RNA id: XM_043240264.1


Basic Information

Item Value
RNA id XM_043240264.1
length 6011
RNA type mRNA
GC content 0.38
exon number 17
gene id LOC122345796
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 25303475 ~ 25446662 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGGTAACAGTAGGCAGGCAGTGAAGCACGCAGGCTGCCGACTAGCCAGTGAGTCCAGGTCTGGGGGTCAGGAACCGGTCTGAGCACAGAATGGAGAGTCTGTGCGTGTACTAGGTTTTAGGAATGCTTTGGAGGATGTACAAGGAAGACACAAGGAGGCTTCAACAGATATAACCAGGGAATGTCAAGACATGTTTCAGGCCATAGTAAGTGCAAATAAAGATGTCAGATTGTGTTGATGTTGAAGAAAAGCCACCTGCCCCCCCTTTAAGAATGAACAGTAGTTCCCGTGACCCTTCTTCAGTGCACAGTTCAAAACCACTTCCAATGGCTCCAGAGGAGAAGAACAAGAAAGCCCGCCTCAGGTCCATCTTTCCAGGGGGAGACAAAAccaataaaaagaaagagaaggagcgTCCAGAGATATCCCTGCCCTCTGATTTTGAGCACACCATCCATGTAGGCTTTGACGCAGTAACGGGGGAATTTACTGGTATTCCAGAGCAGTGGGCTCGGTTATTGCAAACGTCTAATATTACTAAGTTGGAACAGAAGAAAAACCCTCAGGCTGTAATAGATGTTCTCAAGTTCTACGACTCCAAAGAGACAGTGAACAACCAGAAATACATGAGCTTCACATCAGGAGATAAATCTGCTCATGGTTACATTGCAGCCAATACTctgAATCGCCTTCTGTCTTCCGGGCCACCTGTCAGCCTTAGAACCTGCAGCGCATTATTTGACAAGCAAGGGGGTAAGACAACTTCTGAATCTCCTATTGCACCTCCGGTGTCtgaagaagaagatgaggaagaggatgacgaagaggaagaagaagaagatgatgatgatgatgatgaggttCCACCTATCATCGCCCCACGACCTGAGCACACCAAATCTATCTTCACTCGCTCTGTTATTGACTCAGCTGCACCTCCTGCTTCTGTCAAAGAGGTCACAACCCCTCCAGAGTCTCAAGTACAGCCAGAGAACACATCCAGTATGCTGTACCGTCACACTGACCGACAGAGGAAGAAGTCCAAAATGACAGATGAGGAAATACTGGAAAAACTCAGAAGCATTGTTAGCGTTGGTGATCCAAAGAAGAAATACACACGCTTTGAGAAAATAGGACAAGGggcATCTGGGACAGTATATACAGCTATCGACATTGCCACAGGACAGGAGGTGGCAATCAAACAGATGAATCTTCAGCAGCAGCCAAAGAAAGAGCTCATTATTAACGAGATCCTTGTGATGAGGGAAAACAAAAACCCCAATATAGTAAATTACCTGGACAGTTATCTAGTAGGAGACGAGTTGTGGGTGGTGATGGAATATTTGGCAGGTGGTTCACTTACTGATGTGGTAACAGAGACATGCATGGATGAGGGACAGATTGCTGCAGTGTGCAGAGAGTGTCTACAGGCTCTGGATTTTCTTCATTCTAATCAGGTGATTCATAGAGATATCAAGAGTGATAACATTCTGTTGGGCATGGACGGTTCAGTGAAACTGACGGATTTTGGGTTCTGTGCTCAGATCACACCTGAGCAGAACAAACGTAGCACCATGGTTGGAACACCCTACTGGATGGCCCCAGAGGTTGTAACGCGAAAAGCCTATGGTTCCAAAGTAGACATCTGGTCCCTTGGTATCATGGCTATTGAAATGGTGGAGGGGGAGCCACCATACCTGAATGAGAACCCACTCAGGGCCCTATATTTAATTGCAACAAACGGAACTCCAGAACTACAAAATCCTGAGCGGCTATCCTCTGTGTTTCGAGACTTTCTGAACAGCTGTCTGGAGATGGATGTAGACCGGAGAGGGTCAGCTACAGAATTGTTGCAGTCCACCATCTCCGTGGGCTCCCTCGTCCCTTCGGCTCCGCATTGGTCTGTAGTCAACCATCCACTGCCTCAAGAATCCAATCCTTTGGCTATGCCTCATCCCTCCATCTCTCTGACTCTGTCAGGttcctccttccctccagctctacctcagtcctctgtcgctctggctccacccaCTCGTTCCTGAAACTTGCAAAGCCCCTTTCCAGCTTGACTCCGCTGATTGTAGCTGCCAAGGAAGCCATCAAGAATAGCAGCCGTTAAGATGTTCCCTCTACCCCCACACAGAAGCATACACattcagacacaaacacacacaaacatgtgcaCAGAGAGTGCAAgagcagtgtgtttgtgtgtgatagCACAATTAAACAGTATCTAAATTTGGACACAAACACTCTCAAAGGGTCCCTACCCTCAAACATGTTGTGATGTATGGAACtgccactccagtccatcagtatGTGTCCACCTCTACTCACCTGGAAAGAAAATAGGAACAACTGAAAAACAACTCCTGTGTTTCTTCTGGAATCAAAAATGATGTGTATTACAGTAGAACTCCAAAATTATCCAGTTTATTGTCTTACTTAATATATTCTGAACTGCCTTGGATTACTAGCACCCTTCTTTGGGTTTTACAGGGTTTTTCCTGTTCCTAAAGATGTGTACCTCCAAATCTCGGGATCTCCCCAAAACATCTGCATGACCGCAGCTATTCACAGCAATCATTTTCTTTATACAAGGTGTGTGCTCAAAGTCAGAGAGcagtcagagagagaaaaaatactGAAAGAGTGAGAAATATAAGAACTAAAATGAATCTCAGAGGAAAGAAAAGTGCCCAGGTCACATTTCATCCAAAATCTCATCACATTTCTTGACTATTGAGATTTTACAATTATTAGAAGGCTATAGTCCATGCTCTCTCtgtaattttttcaaaatgaattcacagacttagtttttaaatgtaatatctcTGCCATAGGGCCCAGCATTTAGTCATTAATACTACAACACATAGGTCTAAACTATGCATTTTAAGAACAAATGCTAAATGCTGAAAACCAAGCCATGAGGAGCCAAATGTATAGTGGGCTAATGTGCTACTTCCTGGGCATTATGGAGTAGGAAAACCCTGCTGGTGTTTTGATCTGCTCATCACACATTATCagaaaacattgcaataaattatttcagaatgaaataaaatgtttgcatgATGAAGGGCCATTCACATAAGACTtcttggggacacttaatttctagcgagtATTGTCAATTTGATTTGTctttcattaataaatcattagaaaaattgtataatatgaTTAACTAATCATTAGTTAATAGAGATATTCACCTATCTAGACATATAAGATCATGTGCTTGTTAATGTTCACTAATCAATTTAacagttattgttttattttgtaaattgaaatgcttaaaatgtcattaaaccttttatttatatgataatgtttttttttaattattttgatagaTGGTTTACAATGATTAAAGGCTTCATTAATAAAttctttacaaatattataatatttaatgcattttaaatatttacaaatgattttaactgaaatatttgCAGGCTTTTGGTCTTTGTTgtatagaaatcttttgtagaCTATTTGCACATtgtatttattgaatatttgttAACCAAATTTGGAAAGTATTCAtcaattgtaaatgtttatatcCATTTGCTAATCATTAGTGCCTTCATTCTAAAGTGGAGGATATTCATCTTTTGTAAAACATCATAAacatattcatgtttatttatttatttatctatctatctatctatctatctatctatctatctatctatctatttatttatttatttatttatttatttatttatttatttatttatatttttgtctttattgtatCTGGACATTTACCCAATAACcaacccataccaccaaacctgtctctAACCTAAACCTGTTAATTGTTAGGTAATGTTTAATACAGTTATTAGTGAATATTAACAAGCACATTACTTCACATTTCTAGATATGtgaatatgtataaaatacagattttgtaAGTATTAGATAATGtttgttaatgatttattattgaaaatCATTGTAAATCATTGTACTCCCATGTGCACATTGTTGAGCAagtcacattttataaatgcttaCACGTAACCAGATAACGGGAAAAAGGTGTGGTTTAATGACACTTCTTGCCCCCAGAAGAAAAAAGATTACAATAACACAACAATGTATGGTATATATTTGTCattgaacataaatgttttctgtctAACACATTGTGTTACAAACAGTTCTGATCCATTCAATTGCCCTCTGTTTGGCTGCTTTCAAACTATAGTTTGCATCTTGTGTGAATGGTCCCTAAGAGAACAGTTGCAAATCCCTCTTTCACTTGTTAACACTCTTTAGTTTCACTGATTTCCAGTTTGGAACAAACATCAATAGGGGTGCTACTTTTGATGCCTTTTTCAGAAACAGTCACAAGTTAAAAGTGTTTGATTTTTGCTGAGGATACCTTAATTCTCACTTggtttaacaatatatatttatacagtaaaaaagtaGAAGTTCTAAGTGTATGCCCTAGTAGAGGATGTAGGTGTTTAATAGATTGTCAACTTGATATCTTTCTTTACAAATGAGTGTTTATGTGAGAGTTGTGCATAGATATTATAACCTCAGCCTGCTTTTAGTCTGTCTCTCTAATCACTGTGAACAATTCAGGATAGTACACCCAGACTACTACACCAGATAGATGAGGTAGATGTAGTTAGCAACAACCATAGACATCTAAAGACATGGACAGCAATATCTAAATAGTGCTACTGCTTTCATGCATACTGTAATAAATTTTACAACCCCACTTACAGTAAGTATCAAAATGATAAATGGGAGTTCCATTTTATTGTAGCAGCCAGTTTCATGCATGACATAACTTAATTACTTTCCTTGACCTTTGATAAGTTAGCCTTAAAAAAATTTGAGGATGATAACCAatgtatgttgttgttttgtttggtttttttttgttttttttgttttttttaatgaaaaccagTAATATTCAGGCTGCTCTTtgatatgtgtttttaaatattgtgcattCGAGTTCCAAGAAAATACTGTCTATGATCAAATCTATGATGGACATGTTGATGCATATTTAACAGATAGCAGTGTCTTGTGCCTGTAACAGAGACTGCAGGACCATTCAGCAGGCTAAAATAACTATCATAAACAGTTACTGCAGCCTACCTATATTGCAGCCTATCTCTCTGCATTGGAGCAGATGCAAGGAGGAGcacaatgcaaatttatttatgGCCCATGGACCCTTCATATTTAATCAGAGCTTGGACACGAAGTGGACTAAGagcacataaaaacataaaaaaaattaaagcgcCATAATTGTGGAAAGCGCAACTCCGGGATTCCTCTTGTCTCTTGTAAACTCCCTATTTCTTCTGAACGTGTGAACCCTGGTACATGTGCTGTAACAAAATTCCTCTATTGGTGTCTAATATGGGAATGAAACAAAACTGTACATGCTTACAAtgtgttctttttaatttattataattatgagtTTTGAGAACAGCTTGATTTATCTCAGGCAAAAAAGTACACTATAATGTACTAAAAGTGCTCTAAAATTATTCTTTAGTacttactaaaaataaatttaagatCAGTAAActcatcttttaaaaaatgcatttagtcaCCACTTAAATGTACTACTGTATGAAAGATGGTTCAGGTGtaatactaaaaacatttttttaaaaaaagacaaagtatgttaaaagtgctatgTTAGGTCATATTCATGTATGGTGATCATACGTGCCATTTTTTCGGGACACTGTATTGTATTTccatattgcctaaaatataggttttggctttgtttgcgtgTGCACACCGATGTATGACATCAGTCCCTTATGCTTTCTAAATGCTCTGTATTTTGAATCAAAACAATATACAAATTCTGACCAGgactcaaaatagcacagtttaGTACACTGGTGATTTTAAGTTTACTAAAGAAcagtttgtttgtaaaaaaaaaagtaaaaacaatgtGAAAATATGC

