RNA id: XM_043240202.1


Basic Information

Item Value
RNA id XM_043240202.1
length 4308
RNA type mRNA
GC content 0.46
exon number 2
gene id amer1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11865198 ~ 11871038 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCCGGGCTTTGACCGTGAACgTATAAGATGTCTGATAAACACAGTCCCTATACCTTCCAGCCTGCCTCTCAGGGTGGAGTATTCACTACAGACATGCTCCATTAGCCACAGTCATCTGTGTCAATATGGAGATTGCCACAGGAAGTGAGGTTGTAGGTGCAGTAGGGGGTCCACAGACAGACTCTGTTTCCCATGACAGCGCTCAAGCTCAGTCACCCCCGTCTGTGAAAATACGGAAGACAGCTTTTAGGTTTTTTGGTGGTCGGAAGAGCATCTGTGTTTTGCCCAGCTTTTTCGGTGGCCGTGGCAGAAGTCAAAGAAAGGGTTCATCAAAAACAGGTGTTACAAAGAGCCAGACATATGATGGGGTGAgcagagcatgctgggaagaTTTGGGCAAAGGTAGCAGTGAAGCGGCATCAGGGGACTTTGAGTTTTGCGCCTCCAGTGATCCTCAGAAACCACAGGAGGATCACGGGAAGTCTCAGTCTCTACCACGACAGCGCAGAGGCCTTCGGGGTCTTTTTAGCAGCATTCGGAGacacaggaaaaacaaaaatgttgaaatagaAAAACGCGAGGCACTTGAAATGTCTTCAAACTTCCGTTCTGAAACCGTGCCTGGTGCCCTGTCAAGTATCAGTGACCGTAGCGAAGAGTTGGTGCCAGATGTGCCTAATCAATCCACAGGCAGTGAATGCGAACTGCCGTTGGCTGCCACTGAATGTACGAAAGATGTAACGCTAGTGCCTGAAAAAAGGAGGAGCAGACTGGAGGTGGATAAGAGGAAGAGAGCAAAAGAAGAGGAGGATAAGGAGGAGGAGATACAAAATGCGAGACGGGAAGGACTGACAACATATCATCAGCCCTTGTGTGCTGAGTCAGAACTGGACCGTTTGGCTGAACAGAATGTGGACATTCCTGAAGGGGAGCCTCCTGCTGTATCCTGCTCCTCTGAAAACTTAAACTTTGGTGATGTTTCATCATTGAAAAGCTTTGATTCACTGACTGGTTGTGGAGACATCATCGCAGACCAGGATGATGTCAGTGTTGCAGAGAGCTCTGTGTCTGCCGAGAGAGGCAGTCGAAACGCGGGAAAACGGAGCTCGTGCTTTGTCACATATCAAGGTGGAGGGGAAGAGATGGCAACTCCCGATGAGATAGACACAGATTACTTGCAGAGCCTGTGGGAATCTGAAACTAGCAATGAAGTCTGCTATGTCCCCTCAGACATGGGCTCCGATAGCCCTTCGCTTACTCCCGATCAGCAGATGAGCTCCATTCATGCCACTTCCAACAGCAGCCCACTGGGAATCACAGAAACGGCCCTCACTCCTGTTGACCTCTTGAGCCCACAGAGCGATCGGCAGGAGTCTGTTCCAAACAGTGATGAGGGATACTATGACTCCACCACGCCAGGTATGGAGGAGGAGAATAGAGAGCGTCCTCACCAGGAAAGGCTTCCAAGGGACAGCTACAGTGGTGATGCCCTTTATGAGCTTTTTGAGCCTGATGATCGTCTACTCAGCCCTGCTCTTCCTCCCAAGGATGCCCACAAGTTTGTTGGTGCAGATAAGAGTCCGACAAATCCTCTGTATGCCCTGGCTTCCTCTGCCCTAGAGACAGGAACAATGGAGACGGAGGAGGAGCGTTTGAGCAAGATCCAACATGCCCTTCTGTGCTGCGAGCTGCAGAATCTCAGAAGCCCATCCAAAGATCAGCTTCTGTTCCACACAGACTGCTTCTATGATGATTCGAGCCTTTCCACAGGCAATGGTAAGATGGTTTTGGAGGAAGCCATAAATCAGTGCTATCCCCAATCGCCACCAAGATCCCAAGCTGTGAAAGAGCCAGACCCTCTCAGCAGGGGTCAGATCCAGGGGACTCCATTATTTGCAGATTCAGGGTTTAGTCCGCATGTTGCTGAGAGCACCAGACGGCAACCTCAATCTGAGGGCCAGAGCCCATTACTACCCACCAGAGGCTACAGTCAATCTCAAGAAGAGCTGATGGTCTGCTTCTCCCAAGCACTGGTGGATTTCACAAAGAACACCCGGCTTTACCGCAACTCTACTGAGAGCCTTGATGGCTCAGAGTCGAGTTCTCCTTTCCGGCCAAGTCTGAGTGCCCTGCCCGCCATTGTCACGTTCGATGTGGTTGACATGGAGAATGAGGGTGAATGTGAGCAGCAGACCGAACTTgttgaggaggaggaggaagagctAGCATCTCCTTATGAACACTTCGAGGATGATGGCTGTTACCTTCAGCAGGATGCCTTTGCTGAGTGTGACCAGCGTACCTTTGATGCCTACGAACAAAGTCTCTTGCTTAGTAACGCTTGGGGCATTGCTAGCCTGCCTCGCCACCTCAGTTTGGGTCGACCTTGTCCTCCTGTCCCTGCCCCATTAGCACTAAACCGGCGCAGTCGCTCTCTTGATACGGACAGTCTGGAGTTTCAGACGAGTGAGCTTTACACCAACTGTGACTCTGGATTTTCACAGCGTAGGACTGCTGATTGTAGTGATACGGCATTACCGCGACAGCCCTGCAGGGTCACTGTTGATAGTTGGCGGCGGGGCTATGGGCGGGGTTTTGAGTCTTCAGACTCTTCCCAGCAAGAAGCAAAGTTGCCACACGTGGGCCAATCAACTGTAAGACCTTCATATCTCCCCCTAAAGAACAACTGCCGTAATCGTAACCACCCTGGAACCGCTAGAGCCGATGGTGATGGGGAGATTTTGTTCGGGGGAGGCGATGCCCTTTACCCTTGCAGTTACCCCCCTACAGGTATGCAGTGGAAGAATCGACCTGTTGGGGTCACTCAAGGTGTGCCCCACCTTCGCTCCGAGCAATCGTCAGACCATCGAGAAATTCCCATAAAGAACCGGAGGGGGGAACTTGAGGGTGGCTTCACTCCTGCACCACCCAAATTATAAACAACCTCTCCTACTCTaagtaaaacaatacaaatagaCAAGTCTCGTCACCAAAGACGATGCTGGATGTTTACTGACAGTCTTGAATTGTattccactcacacacactgtagtTGCTGTTACTGCCGGATAAGCTATTGTATTCTTTTGTGATGTACTGTGTAGTTTTTGAGCTATGTTTTAGTTTAAGAGGACTTGTATTTGTACCTGTATTTGTTACAGCATTACTCAGCAGGTGCTGTCTATATATAGATGCCATATTGCTTTGCATTTATGTAGCCAGTTATCGCTAACGAAATTGATCCATTTggttttggatttgttttagGTTCATTTGCAAAAAGACAACAACATATAAATTGTTTTAGCATAAGAATGAAAACCTTCATTAGCAAATTGAAACCGATATCATCTTAGAAGTATCAAACCtagtttgtaaaaatattttttaattttttaacactttttgttttgaaatcaaaaatatgctgtatgtttcaaggttttaatgtttacatctTGGAACTTTTTAAACTTCTCGTTTAGCTAGTCACACATTTCTTTTATACTGCATTTTCTTGTTTTCGGAGTAGCACATGCTACTTTCATAGGCAAAATGCCCATTAAATGAGTGGCATTTTGGCCAACGTCCTTGATACACTTCTGTACTTTATTTACTGAAGGCTTAAGGATCTGAGTGTAGAATCTGGTTTGTTTCCTTTTGTGCTGCTAAACAGTAAGTGATTGTTTGGGATTGCATAATGTACTGTATTAACTGTATGGATATCTGCGTATTTGAGTATTCTCTGCATACATTCAAGTCAGATCTGGCCTGAAGTCTTCAGTAAATATGATCTATGTAGTTGATAATCAAAGGGTACTATCTCGAGTCATTTGAGAGAGAATGTCAGTAAAGCCTTTAATGACATTATGTGATTGTTCTGTGCTGTTGTACTACAGTCACAATCATCTACCCTCATCAGAATGCCAAAGTCAGATTAATGCACTTACCATTTTTACCAGTGCGTATATTCAGCTCTTAGGAATTAATCAACCTTTGTGTTTCCTTGCAGATCAATCCAGTACTGTTCtataattaatgttttctttttatttcttgcatTTGGTACATTTGTGTGATTGTCCATACCCTGTTTTTAGACGTATCAGAAAACCAAAAGCATCCCCCTTCccgttttgtgttttaatacgCAAGTATGTACATGCACAGACGAAGAATGTTAGAACATCACTAAAACttgacattcattttcataaggTTTAAACATATCAACCACATCTGTTGGACGCAATCCCTTTCCACACATGAATCAACACTGACTGGAAATAAACCCTTAATAGACATCA

