RNA id: XM_043240229.1


Basic Information

Item Value
RNA id XM_043240229.1
length 2245
RNA type mRNA
GC content 0.47
exon number 6
gene id mxd1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2555476 ~ 2579803 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTACAGTAACATGACAGCAGCTAGCAAACATCTCATCTGCCTGCCTCAACGACGTTATGGTTTCGCTAGCTGCGTgttttttctcctgtttttgaTTCCTTTTTCCTCGGTTGCACGCAGCTTCAGCTTAGCATGTGCGGCTCGAGCTGTTCAATAAATAGCCAGATCGTCTGTCACGCTTGAAATATCGAAACCAGCGATTGTTTGGACGTTTGGAGGccgtgtgttttattttaaagcctaTTTTCAACGCGTTTTTTTTCCAGCGACCAATCgagattttttatttcatttaaatttttttattttttttttattgcacaacACTATTGCCTTCCACCTCGCTGGACGGGCATATCAAAATTgacgggttttttttttattaaaccaagAAGGAATCGGGGTtgaatgctgtttgttttccaACCAGCAACCGACACAGCAGCACCAAAGCTCaaattattatcaaaaataatcaCCAGCTgcttaaatatactttttttgtgtgtcaagCGGTGCAATCTGGCAACCCGTGCCCTCCTCACATCGATCTGACTGAGCTGTCAATCCAGTATTTTtgcctattttttttcctcctgctcTCTAGTTAACAGCGTTTGCTGTCAGTACCAGAGCCTAAAATTGACCAAGTGCAGAACTAAAGCCGTGAGCTCTTATCTGTTTGACAGCTCGTCTATAAAAGTCTTCACCACTTACATGCTTTCAGGAAGGGTTGCCAGATCGTGCCAACCTGGACGGGTTTTCTTGCTCGTTTCGCGTTAACGTGCAAAATCTCGTTTAACATGAACAGGACTAGTTAACTAGTTACTTCTCGGCAGCTGAGGGACGTTTTTTATTCGGTTTTATCATCCAGCTCTTTGGAAACCAGcgtgtttgttattattattattattattttttactctcCGTTGTTTTTGTACACGTTCctgttttttctcaaataccAGCCCCGCATCTAAACGTCTCCCTCGCTGCCTTATGCAAGACAAAAACTGACTGGATTTTTCTGGAGGAGGAAGAAGCGTGAAGGAACGAAAGGCTGccgcttgttttttttccccgccGCCGCCGTTGTTTGTTTCTGACCCGGATTGTCGTTTTTTTAAAATCGCTTTTCGTTGCTTAAAATGACGGCTATCGAGAAACTGCAGATGCTGATCGAAGCGGCTGAATATCTCGACCGAAGAGAAAGAGAAGCGGAGCACGGCTATGCCTCCATGTTACCCTTCACCAGCAACAAAGAGAGGGACGGCTTGAAGAGGAAAATCAAAAGCAAGAAGAACTGCAGCAGCAGATCCACACACAACGAGATGGAGAAGAACAGGAGGGCACATTTACGGCTGTGTTTGGAGCGCTTAAAATCCCTCGTGCCCTTAGGACCAGACTCGAACCGCCACACAACCCTCAGCCTCCTTATGAGGGCCAAGGAACACATCAAGagGTTGGAGGACAGCGAGAGGAAGGCCCAGCACACTATAGACCAGCTGCAGAGAGAACAGAGACACCTGCGCAGACGCCTGGAGCAGCTCGGGGTGGAGCGCATACGCATGGACAGCATGGGCTCCACCATCTCTTCAGACAAGTCTGACTCCGACCAAGAAGAGGTGGATGTTGACGTGGAAGGCACAGACTATCTTCTGGGAGACCTGGAGTGGAGCATGAGCAGCGTGAGCGACTCGGACGAGCGGGGAAGTTTGCGCAGCAGCTGCAGCGATGAAGGCTACTCCAGCGCTAGTCTCCGTCGACTCGCTAACTCTCAGGACAAGAACCCCGCGCTGGCCTGCAGTCTATAAGAGCACAGAGCGCCCGTTCATCTCCACCGCTCCACACACAGCTCCTCCTCTCATACTTGAACGCTGTTCTGACCCACGAGCTCGAGGGAAGCCGTCCGCTGACCAGACCTCACTGACCTCACCGCCTTCGTCCGATCAGATCGTCCCGGCCGCTTGCCTTCGACCCTTAAAGACCCGATGAAGAACGTGTCTCTCAGAAGCGTCTGGACACCTGCTTTACGCACGAGTCTGAACAGAAAGCTCTCTTCTGCTCACAAAGCCTGTGCTTTTGAACCGAGATGCAGCAAAAGCAGTCACATTCTGAAATACttctactatttaaaataaaatatttaaatatttaaaatttcatttaattcaaagctgaatattttttgcatcattactccactcccatgatccttcagaaatcatcttttttatttaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251082.1 lncRNA downstream 119777 2433286 ~ 2435700 (-) True LOC122346060