Function

GO: NA

KEGG:

id description
K05733 PAK3, MRX30; p21-activated kinase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58379 lncRNA downstream 3559 25299523 ~ 25299916 (-) True G39458
TU58377 lncRNA downstream 4246 25297876 ~ 25299229 (-) True G39456
TU58318 lncRNA downstream 127126 25175308 ~ 25176349 (-) True G39401
TU58301 lncRNA downstream 251957 25051181 ~ 25051518 (-) True G39384
TU58290 lncRNA downstream 283984 25019249 ~ 25019491 (-) True G39377
TU58391 lncRNA upstream 6851 25453512 ~ 25453834 (-) True G39470
TU58411 lncRNA upstream 82222 25528883 ~ 25529111 (-) True G39490
TU58424 lncRNA upstream 110635 25557296 ~ 25557522 (-) True G39503
TU58427 lncRNA upstream 112214 25558875 ~ 25559218 (-) True G39506
TU58435 lncRNA upstream 135678 25582339 ~ 25583014 (-) True G39514
XM_043239176.1 mRNA downstream 40347 25231235 ~ 25263128 (-) False zfpl1
XM_043239175.1 mRNA downstream 40351 25231235 ~ 25263124 (-) True zfpl1
XM_043240627.1 mRNA downstream 400186 24814609 ~ 24903289 (-) False LOC122346005
XM_043240626.1 mRNA downstream 400186 24814609 ~ 24903289 (-) True LOC122346005
XM_043240635.1 mRNA downstream 520827 24759478 ~ 24782648 (-) False taf6
XM_043240268.1 mRNA upstream 23991 25470652 ~ 25523837 (-) True LOC122345798
XM_043238566.1 mRNA upstream 116378 25563039 ~ 25568614 (-) False LOC122344921
XM_043240061.1 mRNA upstream 171450 25618111 ~ 25651008 (-) True hip1rb
XM_043240553.1 mRNA upstream 208846 25655507 ~ 25708679 (-) False kntc1
XM_043240554.1 mRNA upstream 208846 25655507 ~ 25708679 (-) False kntc1
TU58333 other downstream 21189 25281886 ~ 25282286 (-) True G39413
unassigned_transcript_970 other downstream 308243 24995162 ~ 24995232 (-) True trnag-gcc_23
unassigned_transcript_967 other downstream 311380 24992025 ~ 24992095 (-) True trnag-gcc_22
unassigned_transcript_964 other downstream 370497 24932906 ~ 24932978 (-) True trnak-cuu_7
unassigned_transcript_963 other downstream 376424 24926980 ~ 24927051 (-) True trnak-cuu_6
TU58432 other upstream 115313 25561974 ~ 25568686 (-) True LOC122344921
unassigned_transcript_987 other upstream 431010 25877671 ~ 25877755 (-) True trnal-cag_26
unassigned_transcript_988 other upstream 440697 25887358 ~ 25887441 (-) True trnal-cag_27
unassigned_transcript_989 other upstream 441853 25888514 ~ 25888596 (-) True trnal-aag_30
unassigned_transcript_990 other upstream 443767 25890428 ~ 25890510 (-) True trnal-cag_28

Expression Profile