RNA id: XM_043240198.1


Basic Information

Item Value
RNA id XM_043240198.1
length 6545
RNA type mRNA
GC content 0.49
exon number 21
gene id tncb
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9072780 ~ 9104866 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGACCGCAAAGTGTctactgtttaaaagaaagggacttctccctccctctctctctcactctctccctctctctctctctttcactcattCCCTCTCTCAGCATCAGCAGACATACACTGGCTGGATGGAGCACTCTCACTGAGAGCAGAGAGACAGGAGGAAATGACAGGACTGTCATCTGtctaaagaaaattaaaaagcacttcAAGAGTTCCTGATGTTTTTAACCTCCGTTTGGCAACACGTCGCAGTTCCCTAGACGGAGGCACGTCTCTGAGCTTGTAGAGGAGGATTGGTCTCACTAAGGATCAAATCCAAATCTTTGGTAtcttaaaacagtttaaacaaTCACGCCAGTAAGAAGAGGCAAGGAGCAAATCATCATGGGGATGCGAGGCCTGCTTCTGGCCTGTGTGGCAGTAGCCATGTTAGTTCATCTCTCTAGTGCTGGCCTGGTGAAAAGAGTAATTAGACACAGAAGAGAATCACTGTCACCGACCACTGAGAACTTGACCCTCCCAAGTCCTGATCAGCCTGTGGTTTTTAACCATGTATACAACATCAACGTTCCCTCTGGCTCCCTGTGCTCTGTGGACTTGGATTCACCTGGAACAACACCAGTGAAGCCAAAACCGGCCAATCTTCAGTCTGACCAGCACATAGAACACACCACGGATGGAGAGAATCAGATTGTTTTTACGCATAGGATTAACATTCCCAAGCAAGCTTGCGGTTGTGATAACCACATGCCTGACCTGAAGGATCTTCTGAACAGGCTGGAAATGCTGGAGGCGGAGGTATCCAGTCTAAGAGAGCAGTGCACCAGTGGAACAGGCTGTTGTAGTGCTCAGGTGTCAGGTGAAGTCACAACCAAACCCTACTGCAGTGGCCGCGGAAACTACAGCACCGACACCTGCAGCTGTGTGTGCGAGCCCGGTTGGAAGGGAGTCAACTGCTCTGAGCCAGAATGCCCCAACTTTTGCCAAGATCAAGGCCGCTGTGAAGATGGCAAGTGCGTCTGCTTCGAGGGCTTCGGCGGTGAGGACTGCAGCGTCGAGCTGTGCCCAGTGGATTGCGGTGAGAATGGAGAGTGCATCGACGGGGCTTGCATCTGCGCTGAGGGCTTCATCGGTGAGGATTGCAGTATGACCAACTGCCTGAACAACTGCCTGGGCAGGGGGCGCTGTGTGGATgacgaatgtgtgtgtgatgagccTTGGACAGGCTTTGACTGCTCCGAGCTCATCTGTCCCAATGACTGCTACGACCGTGGCCGCTGTGACAATGGAACCTGCTATTGTGAAGAGGGCTTTACTGGGGAGGACTGCGGGGAGCTTACCTGCCCCAAAAACTGCAATCACCGTGGCAGGTGCGTCAATGGACAGTGCGTCTGCAACATTGGCTACAGCGGAGATGACTGCTCCAAGCTAACCTGCCTCAATGACTGCAATCAGAGAGGGCACTGCTTCAATGGGAAGTGCATATGCGATCCTGGGTTTGAGGGTGAGGACTGCGGCATTCTTTCCTGCCCTGACAACTGCAATGATAGGGGACAGTGTGTCAATGGTGAGTGTATTTGCGATGATGGATATGAAGGTGATGACTGCTCCGAGCTCTCTTGCCCCAATAACTGTCACGATCGGGGCCGATGCGTCAACGGGAAGTGCATTTGCAAAGTAGGCTTTGCTGGAGAAGATTGCAGCATTAAGACCTGTCCCCATGACTGCCATGGACGCGGAGAGTGTGTTGACGGCAAATGCGTTTGCCATGATGGCTTTGCTGGAGAACACTGTGGCATCAAGACCTGCCCCCATCATTGCCATGGACGGGGACAGTGTGTGGACGGCAAGTGTGTTTGCCACCATGGCTTTGCCGGAGAAGATTGCAGCATCAAGACCTGTCCCAGTCACTGCCATGGACATGGACAGTGTGTGGATGGCAAGTGCATTTGCCACCATGGCTTTACTGGAGACGATTGCAGCATCAAAACCTGTCCCAATGACTGTCATGGGCGTGGAAAGTGCGTGGACGGCAAGTGCATTTGCCATGATGGTTTTGCTGGAGAAGACTGCAGCATCAAAACCTGTCCCAATAATTGTCATGACCGTGGACAGTGTGTGGACGGCAAGTGCGTTTGTCATGCTGGCTTTACAGGCCATGACTGTAGTGAGTTGACTTGCCCCAATGACTGCCATAACCGAGGACTTTGTGTAAATGGCCAATGTGTGTGTAACATCGGGTTCTCTGGGGAGGACTGTAGTACAAAGACATGTCCCAACAACTGCCTGGACCGTGGCTACTGTGAAGATGGAAAGTGTGTCTGCTCTGAGGGCTACACCGGTGAGGACTGCTCTGTTTTGACCTGCCCAGCAAACTGCAATGACCAAGGCCAATGTCTGAATGGAATGTGCATATGTGATTTAGGCTTCACTGGCGACGACTGCTCTGAAATCTCCCCACCCAGAGACTTGACTGTGACTGAGGTCGATCCAGAAACGGTGGACGTTGCCTGGGTCAATGAGATGCTTGTGACGGAGTATCTTATCACTTATGTGCCTACGGCTCCTGGCGGTTTGGAGATGGAAATGAGAGTTACTGGTGAAAAGAAGATGGCCACTATTAGGGAGCTTGAGCCTGGCATAGAGTACCTAATAAGTGTCTTTGCTGTCCTGAACAGCAAGATGAGTGTCCCTGTCAGTGCCAGAATAGCCACACATCTTCCTGAACCCGAGGGCCTGAAATTCAAATCGGTTAGAGAGACCTCAGTGGAGGTTGAGTGGGACCCCTTGAACATCCCGTTTGATGGCTGGAACCTCATCTTCAGAAACACAAAAGAAGAGGATGGAGAGATTTTGAACTCTCTCACCCCTCCTGAGACCACCTTTGAGCAGTCTGGTCTTGGACCTGGACAAGAATATGAAGTCAAGCTTGAGGTTGTAAAGAACAACACCCGCGGACCCCCAGCCAGCAAGAACGTTGTCACAATGATTGATGCTCCCAGCCAAGTGGATGTGCGTGATGTGACAGACACCACAGCCCTTATCACCTGGCTTCAGCCTGTCGCTCAGGTGGACGGGATCTCTCTGTCCTATCGCCCTATCACAAATttagacaaaacaacaatagaGCTTTCCTCCATAGATACCCAGTATCATCTGGCTGAGCTGTACCCTGACACAGAGTATGAGGTCTCTCTCATGGCTCGCAGGGGAGAGATGACCAGCTTTCCGGTCGATGAGCGCTTCACCACAGACCTTGATGCCCCCAAAAACCTCAGGGCGGTTGAACAGACAGATGAGAGCATAACTCTGGAGTGGGAAAACAGCGAGGCCAATGTCTTCATTTACCGCGTCAAATACGGCCCAATTTCTGGAGGGGAGCATGGAGAGCTGGTCTTCCCCAGCGGCCCTAAGGATACCACTCAGGCTAAAATCACTGGCCTTAGGCCCGGGACGGAGTATGGAATGGGCGTGACGTCAATCAAGGAAGAGCGTGAGAGTTTGCCTGCAACGACTAATGCTGTGACTGATATTGATGCTCCCAAAGACTTTGAAGTAAGTGAGACCACAGAGACCACATTGGCACTGGTTTGGAGGAGACCGGTCGCCAAAATCGACACCTATACGCTAGCGTTTACATCTGAGGATGGAACTGAAGCTGAACACGAGATACCTGGTGCTGCCAATACCTACATCCTCAGTGACCTGTCCCCCGGCATGCTGTACACCATCAGCCTGACTGccaagagaggaagaaagatgAGCGCACCAGCCACTCTGTCAGCATCCACAGGTTTGGGAACACCCAAGGGGATACGCTTTTCTGATGTGACGGATACATCGGCTACTGTTCACTGGACTTTGCCTCAAACCCATGTAGACAGCTACCGGGTCACCTATGTGCCCATTCAGGGTGGCAGCCCTATGACACTGAGAGTAGATGGAGGAGAATCCCAAGCCATGCTGCCTAATCTGACCCCTGGAGTGACCTACCAGGTCACTGTCATCGCTGTGAAGGGCTTGGACGAGAGCGAACCAGGATCTGAGAGAGTCACGACAGCCCTGGATAAGCCGAGAGGTCTGACAGCAGTCAACATCACTGACACTGAAGCTCTGCTGCTGTGGCAGCCGTCCATTGCTACTGTGGATGGATATGTCATCACTTACAGCGCAGACAGTGTGGCTCCAGTGATGGAACGGGTGTCTGGGAACACTGTGGAGTTTGAGATGAGCTCCCTCACACCTGCCACCTTATACACTGTTAAAGTCTATGCTGTCAGAGAGGCAGCCAAGAGCGCCGCAACCACCACAGAGTTCACCACAGATGTTGATGCCCCTCAGAATCTGGCTGCCAGTAATATTCAAACAGAGAGCGCCATGTTGACATGGAAACCACCAAGAGCAGACATCAGTGGGTATATCCTCAGCTTTGAGTCTGCTGATGGCATCGTGAAGGATGTTGTCCTTAGCCCCACGGCAACATTTTACAGCATGTCTCAGCTGACTTCCTCCACAGAATACACAGTCAGACTGCAGGCCATCGCTGGGCCGAAGAGAAGCAGAATCATCTCCACAGTCTTCACCACCATTGGAGTGCTATACAAGCATCCTAAAGACTGCTCGCAGACTCTGTTAAACGGAGAAGCAACCTCGGGCCTGTACACTATTTACCTTCGTGGAGATGAGAGTCAGCCTCTGCAGGTCTACTGTGATATGACCACTGATGGAGGAGGCTGGATTGTGTTTGTGAGACGGCAGAGCGGTAAAGTGGAGTTTTTCAGAAACTGGAAGAACTACACTGCAGGCTTCGGTGACCTGAATGATGAATTCTGGTTGGGTCTCTCTAACCTCCATAAGATCACCTCCTCTGGGCAGTATGAGTTGCGTGTGGACCTCAGTGATAAGGGAGAGTCTGCATATGCGCAGTATGACAAGTTTTCAGTCTCAGAACCACGCAGTCGCTACAAAGTACATGTTGGCGGATACAGCGGCACTGCAGGTGACTCAATGACGTATCACCACGGCCGTCCATTCTCGACCTACGATAATGACCACGATATAGCCGTCACCAACTGTGCTCTGTCTTACAAGGGAGCTTTCTGGTATAAAAACTGTCATCGAGTGAATATAATGGGACGATACGGCGATAACAGTCATAGCaagGGTGTAAACTGGTTCCACTGGAAGGGTCACGAGCACTCCATTGAGTTTGCAGAGATGAAGATCAGGCCTGCTAACTTCAGGAATTTCGAGGGAAGGAGAAAGCGATCGTAAACCAGTGAGCTCCAACCCAGACCCAAGCAACCCTCCACTGCTGACCATTCGCCCCTCGTTTCTCCTGCATCATCTCATCCCCTTCATCTACCAAAGTCACTGCCAGGAGCCCAGCCAGCTCTTCACGCTCTCCTATTCACGGAGaacaagtacaaaaaaagttttcacccTCCCATTCAAAGCTACAGCCAATACACAGTTGTGTGTGTACCACTTCTGTGCAAGTCAATCTGACAGAAAACCAATAGACTCATAGTGAAGTGTTTAACATTACACACTGTGCCTGTACATCATATGCACACCAAAGACAGACACTCCAGTAACATCTATATGATACAATGCCTACGGAGAGGAGATTTTGAGTTTGGCTCGGTGCTTtccagtttaaaaaataatgatattattcTTTCTGTATATCCCATACAGTTACAGTGGGAAGAgttgaatgtttgtgtgtggtaTTTTTGCTTCAGAGCCTCTTCCCTAGACTGTGAAATAGCCTCCAGAACTATTTATCCTTTAACTTCTCTATTAGGGCGAGAAGGTTAATGGCACATGATAAAAACTCGGCATTTAATATGCAGGACTGCATAAAAAACATCTAGTGGGGAGGCTcagagattttttatttttattttttttttcatctctttagtCTGTGACAAATCTAAGTACCCATgctctctgttttctctctcccacAACTCATGCATTTATCAGTTCAGAAGTGGCACATTTCTGGAACCGGTACATACACAGTACTGCTAAGTGTTCATTTATATGCACCTTTTGTCGTGTTTCCTGTACCCTATAACTATATTGGCATTCGGTCACAGAGCATAAGAATCTTGATTTGCTGATTTCTATCctctaaaaaaagatttaaacgAAACAAAAGTTAAGGCAGGACCTATGTTCAGTCTTTTGTTTAAGTGATAATGTGTTCGCCAGTTATGAGCTTGTATAATGTTCAAAATTCAGGAAAGGTAAAAGTAATAGCCAGGTGATTGGAATTATTGTAAACATAGCCTCATATGAAAGTTctgttggcaaaaaaaaaaagaaaaaagaattaaTATACAGAATAAGTCTTCGTGTTCGCCCCTACCCTGCTATCGACTAAACCACTGACCCTATACAATACCTGTGTAAATTATGTCTCGTTTTggtatttgaatatttttgtttgtttgtttgtttattaaatgggTGTACAACAGGTGTTTCTTTGTAACCCctcttacaataaaaacagattttgtttaataaa

Function

GO:

id name namespace
GO:0014814 axon regeneration at neuromuscular junction biological_process
GO:0007498 mesoderm development biological_process
