RNA id: XM_043240268.1


Basic Information

Item Value
RNA id XM_043240268.1
length 3902
RNA type mRNA
GC content 0.38
exon number 7
gene id LOC122345798
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 25470652 ~ 25523837 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGGTGTGCCGGTAAGGAAGGCATCGCAGTCAGAGCAGCAGCTGAAGCGGCAGACAAAGACACGGAGCTCAGCGCGATCCTGCAGCATCCAcgcccacccacacacactcacacagcagCATTACAAGCTCACTGTACCACTGaccCATAATTCCTCAGTACAAGACCTTCACCACCACTATGGATGCCCCCTCTGAACATGTTGCCATGGAGCTGGACTTCGGCCATTTTGATGAACGGGACAAGACGTCTCGTACCCCACGAGGTGGACGTGCCAATGGTCTCCCCAGTCCCACCCACAGCGCTCACTGCAGTTTTTACCGTACACGCACCCTCCAGGCACTGACCAGCGAGAAAAAGGCTAAGAAGGTCCGATTTTACCGCAATGGTGACCGCTACTTCAAGGGCATTGTGTATGCAGTGGCCAGTGACCGTTTCCGCACATTTGATGCTCTACTGGCTGACTTAACCCGCTCTCTGTCTGATCATATCAATCTGCCACAAGGGGTCAGATACATTTTTACCATCGATGGAACAAGGAAGATTAGCACAATGGATGAGCTAGAGGAAGGTGAGAGCTATGTTTGTGCATCTGAGAACTACTACAAGAAAGTAGACtacactaaaaatgtaaaccCCAACTGGTCAGTGAATGTGAAAGCTTCAGCCAGCCAGAAGAACATGCTAGCTAACCGCACAGCTAGCGAGCCGAGGGAGAACAAGGAGTTTGTGCGACCGGAGTTGGTGACTGTGATGAGGAGCGGAGTGAAGCCACGGAAGGCTGTTCGTGTACTGCTCAATAAGAAGACAGCACACTCTTTTGAGCAGGTGCTCACCGACATCACAGAGGCCATTAAACTCGAAAGCGGAGCAGTGAAAAGGATCTATACACTGGATGGCAAACAGgtgaCCTGCTTGCAAGATTTTTTtggtgatgatgatgttttCATTGCCTGTGGACCAGAAAAATTTCGCTATGCACAGGATGACTTCTCCCTGGATGAAAACGAGTGTCGCGTTATGAAGGCCCCCAAAGGACAGAGGGGCTCTACTAAGAGTCCCGGTCCCGTTCGACGCTGCAAGTCACCGGCTGATTCCACTAATGGAACAGGCTCCAGTAGTCAGCTCTCTACTCCCATCTCTAAGCAATCTCCCATCTCGACCCCAACTAGCCCTGGCAACACTCGCAAACAGAAGGATTTATACTTGCCTTTGTCTCTGGAAGATGATGATTCACAGGGGGAGTCCATGTAGACTCTCCGTTTCCTGTATGTCAGTCAACATGCCAGTCACAAAGGTATATCTGGTGCTATCTGTCttgaaaacatcaaaatcacCACCCTAGTGACCAGGGTGAATGCACGCATCACCTTTGCTGCCCCTTGGCCATAAGGCTTTAGACCTCGAGGCTTTGCAGCGATGGTCAGTGCACTATTTGCTGCTTGAGAATTTGTCAcattcattttcagtgttttgataaTAGATTTTTAGTGACTGATGAAAAGTAGTATATGCAGGGCATATATTGCAGTTTGTATTGTAACAACAAACTCCTAAATTTGTACACATAGTCTGCTGttgaaattcattttatatgtatgaaaAATTTGAGCATACAGCAGGTCGGTTTAGCTGTTTAAACattcaaccttaatttttttagaccaataatttagactttttcatattgccttttttaaaaGCTTGGTCTTATGAATTCCAAGCAGCAAATAGTAATTTTTACAATGGTGTGATTGTCTGacttgtacaaaaacaaaaaagaacaaaaaaaaaagccaacgTTAACAATTTTCACcattaacaatttttattattctctttttgtaaccctctctctttcacttGCTCTCTCTGTGCAATGGTTTAGTGTGTTTTAAAGCCATTAAGGTTGAAATAGAACCCACAGAAATATTCATATCGTCATATCACTGTAAATAATGTGTACAGCCTACTCTACTCCATTAACACCATTAAAACGTAAACATAATCTTAAATGCTCATAGCTCTGAAGGTAATCATTGCAAATTGAGAGGAGGGGCCAAAAGCCATTTAATAAGGTCcttttactttgaaaataaataaaaattaggtAATTAGGTAagccagttctcactattaaagctttaattcaccccccaaaaaatgcctgtgttttactcacctttgaagtatatgtgaaatatatgtgactttcttctttcagaaaaatCCAGTCTGAGTTATATTTGtatgataaatattaatattttaaacataatacacatttttgtctTACTTCAGCAGCAACACAGGTATACATAAAAacttcttgtagcttcataaagtGAAGTTTAAACAATTGATGttacatggactattttaatgatgtccttactaaATTTGGGTGTGGCCTAATATGTGGtaattgcattgctgtctatggagggtcagaaagctctctgatttgatgaaaaataaaattattttctgttgtgAAGATGAGGTGCATAAAGGTGAGTAAAAGGTGCAacaacatgagaaaaaaatattttggggtgaactaaccttttaatagttagttaatagcaagaattggaccttaaaataacgTGACCAcaagcatatacattttttttaagttgtttttttatgtaaaaaaataccttTAGTTAATAACAGCAGATTTATTGTCTGCTATTTTTTGAAGTGATTTAAGGAAATAGAAAAATGGAAACCAGTATGACTTTGTTtctaaaatagcaaatataataaaaggttGTCCATTTAATACATGCTTCTTCTGAAGACATATCATTGACCAGGATTTACCAAAATTTCTTATTTACTAAAAGCCTTTCTCTGTGGTACAGCTTTTTTAATGGCATCAAAAAAGAGGTTGCCAGGTTTTATTCAATTGGCTGTCAATTGGTGTTATAACCAATTGTGACATCAAATAAGCAGGGAAGGgactggtttatttttattttattttcaaacaaagcTATTACAAGTCATATGATCCACATTTATGGTGCTGATTTGAAGCTCcaatgttttttaacaaaagagTAGCATGAACATTCTTCTAATTTGTCCAAGATAAGGGAAAAAAGGATGAATTTGAAAACACCTTGTAAGGTAGAGTGTCATTTTTTCAGAAAGCCAAAGTTATGTTGAAAAGAGGGAAGCTGAAAACTAATATCTTCACTCCCCATTGGTTATGTACTTACTGAACTTTCTCATTCATTGCTTTCATTTAAAGATAAACAGAATATCACACCtgaacatttacatatttaaaaaaatgactatatatGATAAAAGTACTCAATGGATATCAAAATTCATAATTTCTCAATTACATTACAGTGATCTCTGCAAGTATTGTGATATCTGTTGATCATCTCTTTGACAGACCTAGCACAAtgaaactacacacacacaatttccaTTCTCTTAATTTCCActgaatattcatattcatattctatatttttcacCTTCCATGGTGCCTTTTTAAAACCAtcctttgtgaaaaaaaaatcaaaacaactgaagaaaaaaaatctaaaagaaaactaaaacacGCTCATCTGTCACTTGTTTACTGTACctttttgcattgtttgatATAAAGTGGGGCTCAAACATTAACTATAACTACAAACTCTGTAACCTGTTACTGTAGTAGTTTATCAGGGTAATTACTTAGACATGGTGCAGATGCTTTATTTTCTCCTGTAGTGCTGTAAACACAGTTGTTTGTGTACTGATATTTTTGAGCTTggggacataaaaaaaaaatctgacttcCTCTGACTATCATGTACTTCCTGCTGTATCATCGTAACTTGTTTTGGTGATGTCATTCTGTGTATTAAACTTCTCTTTACTATTAAAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K16579 DCX; neuronal migration protein doublecortin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58391 lncRNA downstream 16818 25453512 ~ 25453834 (-) True G39470
TU58379 lncRNA downstream 170736 25299523 ~ 25299916 (-) True G39458
TU58377 lncRNA downstream 171423 25297876 ~ 25299229 (-) True G39456
TU58318 lncRNA downstream 294303 25175308 ~ 25176349 (-) True G39401
TU58301 lncRNA downstream 419134 25051181 ~ 25051518 (-) True G39384
TU58411 lncRNA upstream 5046 25528883 ~ 25529111 (-) True G39490
TU58424 lncRNA upstream 33459 25557296 ~ 25557522 (-) True G39503
TU58427 lncRNA upstream 35038 25558875 ~ 25559218 (-) True G39506
TU58435 lncRNA upstream 58502 25582339 ~ 25583014 (-) True G39514
TU58518 lncRNA upstream 204400 25728237 ~ 25728470 (-) True G39572
XM_043240265.1 mRNA downstream 23990 25303475 ~ 25446662 (-) False LOC122345796
XM_043240264.1 mRNA downstream 23991 25303475 ~ 25446661 (-) True LOC122345796
XM_043240267.1 mRNA downstream 23992 25303475 ~ 25446660 (-) False LOC122345796
XM_043240266.1 mRNA downstream 23992 25303475 ~ 25446660 (-) False LOC122345796
XM_043239176.1 mRNA downstream 207524 25231235 ~ 25263128 (-) False zfpl1
XM_043238566.1 mRNA upstream 39202 25563039 ~ 25568614 (-) False LOC122344921
XM_043240061.1 mRNA upstream 94274 25618111 ~ 25651008 (-) True hip1rb
XM_043240553.1 mRNA upstream 131670 25655507 ~ 25708679 (-) False kntc1
XM_043240554.1 mRNA upstream 131670 25655507 ~ 25708679 (-) False kntc1
XM_043240552.1 mRNA upstream 131670 25655507 ~ 25708679 (-) True kntc1
TU58333 other downstream 188366 25281886 ~ 25282286 (-) True G39413
unassigned_transcript_970 other downstream 475420 24995162 ~ 24995232 (-) True trnag-gcc_23
unassigned_transcript_967 other downstream 478557 24992025 ~ 24992095 (-) True trnag-gcc_22
unassigned_transcript_964 other downstream 537674 24932906 ~ 24932978 (-) True trnak-cuu_7
unassigned_transcript_963 other downstream 543601 24926980 ~ 24927051 (-) True trnak-cuu_6
TU58432 other upstream 38137 25561974 ~ 25568686 (-) True LOC122344921
unassigned_transcript_987 other upstream 353834 25877671 ~ 25877755 (-) True trnal-cag_26
unassigned_transcript_988 other upstream 363521 25887358 ~ 25887441 (-) True trnal-cag_27
unassigned_transcript_989 other upstream 364677 25888514 ~ 25888596 (-) True trnal-aag_30
unassigned_transcript_990 other upstream 366591 25890428 ~ 25890510 (-) True trnal-cag_28

Expression Profile