RNA id: XM_043240206.1



Basic Information


Item Value
RNA id XM_043240206.1
length 2165
RNA type mRNA
GC content 0.39
exon number 1
gene id LOC122345763
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9165895 ~ 9168059 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGGAGTACCAGAACATTTCTAACAGCTCTCTGTTTGCCCGTGCCTCAGTGGAGGAGCTGGTTTCCAGCACCGTTCTGGGACTGTGCTGTGCTCTGGGTGTACCAGGTAATATAGCGGTGATGGTCATGCTTGCCCAACATTTAAAGGAGGGCAGTTTCACCCCAAAACTGATGCTGAGTCTGGCCGTCTCTGATCTGCTGAGTCTGATTTTTCTGCCTGTGTGGATCTATGCGCTTCTTAACGGCTGGGTTTTTGGCCGAGGGTTGTGTAAGTTACTTTCCTACATAGTGTACTGGAGCCTTTACAGTAGTGTGCTTTCTGTCACCTTGTTGAGTGTGCAAAGGTTCCTGCAGGTGCTGTATCCACAGCGATGGGCGAAGCTTGGACAGAAGGGCCAAAAGGGACTGATTTTTGGGATATGGATATCAAGTGGAGCTCTGGGTTCTTATGCTCTTTATTTCCGAAATGTGAAGAAGATGAAGGACATGCTTTTACACTGTTATCAGgattatacaaataaacaagaacAACTAGCCGTCTTACTAGTTGAGACTCTAGTGATGTTTGTTGTGCCTCTCCTCAGTCTGTTGTTCTTCTACCTTCGACTTTATCAACGGATACATCAGTCAGCTTCCTTCAAAAGCCACAGGTTGACAAAACTGGCCGTCAGAATTGTAGTGGTCTTCTTCATATTTGGGACCCCGTGTATGATCAACAATTTTGTCTTAATGGCATTGTCATGGAAAACAGCTGTAAGCAACAATTTAACCGGGGCTCTTTTCTTTATCAACAGTTGTGTGAACCCCTTTCTTTATGCCTTTTCAGCTCGAACGCTGCGgtgcagaaaaaaacagcattcagaTGTGCCAAAACATAAGAATGAAACTGAGTAAGCTGTAAAGCAACTATGAAGTTTTTCTGATATGTATGTCTACattaattatttgcttttaaactgtgcaagatatttaaagggTTTCTTCACAGCAGTGCAatagaagaaacatttttggttccatctctttcattttttcataatttggAGAACCCTCCTTCACCACAAAGTACCTTTTATGAAACagaaattatacaaaataatacacattatacagaaacaaatacagttcttctatggcatcatgAAGTACCTTTATTAATGAGAGTGTAAAGGGAAGTGCATATAAAACTTTTCATCATATCCTATTTATGTTTCCTCAGCTTGTAAGCTAAATAAATTACTTCTCCATtcctaaaatattataaataacaattagTATTCCTGTAACAGGACTGTTAAAATCAACCAAAGATATCTTGGTCATGAGTCATGTAGACCACACTTGATATTTTGGCCTCCTTCTTTAAAGAGAGATGACCTTtttcaacaaacaagaaaggAAGTTCAAgcccaaacaaaaaaaaataccaacaaAGActcttttgcatattttgctTGAAATGGATTAAAGTCTAAATCAAAGTGGTTATACAACTGTTTGGTTTATGCctgtaaacatattttacatttttttatatatatatttttgtaatttagcaGTTTTGAACACGTTTAGAAAATAAACCCAACACAGCACCTCTTTCAGTGTACATTTTAactgttgtaattattttttacaattgcTGTTGTAGGTTGGGGCAAATGGTGAATTATTAAGGAAAGTTGtgtgatttaaatattattgataaTCTTAcacattgctaaaaaaaaccccccgaaacaaaacaaaaacagctaaatCAGCCTGATTGGATGGTTTTAGCTGGTCAAGCAGCatggttttagctggtttaagctggtcagcGGGCTGGTTCTAGAGGGCTTTTGGTCACTTACTAGCTGGCCAGACCGGTCTTAGCTGGTCAGGATGGGAAATCAGCTGAAacgaccagctaaaaccagcttgACCAGCCTACACAGGCAgggagaccagctaaaaccagctacttccagcttaaaccagctaagacctgCCAACCAGCCTGGCGTTTGCATTTTTTCCAGCTAGGTTTCTGGATTACtagactacttttttttttttttacctttaacatATTTGCTGTTTTACAAACTGcctaaattatgttaaaaaatcCTAGGTCACTGGTGCATTGTATGTATACAAGGTAACATATGCCTACAGAA

Function


GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU50983 lncRNA downstream 105081 9013306 ~ 9060814 (-) True G34594
TU50996 lncRNA downstream 174582 8991101 ~ 8991313 (-) True G34607
TU50995 lncRNA downstream 174872 8988611 ~ 8991023 (-) True G34606
TU50967 lncRNA downstream 231756 8933911 ~ 8934139 (-) True G34583
TU50966 lncRNA downstream 232815 8932860 ~ 8933080 (-) True G34582
TU51125 lncRNA upstream 78861 9246920 ~ 9248041 (-) True G34704
TU51339 lncRNA upstream 596014 9764073 ~ 9764532 (-) True G34869
TU51341 lncRNA upstream 598209 9766268 ~ 9766607 (-) True G34871
TU51347 lncRNA upstream 609574 9777633 ~ 9778238 (-) True G34877
TU51619 lncRNA upstream 1113350 10281409 ~ 10296141 (-) True G35035
XM_043240500.1 mRNA downstream 177 9137421 ~ 9165718 (-) False nsmfb
XM_043240495.1 mRNA downstream 177 9137421 ~ 9165718 (-) False nsmfb
XM_043240501.1 mRNA downstream 177 9137421 ~ 9165718 (-) False nsmfb
XM_043240498.1 mRNA downstream 177 9137421 ~ 9165718 (-) False nsmfb
XM_043240494.1 mRNA downstream 177 9137421 ~ 9165718 (-) False nsmfb
XM_043240765.1 mRNA upstream 17489 9185548 ~ 9215006 (-) True dnah10
XM_043240615.1 mRNA upstream 47439 9215498 ~ 9220528 (-) True vamp5
XM_043240428.1 mRNA upstream 54495 9222554 ~ 9226598 (-) True vamp8
XM_043238354.1 mRNA upstream 58985 9227044 ~ 9232829 (-) False ncaph
XM_043238353.1 mRNA upstream 58985 9227044 ~ 9232829 (-) True ncaph
TU50964 other downstream 235842 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 488177 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 734320 8429700 ~ 8431575 (-) True timm8b
TU50633 other downstream 751089 8411882 ~ 8414806 (-) True G34372
TU50440 other downstream 1444432 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU51091 other upstream 47449 9215508 ~ 9220507 (-) False vamp5
TU51236 other upstream 169769 9337828 ~ 9402623 (-) True G34789
XR_006251099.1 other upstream 1157056 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 1293149 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 1700305 10868364 ~ 10874064 (-) True G35371

Expression Profile


XM_043240206.1 Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

XM_043240206.1 Expression in each Bioproject

Bar chart with 2 bars.
XM_043240206.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.