RNA id: XM_043240205.1


Basic Information

Item Value
RNA id XM_043240205.1
length 3015
RNA type mRNA
GC content 0.45
exon number 11
gene id tmem116
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27421756 ~ 27431616 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGTTACTCCAGCGTCTTCTGAATAAGTCGTTACTTTTTCGGGATGCTCTGCTAGCAATCAGAAAATTGTTGCAACTGTTATTTGGCGTAATTATATCACGGACCTCGAGAGgaatattaacattaatgtcAACTTGATCaatatattgttacattttacaacatGGACGTTTTTGGCCAAAATAAGTCGCAGATGAACACCACCACTCCGACTGAAAACTGGACATCTatATACTCTATAGTCCGATGGATTCAAATAACAATGGCCGTCCTAAGCATTTTAGGTGCTGGCTCCATAATCGTATGTGCCTGTTTAAAAGGACTAGTAAGAAAAAAGAGCAAACCTCTACTTCAGGTGCAGCCGTTATTCCTGTTAAGTGTAACAGACCTGCTGTTAGCTCTGAGTTGGATGTGTGGAGGTCTTCTCTTCACCGAGTCCTGTAAATCTTACGCCACCTGCTACAATCTTCACATAGTGGAACAGACACTTTACATGGCCTCGTTCTTCTACACGCTGCACTATGTTTTGGTGCTCTACACCGGACTAAATGGGAAGTACAAGAGACTCAACGGTTTCCCAGCCGAGAATCCAGCAAACGCAAGGAGCTGCAGATGTCTCGCTCCTGTATTTTCGTGTCTTTTGCCTTTAATGCTCACAGCGCCCGTGTTTGTCACAGGAAATGTTTTTCAGTGTTACACAAACTTCACCCTGCCCTACAGATGTTTGCTGATGCATACAGGGGCTGTGTATCTCACCTCATctgtaaatacagaaatgactGCATGTAGAGTCATTCAAGACTACTGCATGGCCATTTTCCTCGCTACCTTCTTCGTCACCTTCATTGGGATTACGACTCTCATGTGTAAAGCTCGCTCTCTGTACAAGCGTGTCATCACGTCTCAAGGTTTCTTTGGGGACAATCACTGGGAAACTCTGCGTCTCCTGGAACGCCGTATGCTGCTTTATCCCTCAGCCTTCTTCTTCTGCTGGGGACCAGCAATATTTCTGGCCACTATGATGTTGGTGAAACCGGACATAATAGAAGGAAAGATGGGAGTCGTCCTCTACATCCTGCAGGCCTTCACCTCCGCCTCTCAGGGGCTGTTGAACTGCCTGGTTTACGGCTGGACGCAGCAGCACTTTCGCTCTCTCAGCGGCGGCACCGGCACCGTACGGGACGCCGACACCCAGACCCCCCTGCTGCGCTCCCAGAAACGGAACTACGCTGCTTTGAGATCTGCTGCGTCGCTCGCCAATTTTGTCTGACAGGGAGACGCGCCGAGAAGATGGCGTTCAACCAAAGCGACTGACAGATCGAACCCACGTCTTGGCTGTTGCGAGCGGCGCGCTCTGCTCAGTCGAGCCACCGGACAGTCGGTACAGCGCGCGCTGCGGTGTCGGGAAAAACTGATCTGTGATCGGTCATGTGCGAAACGCGAAAGAAGCCGTTTGTTTTGCTGCAGCGCCGAAAAGGGGAGCCGGACGTTTGTTTCATCTGCCTCGGTTTTGTTTCGAGAATTTATGCGCCGCACCTGCTGCTAGTTGAGCTGAGCCTCGTGCTTTTTGACACGACGGAGACTTTCAGATCAAGACGCGCTGCTGAGCTGTCGAAAAGGGAAAGACCGAAGGGAGATTACGACCAGAGGGAAATAGCTCTGAAACAGGATCTGAGAGGACAATGCTGCAGCTTTCCATccgcaaaacacacacacacacacacacacacacacacacacacacacacgcatacatacatatacatacatacacatagaGGTATTAATTGGCGCGAAGGAGCGTGAAATAAATCGTTTCCTCTTAATAAACAATACAGCTGCGAGCAGACCTTTCGGCGGGTTTTATGTTTGAAGAACGCAGCTGATGAGAAAGATAAGTTGCAGGAAAAGCACCTTGTCAAGctagcagcaaaaaaaaaaacaaaaaacataaaataagcatttttcgTGAATTGAGgcctttactttttaatatttcgattttttaattctgaacgcttaaaagggattaattcacacaaaaatgaatgtttagaaATGAGTAACTTGTTTCGCGTCATTTCAAACCCATGAAACTTTAGTTTATCTTTGAAGTGAAGATATTCTTAAGGAATCTTGACTGAGTTCTGTCCTGCCACCTTCAGAGTAATCCGGAATAAATCTCATATCGTTTACGTGACCTTTCCGCGGAAGGACAGAAATCTCTTGGGTTTCACTAAAATCTTTATCAGCGTTGCAAAGACGAGCAGAAGTCTTGTGTGTTTAGAGTGACGTGAGGGTGGGCAACTGATGACAGGTTTTTGGGCCAACTATTTAAAATACCTGTGGGGATATCTGTAGTTGGTCAAATGTTGTAGTTACGCGATGTGTCACCAAGCcggcagagggagcccttaccccTGGATGACCTGTGATCActgcctctgctgctacttcctgtttctgGACTATAGATTctgaagcaggcccctcacctgcagctTGCATTGAATATTTGTTTGATTgattgtctgtctgtttctggtTCTCCTAGCGTTTCCCTTgtcatagattctttggttttgaccctgcctgtcttttgatTCTTGGATTgcttgctgcctgacccgacctctgcctgtgtTTTTGgttctgttgttgccttgcctcgcCTCTTATACTCCCGTTTGCCTTCagccaataaaagcctgcgaatGGATCCGCGCGCCTCGGACCCCTCAATCATGACactatgtaaaatatatatttttaataccgGAGCGCAATCCCTGTTACGTTTTTGAACTCCTCGTTCTGTAATTACAAACAGCTGGAAAAGTCATGCTGTAAATGACATTCGTACTGTTTTCCTCTTTTACTTTGGTTTACATTTGTCCCATGACAGAATAAGTATTACTTTAATTCAAgcgttttattacatttcatgcgtgtgtgtacatagtttttatacattaaaaagtgtatgaaacattttattaaaacgttGATAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59046 lncRNA downstream 135562 27285182 ~ 27286194 (-) True G39893
TU59040 lncRNA downstream 154527 27265289 ~ 27267229 (-) True G39888
TU59023 lncRNA downstream 187594 27232658 ~ 27234162 (-) True G39872
TU59020 lncRNA downstream 196194 27224887 ~ 27225562 (-) True G39870
TU59004 lncRNA downstream 232534 27188850 ~ 27189222 (-) True G39857
TU59120 lncRNA upstream 106872 27538488 ~ 27538861 (-) True G39935
TU59121 lncRNA upstream 107324 27538940 ~ 27539327 (-) True G39936
TU59154 lncRNA upstream 218834 27650450 ~ 27650827 (-) True G39951
TU59171 lncRNA upstream 316844 27748460 ~ 27789829 (-) True G39964
TU59253 lncRNA upstream 464027 27895643 ~ 27895961 (-) True G40021
XM_043240203.1 mRNA downstream 752 27415308 ~ 27421004 (-) True psat1
XM_043239914.1 mRNA downstream 6757 27399413 ~ 27414999 (-) False tut7
XM_043239913.1 mRNA downstream 6757 27399413 ~ 27414999 (-) False tut7
XM_043239917.1 mRNA downstream 6757 27399413 ~ 27414999 (-) False tut7
XM_043239912.1 mRNA downstream 6757 27399413 ~ 27414999 (-) False tut7
XM_043239077.1 mRNA upstream 2961 27434577 ~ 27436450 (-) True zgc:153044
XM_043239076.1 mRNA upstream 7465 27439081 ~ 27445470 (-) False kiss1rb
XM_043239075.1 mRNA upstream 7465 27439081 ~ 27445470 (-) True kiss1rb
XM_043239073.1 mRNA upstream 7465 27439081 ~ 27443839 (-) False kiss1rb
XM_043239071.1 mRNA upstream 13923 27445539 ~ 27457103 (-) False mapkapk5
TU59072 other downstream 23036 27382921 ~ 27398720 (-) True isca1
unassigned_transcript_1081 other downstream 1310354 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1312186 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1320347 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1329760 26091926 ~ 26091996 (-) True trnag-gcc_61
TU59237 other upstream 457507 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 824212 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2028969 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2185383 29616999 ~ 29655061 (-) False eng
TU59650 other upstream 2494769 29926385 ~ 29926833 (-) False LOC122344966

Expression Profile