RNA id: XM_043240223.1


Basic Information

Item Value
RNA id XM_043240223.1
length 1698
RNA type mRNA
GC content 0.42
exon number 11
gene id usf1l
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8561395 ~ 8567078 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCAGACATTAAAATTCAGTAACAATGTGCGCATGTGCAGGAAAAGGAAATGAAGTCTGAATGTTTGCTGCTAACAACAAACGGTGAATGTTTAAGGACCCCGAAGCCTTGAGAACAGTTTACTTAATATGAAgaACCACAACAGTCCTGATCCTGAAGATTCTCCCATACTGCAAGACGGTGTTGCCGAAACCGCAGACGACCCACTGGCTATCACAGCCATCCAGTCTGCTGCCGCATTCTCCGCAGATCCACAAATTAAGTATCATCTTTTAAAAACGGAAGGAACAGGGGGCCAGGTGACATACCGAGTGATCCACTTGGCTGACGGGCAGGTAGAAGGGCAGGCGGATGGGGCTGCAGCGGTCAGCGTGGTGACTGGGTTTCCCACAGTAACTCAGGCAGCCACACCGCCTGTAACACAGGCCGTAATCTCTCAGTCTGAGAGTCTGGAGGGAGAGACGTCTGAGACTCAATATTACTATCCTGCCACCCTCTCTGACACAGCTGCCAGCACCATGGTCACCAATCTCCACACAGCTGATTCGGTACTATCTCAGACAACCTCGGCAGGTCAGCTCTACGTAATGATGTCACCTCAGGAAGTTCTGGCCACAACACAGCAGAGTAAGTCGGGAACACAGCGTGGTTCCAGGGATGACAAGCGGAGGGCTCAGCACAATGAAGtgGAACGCAGACGGAGGGACAAGATCAACAACTGGATTGTCCAGCTTTCCAAAACAATCCCTGACTGCAACATAGATGCAACCAAAAATGGTCAAAGTAAGGGTGGGATCTTGTCCAAAGCGTGTGACTATATCCAAGAGATGCGTCAGAGCAATGCACGGCTGGAGGAGGAACTCAATACTGTGGAAAGACTGAGGATGGACAATCAGCTTCTCAAACAAGAGATGGAGGAGTGGAAATCAAAGAATCAGATGATCAGAGCCCAGTTAAGACAGCATGGCATAGTGGCAGCATCAATGGACTCTCAGTGAAGAACTGCAGATCAACTATAACCTTCTCCTGCTGTGGTCTTGTCATTAATTCCATTTATCcatgtttgaaatgacatgtaAGTCGTTCTTACTGTGGACAGTCACACtcttttctttgtcttcttcACGGTCCACTTCGCAAATAGCCTTtgattgtttcatattttttccaGAGTGGTCTGTTATTGTAACTGCACTGAAATGATGTATAATTGTCAGATCTGTATATTTGTAGATCTGTATTTAAAGAACGATTATACTTTAAATGACTACTATGATGGtgtttcaaatgtgttttttttttttttttttttttcacaatttggtcacctttattgcatttttaaagcaaaatgttattgttttatgtcTATTCGGTCAAAGGTTTTGTCGAAACAATTTCTTACGCAATGCCTTGACAATCAACTTAAGCCAAAACACCAGCTTTAAACATTCGGTCATTTATATTGCAGTTCTGATATGTAAACATCCCAGTAAATTGTACAAAATACACAATGTCCTTACACAATATTGTTTGATCAAATCTTTATTGAATTTTGtgacatttcaaatataaacactggTAGATTTGTTCAGTCATCAATCACAAATGCGCAGATTTAGTCAAACTGGATGAGactttaaatactgtatatcgCAAATTATAGTTACTAATAAAGCAGTTGTTGTACTAAATTGA

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50668 lncRNA downstream 86215 8474979 ~ 8475180 (-) True G34401
TU50667 lncRNA downstream 88046 8472323 ~ 8473349 (-) True G34400
TU50663 lncRNA downstream 93536 8467620 ~ 8467859 (-) True G34396
TU50662 lncRNA downstream 96009 8464788 ~ 8465386 (-) True G34395
TU50659 lncRNA downstream 97792 8463373 ~ 8463603 (-) True G34392
XR_006250971.1 lncRNA upstream 107249 8674229 ~ 8677583 (-) True LOC122345093
TU50889 lncRNA upstream 107569 8674549 ~ 8676706 (-) False LOC122345093
TU50957 lncRNA upstream 322006 8888986 ~ 8890348 (-) True G34573
TU50958 lncRNA upstream 338427 8905407 ~ 8905624 (-) True G34574
TU50959 lncRNA upstream 349552 8916532 ~ 8916931 (-) True G34575
XM_043238509.1 mRNA downstream 11862 8546581 ~ 8549533 (-) True f11r.2
XM_043239108.1 mRNA downstream 18010 8537692 ~ 8543385 (-) True f11r.1
XM_043239107.1 mRNA downstream 18012 8537692 ~ 8543383 (-) False f11r.1
XM_043239106.1 mRNA downstream 24368 8511602 ~ 8537027 (-) True ubash3ba
XM_043240774.1 mRNA downstream 129809 8430591 ~ 8431586 (-) False timm8b
XM_043240225.1 mRNA upstream 102 8567082 ~ 8568987 (-) True thy1
XM_043238437.1 mRNA upstream 2869 8569849 ~ 8574583 (-) False si:ch211-215c18.3
XM_043238435.1 mRNA upstream 2869 8569849 ~ 8574583 (-) True si:ch211-215c18.3
XM_043238436.1 mRNA upstream 2869 8569849 ~ 8574557 (-) False si:ch211-215c18.3
XM_043238434.1 mRNA upstream 2869 8569849 ~ 8574556 (-) False si:ch211-215c18.3
TU50638 other downstream 129820 8429700 ~ 8431575 (-) True timm8b
TU50633 other downstream 146589 8411882 ~ 8414806 (-) True G34372
TU50440 other downstream 839932 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50081 other downstream 1164242 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 1438931 7122339 ~ 7122464 (-) True LOC122346223
TU50888 other upstream 107569 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 362490 8929470 ~ 8930053 (-) True G34580
TU51091 other upstream 648528 9215508 ~ 9220507 (-) False vamp5
TU51236 other upstream 770848 9337828 ~ 9402623 (-) True G34789
XR_006251099.1 other upstream 1758135 10325115 ~ 10335342 (-) False si:dkey-96l17.6

Expression Profile