RNA id: XM_043240208.1


Basic Information

Item Value
RNA id XM_043240208.1
length 6330
RNA type mRNA
GC content 0.48
exon number 23
gene id si:ch211-26b3.4
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11473112 ~ 11512262 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATTCAAATCATATGCATCTGTCATTGAatcaatatttttcagaaaaagtatataaaacCAATAAGAGCACAAAGCAAGGCATGTTTAGATCGTGACACATTTCAAACTATTCTTCATTCTGTAATCTCGGACGTCCTTATCTGTTACTGCTCCATAACCAGAGCCCCAGAACCCCCAgtttgctttctctttctgtgcACCTTCGATCATTTGATGAGCAACTCAGACTTGCGTTCTCTGTCTATTTTATCGGGTGACCCGGTTTCCCTGGCTCGGTCGGTTGCGGTTACCTCACTGTGCTGCGAAGCTATTGGTCGAGCGGGCGCACTCTCCGACTTTTGCTATTCGAGTGATATTGGGCTGCGGTGACGTAAGCGAACGGGCGCGCAGAAATTTTCCAGACGCGGACAGAGGAGCGAGCTCGCGTAGACCCAAAACGGTCCAAcccagaaagagagagagagagagaaagaaagagagagagagagagagagagaaagaaagagagagagagagagagagagagagagagacgcataCAAGCACGCATACCAAGTAGTCGTTTGCAAGGCGCTCGGCTGCTTGTCGCGCTCAGTATCGGACCCAGTGGAGCTGTTCAGCGTTTATCGGTAGTGTCACCGAACGGTCCCCACGCTCGCGGAACCGCTGACCCATGTGATACTGCAGCGTTGCGAGCGCGGAAGGGAGGGTGGGGGGCGAGAGACACATTTTCCCCCTGCATCTCCACTCGGTAGACTGGAGAAGCAGGTGCACActttggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaacgctGGAGGGGGGGCGGGGTAGAGACGCGAGCGTGGATCTCTCACCGTCGCAGTCCTCCGCGAGGATGTATCCAACAGCGAGGCTCCGTCAATGCAACGGAATCACATGTGCCCCTGTGATCTAACGGCGGTTCCGTTCTGTTTCTCTGGGTTCGGATGGTCCGCGCGTTCCATACGCAATTCAACCGGGAAATCAACGCACACCAGCCATGGCGCTGGTCATGGAACCCATCAGCAAATGGTCCCCGAAGCAGGTGCTGGACTGGatgaaagggtTGGACGACTGTTTGCTGCAGTATATGAGGACGTTTGAGAGAGAGCAGATAACCGGAGAGCAGCTGCTTCACATCACCCATCAGGAGCTGGAAGAGCTTGGCGTGACCCGCATCGGACACCAGGAGCTCATTCTGGAGGCTGTGGACTTACTCTGcgcactgAACTATGGCCTAGAAACAGAGAATTTGCGGACTTTGTCGCACAAACTCAATGCTTCCGCTAAGAACCTGCAGAACTTCATCACAGGCCGCCGCCGCGGGGGTCATTATGACGGACGGGTGTCACGGCGCCTTCCCAACGACTTCCTGACATCAGTTGTTGACCTCATCGGAGCAGCTAAAAATCTACTAGCCTGGCTGGACAGGTCTCCATTTGTCAGTGTTTCTGAGTACTCAGTGCTGAAGAACAACATTGTTCAGCTCTGTCTAGAGCTAACCACCATAGtacagcagGATTGCACAGTGTATGAAACAGAGAATAAGATTCTACATGTGTGCAAGACTCTATCAGGTATCTGTGAGCACATTATTTCATTGTCGTCTGATTCGTTGGTGTCACAGTCCGCTCACCTAGAGGTTGTCCATCTGACGAACGTCATGCCTAGCGAAGGCTTGgGCATGTACATCAAGTCCACATATGACGGTCTTCATGTGATCACTGGAACCACAGAGAATTCTCCTGCAGATCAGTGTAAGAAGATCCATGCAGGTGACGAGGTCATTCAGGTCAATCACCAAACTGTGGTGGGCTGGCAGTTAAAGAATTTGGTCAACTGTCTCCGTGAGGATCCGAGCGGAGTCATCCTCACACTGAAGAAGAGGCCACAGAACACTCTGGGCTCCACCCCTGCACTGCTGAAGAATGCCCGCTGGAAACCACTCGccctgcagCCGCTGTCCACAAGCCCATGCAGTGGTTCTCCCACGCCCCCCAGCACGCTTGGGTCGGTGGGCCTCTCACCTGGAGTGGACACACCTGGAGGACATGATGTGTTTATTCTTTCCCCCGTCTACGGACACAGAGAGGATGATCTGGATCGGGGTGGGTTTGGTGTGTTTGGCTCAGATTCTCCGGGGTATTATGTAGAACAGGAAGTACTAGGGGGTCAGTACTTCCCCCTCCTGGAAGAGGATTCTGGGAGAAATACCGGACTGCGACGCAGAGATCGCACCCCAACTCACAGTGACATCCGACAGGTTTCAATGGGAACTGAATGGCTGGCAGAGCCTCAAGAATCCGGAGTTTACAAAAGAGGAAGCAGAGATTCTGATTCCTCCCTCTTGCGGTTCCTCAGTGATGATAGGATTTTGTTGATCCAGGAAGAGGCAGAGTTTTCCCAGCGTGACACTAGCAGGCGATCCAGAAAGAAGAGCCGAAACCCCAGCAGTCCCAGTTTTCCCATTAGTCCCTCTATGCTTGCCCCTCCTGTGCGTCTGGACACAGGTCCCCCTGAAGGGCTGCCCTTCCCTGTTCCAGACTCGAATACGATGCCACACTACCATAGAGCTGCAGACACACTCCGAGCAGATGCTGATAGATATGCCAGTTCAGGACTTGACCGGCAAGCAGGGGCATCAATGAGGAAGTCTGTACATTACGCCTCTCTGAGGACCAAGCccaagaaaaaaagcaaagGTTCCCTCAGCAGTGCCAGCAGGAGGCGTATTGCTTGCAAAGATCTGGGTCATGGTGACTGTGAAGGCTGGCTATGGAAAAAGAAGGACGCCACAGGCTACTTCACACAGAAATGGAAGAAGTACTGGTTCGTTCTCAAAGACTCCAACCTGTACTGGTACACCAATCAGAACGATGAGAAAGCAGAGGGCTTCATCAGTTTGCCAGAGTTTCGGATAGACAGAGCAATTGAGTGCAGGAGGAAACAtgccTTCAAAGCATGTCATCCCAAAATTAAGAGTTTCTTTTTTGCTACAGATCATTTAGAGGAGATGAACAGGTGGATGAATCGTTTAGGCTTGGCTGCGATTGGCTACACGCCTGATGATCCGGTACCACGTCCTGATGAAGattactGGAGTGAGAGTGACCAGGATGAAGTTGATGGCTCTATGACGCTCAAACAGGAAGCCACGTACCACCACAACCCTCCTGCAACTTCGTCCAGTCCATTTCCTGAGCGCCATTTTTCCAGCGGTTCCACATTCTCGCATTCCTCCGCCGAAGAGTCGCATTCTTCCTGCCGATCCTCCCATCGAGAACGCCGCTCATGGCAGGACCTGATTGAAACCCCCTTGACCAGCACAGGCCTACACTACCTTCAGACCGCAGAAGAGGAGGAGCCAGCCCTGCTGTCACCTGACCAGCACCGACAGGCCACGCTCCCCGCCCAGCGTCGGCGTCCTCTTGAACGTGACGGGCCGTTTCCGTTGACGGACAGCGAAGAGTCCCGGCCTCGCCATCACACTCACAAGCAGCGCAGTCAGAGCCTCCCTCGCCACCGCGACACACACGGACACTCGCACCGCAGCACCCGTACACACgcccacgcacacacacacggcaccCTGAGGCCGAGGACTCATCTccatgaggaggaggaggaagaagaagaggaggaaaagcAGGTTCGCAAATCTAGCAGTAGGAGGCCTGAGAGCGAAGAGAAAGTGTCCGATGGCACGGACGGCCTGCAAGAGCTGTACAGATCATTGGAGCAGGCCAGCCTCTCAGCTTTCGGCCAACAGAGGCCTTCCACTAAACAAGAGTTCAGACGCTCCTTCATCAAACGCAGCAATGACCCCGCCACAAATGAAAGACTGCACCGCATTCGAGTTCTCCGCTCCACGCTAAAGGCAAAGGAGGGCGACTTGGCGATAATCAGTCAGTTGCTGGACGACCCTTGTTTGACCTCAAGGAGGTTTCGTGAATGGAAGCAACGAAACCACGAGCTCTTCCTGGATATCTGTGAGTTCAGCTCTGCACCACTGGAACCGCCCAGCGAGTCCAACGACCTTTCACCTCTCTCGCCAACGCTGATGATGCACACTCACTCTTTCATAGAAACGCACGTGTGAAACAcagtcacgcacacacacaactaaTAAACAGTCACATGCTAAAATACAGACATAAAGGTATATGAATAACGTGAGTCGTGCGTTTCAAACccaatcacacaaacacacacacacacacacacacacacacactttgaaaaACACTGTGGATCCAGACTGTCTTCACTTTTTCCTTGACGGATGACCCGATACTGCCCTCCTCTTGACTGCGAGTGACACAGGATAGAACCAATACACTGTAAGATCAATGTCAAAGAACTGACCCAGCCTCCAGAACTACTGCAGACAGACACGCAGCCACTGAAAGGTGACTCAAACTGCTCAAACGTCACGGAAGCGAAAGTGTTACCTGCACATTTACGGCTCACTGCAAACTCTGTACAATATATTTCATCACGGCCACATTTTGAGACGGATGAAAGAAAGGCCCCGTGAGGTGCCCACTGCATGCCTGAAGAAACATCTTTTCAGATTAATTGAAAACCTGTTGAACAAAGTAGGACCGTATATGaaacaaatcttttatttttctctctgatTGGagttaaaaaatctttttttttgatatacAAGTCTTCTGCAgattttgtttgttcgtttattcattttatatatttttcatttgatttttgtttttgatttcctTCCCTCGGAATGCTGCAGGAAGAGCACTCATGTAGCCATGGGCAACAGGCTTTACTCTGTTACCAAGCAACACCGCCCTACTGTGTTACTCTATACAACTCTCAAAGCAAACAAGAGTGTaggaaagtgtgtgtgcgtgtgtgtgtgtatgtatgtacgtgtgcacgtatgtgtgcgtgtgtattaGAGATATGAGAGAAAGACAGTAAACGAGTCAGTTGGATGCCGAAGAGTCTCTTTTTGAGAGTTTGATGACATTTGCATTCGGGAAAAGATGAACTCCTGGCAGGTAGTAACGTGTTTAATTTGGCTTctttagaatatttatattatagctAAACTCATGCAtggtttaaaaaagtattactaTATGCTATCAGGCCAGAGAACAGTCTGTATATAAGAACATATTATTTGCATAGCTGCATCCTCTGTTTAAAACTGTGAATTGTACTCGTGAATGCAATCTTTTGACTCTGCGAACGCAGAACCTTTCTACtctctatttttttctacaaaaaaagaagacaaaagatgaaaagctttgcttctctgatgttatgactgtttttgcttgtttccGGGTCTTTGCTGGTCATTACCTCTGAGCTATGGGCTACATTCAGGTCGTTAATTTCTGTTTGCTAATGTACGTGTCCCTTAGACAGACTCCACAAGCCTAAAACCaacattttttccccccctttcGCAATTCTAGACGTCAGTGGCTCAGGATTCTAGAATTGGATAAAGTAAAACGGGAGAGAATTagaggttaaaataaaaaataaaaaaatcaattggtTCATTCTCGGCGGTGGAGCACAAAACGTCCCCTTTCCAcatgtcgtgtgtgtgtgttctcaatCGTCCACATTACAGACACATTGGTTTTAAACGCAGCCCTGCATATGTGCTCAGTGTTACAGTTAAGTTTGATTGTCACTTTTTTGAATCTTGTGGgatgtattttaattgaataGAATGTACTCATTCAATGGCTTGTTAATTGTAAATTTCAttagaacaaacacacactgcccACACACAGACAATACTCTTACGTCCGTGGTTGATGCTTTCTTACCAAAGCGACTCTCAAAATCACATCTGCCCATTGCAGTTACCTTTTTAACGATTATTTTTATGTAGAATGTTACACTTCACTGTGTTTCATCtcatgaggtgtgtgtgtgtgtgtgtgagtgagcgagcGAATGCGTGTTATCAAGGCCATCGGGGTTTCACTGTGGTTTTAAGGGCATGTCCCCCCTCTCTCCCCCACACGGCTATGCTGTATAAGGTGTAAGTTGCACTGCAACATTGAGACGGAACATATTGCTCTTTTTTCAaggttttctttcaaaaattcCCCTTCTGTATATTAAAACACCAGGAAGAGCCTGATATTTATTCACAGTATTATTCAAAGCTAACCCTCtttgctttcagaaatataaatacatatataaatatatataatacagattgtaaaatgttaaactaaTAAACTGAGTTCTCTGCACtctg