GO:0021554 optic nerve development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0045887 positive regulation of synaptic growth at neuromuscular junction biological_process
GO:0007411 axon guidance biological_process
GO:0048680 positive regulation of axon regeneration biological_process
GO:0007413 axonal fasciculation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50809 lncRNA upstream 71561 8993896 ~ 9001220 (+) False G34480
TU50825 lncRNA upstream 71561 8993896 ~ 9001220 (+) False G34480
TU50811 lncRNA upstream 71561 8995398 ~ 9001220 (+) False G34480
TU50814 lncRNA upstream 71561 8999260 ~ 9001220 (+) True G34480
TU50798 lncRNA upstream 133411 8938265 ~ 8939370 (+) True G34472
TU51097 lncRNA downstream 142044 9246910 ~ 9248013 (+) True G34689
TU51096 lncRNA downstream 143393 9248259 ~ 9251790 (+) True G34688
TU51161 lncRNA downstream 255993 9360859 ~ 9433507 (+) True G34725
TU51186 lncRNA downstream 373739 9478605 ~ 9565907 (+) True G34747
TU51300 lncRNA downstream 660270 9765136 ~ 9765347 (+) True G34840
XM_043239829.1 mRNA upstream 56400 9008526 ~ 9016381 (+) True traf2a
XM_043239830.1 mRNA upstream 56400 9008526 ~ 9016381 (+) False traf2a
XM_043240274.1 mRNA upstream 81758 8972917 ~ 8991023 (+) True npdc1b
XM_043240275.1 mRNA upstream 81758 8972919 ~ 8991023 (+) False npdc1b
XM_043240270.1 mRNA upstream 100713 8950384 ~ 8972068 (+) True niban2b
XM_043238680.1 mRNA downstream 634 9105500 ~ 9107204 (+) True b3galt8
XM_043240637.1 mRNA downstream 3083 9107949 ~ 9123877 (+) True zgc:162952
XM_043240638.1 mRNA downstream 3084 9107950 ~ 9123877 (+) False zgc:162952
XM_043240551.1 mRNA downstream 174251 9279117 ~ 9287528 (+) True zgc:110329
XM_043240186.1 mRNA downstream 190330 9295196 ~ 9316541 (+) True slc4a5a
TU50789 other upstream 201263 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 768630 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 1062182 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 1274813 7754074 ~ 7797968 (+) True p2rx1
XR_006251015.1 other upstream 1506205 7558940 ~ 7566576 (+) False svopb
TU51316 other downstream 691524 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU51450 other downstream 959351 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 1624252 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 1821957 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 1941614 11046480 ~ 11062314 (+) False map7d2a

Expression Profile