TU48232 lncRNA downstream 130665 2422985 ~ 2424812 (-) True G32740
XR_006250936.1 lncRNA downstream 170776 2383907 ~ 2384701 (-) True LOC122344845
XR_006250939.1 lncRNA downstream 176082 2377967 ~ 2379395 (-) True LOC122344860
TU48218 lncRNA downstream 179814 2374002 ~ 2375663 (-) True G32727
TU48406 lncRNA upstream 72644 2652444 ~ 2728807 (-) True G32870
TU48421 lncRNA upstream 170159 2749959 ~ 2797599 (-) True G32881
TU48423 lncRNA upstream 185483 2765283 ~ 2766771 (-) True G32882
TU48425 lncRNA upstream 187979 2767779 ~ 2774190 (-) True G32883
TU48427 lncRNA upstream 189401 2769201 ~ 2770371 (-) True G32884
XM_043240699.1 mRNA downstream 11903 2536025 ~ 2543574 (-) True zgc:65851
XM_043239484.1 mRNA downstream 28140 2524559 ~ 2527337 (-) True purba
XM_043240773.1 mRNA downstream 137424 2385151 ~ 2418053 (-) True LOC122346100
XM_043240213.1 mRNA downstream 456296 2090152 ~ 2099181 (-) True LOC122345768
XM_043240718.1 mRNA downstream 465321 2087785 ~ 2090156 (-) True LOC122346063
XM_043238138.1 mRNA upstream 748 2580548 ~ 2585452 (-) False snrnp27
XM_043238136.1 mRNA upstream 748 2580548 ~ 2585441 (-) True snrnp27
XM_043238137.1 mRNA upstream 748 2580548 ~ 2585438 (-) False snrnp27
XM_043239244.1 mRNA upstream 6787 2586587 ~ 2605917 (-) True add2
XM_043239248.1 mRNA upstream 6787 2586587 ~ 2605916 (-) False add2
TU48378 other downstream 1331 2496504 ~ 2554146 (-) True G32857
TU48163 other downstream 532583 2020108 ~ 2022894 (-) False LOC122344636
TU48139 other downstream 587729 1966637 ~ 1967748 (-) False G32676
TU48140 other downstream 587729 1966637 ~ 1967748 (-) True G32676
TU47988 other downstream 861503 1674490 ~ 1693974 (-) False ypel1
TU48396 other upstream 748 2580548 ~ 2585426 (-) False snrnp27
XR_006250982.1 other upstream 7753 2587553 ~ 2605915 (-) False add2
TU48454 other upstream 355943 2935743 ~ 3012819 (-) False LOC122344624
TU48464 other upstream 371662 2951462 ~ 2960177 (-) True G32908
TU48805 other upstream 1305625 3885425 ~ 3894475 (-) False piwil2

Expression Profile