RNA id: XM_043240271.1


Basic Information

Item Value
RNA id XM_043240271.1
length 3028
RNA type mRNA
GC content 0.43
exon number 11
gene id trafd1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9001907 ~ 9008032 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTTCACGGTGACCGCTTCTTGTTGATACTGTTGTGTCACGAAACGAAAGCTGGACTGATTATTGCGGTAGTTGGAACAGATCTACCTCAGGCCATAGCAGTTTATtatatgtgtctgtgtatatttgCAGGGTCTAATGGCTTGTATCTCATGACCAATACTGTAGCGAACGTTATAGCTGACCAGAAATGGACACTCTTCGAGATGGCAGCCCAGGCATCTAGATTAATCGGACTTAAAAGCAGCTATTTAAAATGCCTTTGTGTCTAATCTGATGTGTtgacaaaacagcatttactgtTCGCCGAATAAGTCTTTTAATGCCTACTCGTTCTTGGACTGCGAACAAGAACGAAAAGTACTAAGCGAGTAGTTTTACTTCTCTAGCGGAACAGCAGCTTCAGGTGGTCGCGGACAAGCTTCGGCAATAATAAGACTATGGCCGAGGAAAATACCCAGTTTTGCAGTAATTGCAAGCATGACATTCCAGAAGCCAACTTTACAACACATGAGATCCACTGTCGGAGGAACATTGCTCTTTGTGAGGTGTGCCAGGAGCCTTTTCCACATGCTGAGCTTGTGCAGCACAAAGAGATGGACCATGCAGAGGAACAGTGCAAATGTGGATTAAAGATAGAGAAGAGGTTCCTAGAGGTCCACCAGaggtcagagtgcagtCATCGATTGGTCCCGTGTCAGTTCTGTGATCTGGAGGTGGCCTCCTTTCAGGCTAAAGAGCACGAGGATTACTGTGGGACCCGCACTGAGCCCTGCCCCGTCTGCAAGTGTAACGTTATGCTGAGAGAACAGCACATCCATCCAGCCCTGTGCGGAAGTCTGACTCCACCTCAGGAGAGGCACAGTAGTAGGGCAGGGACCCAGACCCCAGGAGCATGGTTTGAGACGCATTCAATCCATAACCtaatacacaataataatagcaCGGGGGCAGCAGATCGCAGGGGTCCGCCACGACCCTTGGAGGACAGACTACACAACAGCACCAGAGGAACGGTGCGGGGGGGAACCAGGAGAAATGCAGAAACAAGGAACAACGATTTTGCTTATTTGCTGGATCAGGAAACGGAGTtgggcaacaacaacaacagcctGCTGTGGTCTCTGGGACAGCTGCCAGATTATGAGTCCTCCAGTCTGGACTACATGCTGGCCCTCAGCCTGCAGAGTGAAGGTGACTTGGAGGATCCCCGACAGGAGGGTGTGTGGACTGATGTGTGGGACCGTCGTCTGGGAAGGACACCAGCCCCGAGCAATCTCACATCCCAGCTCTCCTCCAGAACTAACAACAACTGCACTGCAGCCTCCCCTAAAAGCAACCCGACGGTGGGCCACAGCCCCTCCTCAAACATCATGCTGCCTTGTGAGTTCTGTGAAGAGCTCTTTCCAGAGGAAGACCTTATCTTACACCAGACTGGCTGCAGCCCGGCCTCTGCTATTGCTTCCTTCAGTAAACAAGCTCCTTCTCTTCAATACGAAGAAATCATCAGTCAAGGGGCTAGTCATGTCATTCCTCCCCGCACACCCAGTCCACCCACCCTGCCCCTCTCCGTTTCACCACTCTCCTACAGTTCTTCTTCCAGCCCCATTGAGGGCGACGTTCTCATACCTTGTGAGTTTTGTGGCGTTGCCTTGGAAGAGGATGTACTGTTTCACCATCAGgaCAAGTGTGACCTCCGCCCCCAGACAGCTTATTCAATCGATGGATTGTCTCCACGGAAACCACACCACACTGCCAAAGAAGCCCACGAGAGGAGATCTCCTGAGAGGCAGAGAAGGGTGAGACACCAAGCTGACCCAGATGAGGAGCTCTTGCGGGACACTGCTCAGGGGTGGCAGAAAGGCTTGGACCAATGGCTATCCTCAACCTATAGTTGCTCAAAGAACACAAACGCTGAGCAGCAGGTGAAAAGCAGGAACCAAAGGCACAGAGGAGAAACAAACACGTACCTCAATGACAGCCACAAGCCCCGTTCTACAACCACCTCAGGACCCCAACACAGAGGAAGATTGGAAGGTCGAAGGAGTGATAAAAACACAGAGACACCAAAGGTGCCTAAAAAACATAATGTTGAAAAAGAAGAGGAGTAGAAAAGGGGAAAGAGTCTAACCAATCTTTGAGTCAAAGCAGTGACCTGTTATTACTGTGTATAGGCTTTTATGTTTGTgtctgtaaaacatttacatgtccagctgaattttattaattatttggcttgtaaatgtatttctttaattgcactagttttttttttccttctttgtatttttttctatggtgtttgtgtgtgatattaaatgtttcttttgagcTTTGTTaaccttttctttgttttaaagacgctggaaaatgttttatattttactgcAAACTCTACACATTATAGTATGAATATAGTagctttcataaaaatatattgatctATACATTAGTTAATGCAGTGGTTAACATGAACAGCAgaacaatgctgcatttattaatccTGGTTAATATACGTTTTTACATatactttttaacattaataatattagttcATAATGCATTGTAAACTAATAATGCACTAATGACCAATATTagatttatgattttttattaacaatgattaataaatgctgtaaaaaatatataattataaatgtgtgtgtataataaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatataaaatgcacacatacatttatacactaAATGCATTCTCTAATGTTACAGAAGTGTAATGTGAAGTGCTGCAGAAATTACAAATGCTTATTTGATCCTAAGtgtgaaataattttacaatgtacaggtaaaaacatcaaaatgaaagaaaaaaaatcaaacttgATATTTGAGAACTTTTTATTGTAAGACTGTCTGTATGGTTAACTAAATTGGTTTTGTTGTTATTCTGTTTATCTTCCCATGGTTATGTAACTATCACatcttttcaataaaatattttgctgtGGCTGAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50996 lncRNA downstream 10594 8991101 ~ 8991313 (-) True G34607
TU50995 lncRNA downstream 10884 8988611 ~ 8991023 (-) True G34606
TU50967 lncRNA downstream 67768 8933911 ~ 8934139 (-) True G34583
TU50966 lncRNA downstream 68827 8932860 ~ 8933080 (-) True G34582
TU50963 lncRNA downstream 74491 8927213 ~ 8927416 (-) True G34579
TU50983 lncRNA upstream 5274 9013306 ~ 9060814 (-) True G34594
TU51125 lncRNA upstream 238888 9246920 ~ 9248041 (-) True G34704
TU51339 lncRNA upstream 756041 9764073 ~ 9764532 (-) True G34869
TU51341 lncRNA upstream 758236 9766268 ~ 9766607 (-) True G34871
TU51347 lncRNA upstream 769601 9777633 ~ 9778238 (-) True G34877
XM_043240273.1 mRNA downstream 352 8999491 ~ 9001555 (-) True LOC122345801
XM_043238146.1 mRNA downstream 4373 8992183 ~ 8997534 (-) True LOC122344627
XM_043238499.1 mRNA downstream 52529 8938254 ~ 8949378 (-) True stxbp1b
XM_043239771.1 mRNA downstream 125409 8871280 ~ 8876498 (-) True dpp7
XM_043239027.1 mRNA downstream 358262 8632895 ~ 8643645 (-) True tsc1a
XM_043240456.1 mRNA upstream 14520 9022552 ~ 9023686 (-) True LOC122345922
XM_043240500.1 mRNA upstream 129389 9137421 ~ 9165718 (-) False nsmfb
XM_043240495.1 mRNA upstream 129389 9137421 ~ 9165718 (-) False nsmfb
XM_043240501.1 mRNA upstream 129389 9137421 ~ 9165718 (-) False nsmfb
XM_043240498.1 mRNA upstream 129389 9137421 ~ 9165718 (-) False nsmfb
TU50964 other downstream 71854 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 324189 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 570332 8429700 ~ 8431575 (-) True timm8b
TU50633 other downstream 587101 8411882 ~ 8414806 (-) True G34372
TU50440 other downstream 1280444 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU51091 other upstream 207476 9215508 ~ 9220507 (-) False vamp5
TU51236 other upstream 329796 9337828 ~ 9402623 (-) True G34789
XR_006251099.1 other upstream 1317083 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 1453176 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 1860332 10868364 ~ 10874064 (-) True G35371

Expression Profile