842
XM_043240551.1 mRNA upstream 7668 9279117 ~ 9287528 (+) True zgc:110329
XM_043240637.1 mRNA upstream 171319 9107949 ~ 9123877 (+) True zgc:162952
XM_043240638.1 mRNA upstream 171319 9107950 ~ 9123877 (+) False zgc:162952
XM_043238680.1 mRNA upstream 187992 9105500 ~ 9107204 (+) True b3galt8
XM_043240197.1 mRNA upstream 190330 9072781 ~ 9104866 (+) False tncb
XM_043240179.1 mRNA downstream 2956 9319497 ~ 9323538 (+) True zgc:113436
XM_043238253.1 mRNA downstream 7679 9324220 ~ 9329844 (+) True abcb9
XM_043240257.1 mRNA downstream 13792 9330333 ~ 9340363 (+) True vps37ba
XM_043240253.1 mRNA downstream 24924 9341465 ~ 9371922 (+) True ppp3cca
XM_043240255.1 mRNA downstream 24926 9341467 ~ 9371922 (+) False ppp3cca
TU50789 other upstream 423678 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 991045 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 1284597 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 1497228 7754074 ~ 7797968 (+) True p2rx1
XR_006251015.1 other upstream 1728620 7558940 ~ 7566576 (+) False svopb
TU51316 other downstream 479849 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU51450 other downstream 747676 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 1412577 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 1610282 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 1729939 11046480 ~ 11062314 (+) False map7d2a

Expression Profile