RNA id: XM_043240215.1


Basic Information

Item Value
RNA id XM_043240215.1
length 2807
RNA type mRNA
GC content 0.46
exon number 8
gene id ppm1f
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1721233 ~ 1732137 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCCGTCACAGCGACTTCCGCAGACGGATTGGCTTTTGTTGTGTAGTGACCGAAAGGGCGTGCGTTCAGTGCGCGAGCGCTTCAAACCGCACTCGGCAGGGTAAAAAGGGAGTGTTGGCGCATAAAGCGAAGCCAACCATCCGTAAGaTTCGTACCTGAAGTTTCCTTTCCACAAAAGGTTTCAAAACCACGCTCAGAATGAGTTGCACGGAGCAGGGCGACGCTGGGAAGTTTCTAGAGAGGTTTCTGGACGAGTTTCCAGACCCGCTTGGCTCAGAGGACCCGCTTCCCGTCAGTCCACTTAGCCGCAAAGTCACTATGCAGGAGGTGAAGGGAGAGAGTCTGGATCTGGGCCTGCGACTGCTCTCAGCCAGaaaagccCCATCCTGGCTGGGTGCGGAGATATGCAATGCTGCTGTCACTGAATTGCTTAAAGATGACCTTTCTCCTCACCACTGCCCCAAAGATCCTGAACAGCAACCGGAGGATGAACAGGAAGTCGTTTTGTTACAGTCTGAGCCATTGCAGCGcctctttattaataaattgagAGAGGTGTGTTTGGCCTGGCAGAAACAGCTGCCCAGTCCTGGGTCCTCATCATCTCGGACACACAGCTGCTCCGTGCACGCCATTCGAAACACTCGCAGGAAGATGGAGGACCGTCACATCATCCTGAGAGAGTTCAACCAGCTACTGGGACTGGAGGATGGTGTAGATCGAGAGTATTACGCTGTGTTTGATGGACATGGAGGGGTGGACGCTGCCACATACTCTGCCACTCACCTGCATGTCATACTGAGCCAGCAGGAGGCGCTAAAGAGCGATGCTGCCACAGCCTTCAAAAGCACCTTCACACAAACAGATGACATGTTCAAAGTCAAAGCTAAGAGAGAGCGTCTGCGCAGCGGCAGCACTGGTGTGGCAGTCTTACTGACCTCCGATCGCCTGACCGTCTCCTGGCTGGGTGACTCTCAAGCTATGCTGGTTCGACAGGGAGAGCCGGTGACCCTGATGGACCCACACAAACCTGAGAGAGAGGATGAGAAGAAAAGAATCGAGGATCTGGGTGGATGCATCGCTTTCATGGGTTGCTGGCGGGTAAATGGGACCTACGCCGTTTCTAGAGCAATAGGTGATTTTGATCAGAAGCCGTACGTCTCTAACGAAGCTGATTGCTCCTCGATACATCTGAATGGAGATGAAGATTACATTCTGCTCGCTTGTGACGGCTTCTTTGACGTGGTTCGGTCTGGGGACGTCCCGGGGCTAGTCCTGGAGGCTCTGAGGGAGACCGGGGGCCCGGGGGACGATGTGGCCCAGTCTCTGGTGGCCCATGCGAAAGCTGCTGGATCCAGTGATAACATCACAGTTCTCCTGGTGTTCCTCAAGGATCCGCAGCAACTTCTGACCTCCGAGATGAGCTCCAGAGGTCCTGGCGGAGCTACGGCTGCAGGGATGTGAAAGAATACTCAATTATAGAAGCAAATCAGAAGACCGGTAGCAACCCATGGTCTTTTTCAGCATCTGGAATGATAGTTTTAAAGAGTTGTTGCAATTGAAAAGTATATGCGATTGCTGAGGTCATCCAAAACGAGTCCAGTCATGCGTTCGGAAGAAAGCATCGAACGCAGGTAAAAGGCGTTTCCTCgcttttttttccatgaatgtCTGATGCCTGGTCATTTAACTCTTTCCGTTGCTGCATTTGAACTTgccttcatttttaaacatgtttccATTTTTAACCATTTGCCTTGTTTTTACCagcttatatttacatttactggTGCTTGAAGGTATAGTACACCtaaaaataattctgtcatcaattagtcaccctcgtgtcattccacATGGAACttaaaggaagatattttgttgGTAGAGGAATGTACAATATTTCCATTGAATGGACAAAATAGTGCAACGGAAGTCAATAAGAACCAAATGGGTTTAAATgtacagttcacccaaaaataaaaactcatttactTGCATCACCCTCaggtagttccaaatctgtatgaacacaaaggaagatgttttggggaaatatgttttagtttagGCTGTTTtagtcaccattgacttccatactatggggaaaaaaaatactatggaagtcattgGTGACCTAAAACAGCCCGatcacaaactttcttcaaaatatcttcctttgtgttcggcagaacaaaaacattcatacagATTTAGAACATACagatttttgggagaactatttctttaattaacaACACGCTTCAAAACATGCTTCacatttaacagaaaacaagaaatgcatgcaggtttgaaacaacacaagggtgaggaattaatgacagaatgtgcttttttttggatgggctatttctttaatatctcatAAACGATGTAATACCTTAGAGATGCACGTAAGCAAACGTGATCATTTTTTCGGAGCATATTTTGATGGTTGCGCTCTCTATTTGATACGACTGTTACAGTGGAGAGAAAATCGATGTGAATAGTCTTAACACATACAGTATTGCGTGGCATTTCAGACCACACCGACTTCGATAATGGAATAATAACTGACCATAAGGCCTTCAGCTCAACAGACGTACTAATCCAGTGTTGTAGGTGGTTAGTATTTTCAAGactgttatttatttgacaaataagTATTTATGGCTCTACTGTACTGTGTAAACGCGTTCTTTTATGTGCCAAAACTGTATTTACAAGTCTGACTTTGCCAAGATCACCTTTCTGTTGCTCACGGCTTTTCACAAAGCAGTTTCCCGAAATATACAGTAAaccttta

