RNA id: XM_043240203.1


Basic Information

Item Value
RNA id XM_043240203.1
length 1581
RNA type mRNA
GC content 0.44
exon number 9
gene id psat1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27415308 ~ 27421004 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGAAACCGGCACATTAGGTGTAATCATGTGTAAAGAGAATAATAGTGTCAGTCCGAATCGCTCAGAGATAAGTAGGTCAAGTGGAGGAGTTTCTGAAAGATTTAAATCCCGCGACCATAAcagacagttttatttaaaaacatggagAAGAAACAGACGATCAATTTCGGAGCGGGACCGGCTAAACTTCCACAGTCGgtTTTGCTTCAAGCACAGAAGGAGCTGCTGGATTGCAGCGGCACTGGGATAAGCATACTTGAAATGAGCCACAGATCGTCCGATTTCTCCAAGATTATAAACACTGCTGAAAACCTCCTCCGTGAACTTCTGATTGTCCCGGAAAACTATAAGGTACTGTTCCTGCAAGGCGGAGGCTCAGGTCAGTTCAGCGGGGTTCCTCTCAATCTTATTGGTCTGAAGGAGGACAGGTGTGCTGATTATCTGGTCACAGGGACCTGGTCTGCAAAGGCAGCCAAAGAGGCAGAGAAGTATGGAAAAGTGAATGTGATTCATCCAAAGCTGGATAGCTACACCAaaatacCAGACAGTAGCACTTGGTCACTGAATCCTTCAGCGTCTTACGTCTACTACTGCTGCAACGAGACGGTGCACGGCGTGGAGTTCAACTTCATCCCGGACACTAAAGGAGTAGTTCTCGTTAGCGACATGTCCTCCAACTTCCTCTCCAGGCCGGTAGATGTGTCGAAGTTCGGTCTGATATTTGCTGGCGCACAGAAGAATGTTGGGTGTGCTGGTGTGACGGTCGTCATCGTCAGAGAGGATTTGATGGGCAAGGCTTTGAAAGAGTGTCCTATCATATTGGACTATCAGGTGCAGGCTGGCAATAACTCTCTCTACAACACTCCTCCGTGCTTCAGTATTTACATTATGGGATTGGTTCTGGAGTGGATCAAGAACAACGGGGGGGCGGACGCCATGGAACGACTAAACAAGCAGAAGTCTGACATCATCTATGACATCATCAACCGCTCCGATGGATTTTACTCATGCCCGGTTGACATGGCGTGTCGAAGTCGCATGAACGTTCCTTTCCGCGTCGGAAAGAAGGAAGGGGATGAAAGTCTTGAAAAGGCTTTTCTTGATGGTGCTTCTAAACTTGGCATGATCTCACTGAAAGGACACAGGTCTGTGGGAGGCATCCGGGCTTCCCTGTACAATGCAGTGACTGTAGAAGACGTGAAGGCTCTTGGCGCCTACATGGAAGAATTCCTGAAGAACCACTAGTCGCTTAAAACCCTTTTTTGCAAGTAGTAGTTTTTACTTGCATTGAAAAGTGCTATCAGTACCTTTTAAACAGCAGTGACATTTGCAGCATTTAttgcaacaaaaacacaaaacactaaTTCACTTTTCTTTCAGTAGCAGTTGGTCGTCATTGTTGCATAACATTTTAACTAATCTTTTATTCAAATTGTAGTGTGCCTTAATACGTgtaaaatttgtatttgaatTGTTTTCCTAAACATTCCATGTTTtactaatataaatgtgttattagtAGCTGAATGGACTGAATGCTGTGATAAgggcaaaaagaaaataaaatactactaaaatca

Function

GO:

id name namespace
GO:0006564 L-serine biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004648 O-phospho-L-serine molecular_function

KEGG:

id description
K00831 serC, PSAT1; phosphoserine aminotransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59046 lncRNA downstream 129114 27285182 ~ 27286194 (-) True G39893
TU59040 lncRNA downstream 148079 27265289 ~ 27267229 (-) True G39888
TU59023 lncRNA downstream 181146 27232658 ~ 27234162 (-) True G39872
TU59020 lncRNA downstream 189746 27224887 ~ 27225562 (-) True G39870
TU59004 lncRNA downstream 226086 27188850 ~ 27189222 (-) True G39857
TU59120 lncRNA upstream 117484 27538488 ~ 27538861 (-) True G39935
TU59121 lncRNA upstream 117936 27538940 ~ 27539327 (-) True G39936
TU59154 lncRNA upstream 229446 27650450 ~ 27650827 (-) True G39951
TU59171 lncRNA upstream 327456 27748460 ~ 27789829 (-) True G39964
TU59253 lncRNA upstream 474639 27895643 ~ 27895961 (-) True G40021
XM_043239914.1 mRNA downstream 309 27399413 ~ 27414999 (-) False tut7
XM_043239913.1 mRNA downstream 309 27399413 ~ 27414999 (-) False tut7
XM_043239917.1 mRNA downstream 309 27399413 ~ 27414999 (-) False tut7
XM_043239912.1 mRNA downstream 309 27399413 ~ 27414999 (-) False tut7
XM_043239915.1 mRNA downstream 312 27399413 ~ 27414996 (-) False tut7
XM_043240205.1 mRNA upstream 752 27421756 ~ 27431616 (-) True tmem116
XM_043240204.1 mRNA upstream 752 27421756 ~ 27431615 (-) False tmem116
XM_043239077.1 mRNA upstream 13573 27434577 ~ 27436450 (-) True zgc:153044
XM_043239076.1 mRNA upstream 18077 27439081 ~ 27445470 (-) False kiss1rb
XM_043239075.1 mRNA upstream 18077 27439081 ~ 27445470 (-) True kiss1rb
TU59072 other downstream 16588 27382921 ~ 27398720 (-) True isca1
unassigned_transcript_1081 other downstream 1303906 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1305738 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1313899 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1323312 26091926 ~ 26091996 (-) True trnag-gcc_61
TU59237 other upstream 468119 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 834824 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2039581 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2195995 29616999 ~ 29655061 (-) False eng
TU59650 other upstream 2505381 29926385 ~ 29926833 (-) False LOC122344966

Expression Profile