Function

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52458 lncRNA upstream 89859 11773986 ~ 11775492 (+) True G35629
TU52435 lncRNA upstream 136750 11728276 ~ 11728601 (+) True G35606
TU52389 lncRNA upstream 157578 11707531 ~ 11707773 (+) True G35585
TU52388 lncRNA upstream 158353 11706659 ~ 11706998 (+) True G35584
TU52094 lncRNA upstream 212668 11650628 ~ 11652683 (+) False glra4b
XR_006251023.1 lncRNA downstream 72399 11943437 ~ 11986820 (+) True LOC122345698
XR_006251022.1 lncRNA downstream 109317 11980355 ~ 11986820 (+) False LOC122345698
TU52608 lncRNA downstream 302245 12173283 ~ 12182024 (+) True G35733
XR_006250985.1 lncRNA downstream 407092 12278130 ~ 12279983 (+) False LOC122345282
TU52639 lncRNA downstream 408197 12279235 ~ 12283749 (+) False LOC122345282
XM_043239568.1 mRNA upstream 909 11861044 ~ 11864442 (+) True asb12a
XM_043239569.1 mRNA upstream 909 11861044 ~ 11864442 (+) False asb12a
XM_043239567.1 mRNA upstream 4379 11852291 ~ 11860972 (+) True mtmr8
XM_043238910.1 mRNA upstream 20082 11841464 ~ 11845269 (+) False zc4h2
XM_043238754.1 mRNA downstream 5927 11876965 ~ 11901271 (+) True arhgef9a
XM_043238755.1 mRNA downstream 5928 11876966 ~ 11901271 (+) False arhgef9a
XM_043240105.1 mRNA downstream 53191 11924229 ~ 11943110 (+) True smarca1
XM_043240106.1 mRNA downstream 57566 11928604 ~ 11943110 (+) False smarca1
XM_043240056.1 mRNA downstream 166410 12037448 ~ 12164936 (+) True tenm1
XR_006251083.1 other upstream 803037 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 932188 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 1134299 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1747225 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 2065993 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 53190 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 378100 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 378100 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 643038 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 832333 12703371 ~ 12705241 (+) False iscu

Expression Profile