Function

GO: NA

KEGG:

id description
K17536 CNKSR2, CNK2, KSR2; connector enhancer of kinase suppressor of Ras 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52008 lncRNA upstream 7773 11463869 ~ 11465339 (+) True G35316
TU52017 lncRNA upstream 30701 11441539 ~ 11442411 (+) True G35322
TU52002 lncRNA upstream 58424 11414041 ~ 11414688 (+) True G35311
TU51998 lncRNA upstream 67351 11405528 ~ 11405761 (+) True G35309
TU51993 lncRNA upstream 85942 11384891 ~ 11387170 (+) False G35304
TU52055 lncRNA downstream 18256 11530518 ~ 11531244 (+) True G35350
TU52095 lncRNA downstream 137995 11650257 ~ 11652683 (+) False glra4b
TU52094 lncRNA downstream 138366 11650628 ~ 11652683 (+) False glra4b
TU52388 lncRNA downstream 194397 11706659 ~ 11706998 (+) True G35584
TU52389 lncRNA downstream 195269 11707531 ~ 11707773 (+) True G35585
XM_043238441.1 mRNA upstream 1988 11467720 ~ 11471124 (+) True si:dkey-237j10.2
XM_043239808.1 mRNA upstream 69829 11400449 ~ 11403283 (+) True uprt
XM_043238870.1 mRNA upstream 108172 11362066 ~ 11364940 (+) True iqcd
XM_043239527.1 mRNA upstream 142806 11324743 ~ 11330306 (+) False plp1b
XM_043238164.1 mRNA downstream 2147 11514409 ~ 11518903 (+) True apool
XM_043240588.1 mRNA downstream 92565 11604827 ~ 11609386 (+) True zgc:113208
XM_043239833.1 mRNA downstream 97508 11609770 ~ 11614726 (+) True nono
XM_043239834.1 mRNA downstream 97508 11609770 ~ 11614726 (+) False nono
XM_043239835.1 mRNA downstream 103330 11615592 ~ 11619068 (+) True casp22
XR_006251083.1 other upstream 410798 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 539949 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 742060 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1354986 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1673754 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 411966 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 736876 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 736876 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1001814 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1191109 12703371 ~ 12705241 (+) False iscu

Expression Profile