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K17502 PPM1F, POPX2; protein phosphatase 1F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47992 lncRNA downstream 54327 1666698 ~ 1666906 (-) True G32572
TU47888 lncRNA downstream 113486 1606425 ~ 1607747 (-) True G32486
TU47861 lncRNA downstream 154084 1541226 ~ 1567149 (-) True G32462
TU47864 lncRNA downstream 181865 1537398 ~ 1539368 (-) True G32463
TU47832 lncRNA downstream 207921 1513045 ~ 1513312 (-) True G32440
TU48000 lncRNA upstream 27507 1759644 ~ 1759857 (-) True G32579
TU48002 lncRNA upstream 30341 1762478 ~ 1762829 (-) True G32581
TU48004 lncRNA upstream 31138 1763275 ~ 1763648 (-) True G32583
TU48007 lncRNA upstream 34461 1766598 ~ 1766880 (-) True G32586
TU48023 lncRNA upstream 62367 1794504 ~ 1796557 (-) True G32596
XM_043240297.1 mRNA downstream 3332 1696432 ~ 1717901 (-) True mapk1
XM_043240298.1 mRNA downstream 26947 1673024 ~ 1694286 (-) False ypel1
XM_043240299.1 mRNA downstream 27439 1673024 ~ 1693794 (-) True ypel1
XM_043240301.1 mRNA downstream 31236 1673024 ~ 1689997 (-) False ypel1
XM_043240226.1 mRNA downstream 118173 1597847 ~ 1603060 (-) True p2rx2
XM_043238199.1 mRNA upstream 962 1733099 ~ 1745696 (-) True top3b
XM_043240861.1 mRNA upstream 37299 1769436 ~ 1771792 (-) True sdf2l1
XM_043239640.1 mRNA upstream 48028 1780165 ~ 1785389 (-) True ube2l3b
XM_043238324.1 mRNA upstream 161643 1893780 ~ 1898590 (-) True LOC122344761
XM_043238158.1 mRNA upstream 287959 2020096 ~ 2022922 (-) True LOC122344636
TU47988 other downstream 27259 1674490 ~ 1693974 (-) False ypel1
XR_006250937.1 other downstream 366819 1342606 ~ 1354414 (-) False lrrc74b
XR_006251111.1 other downstream 385046 1322296 ~ 1336187 (-) False castor1
XR_006251110.1 other downstream 385049 1312606 ~ 1336184 (-) False castor1
TU48139 other upstream 234500 1966637 ~ 1967748 (-) False G32676
TU48140 other upstream 234500 1966637 ~ 1967748 (-) True G32676
TU48163 other upstream 287971 2020108 ~ 2022894 (-) False LOC122344636
TU48378 other upstream 764367 2496504 ~ 2554146 (-) True G32857
TU48396 other upstream 848411 2580548 ~ 2585426 (-) False snrnp27

Expression Profile