RNA id: XM_043240273.1



Basic Information


Item Value
RNA id XM_043240273.1
length 1622
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC122345801
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8999491 ~ 9001555 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTCACTGTACTGTTTATTCCTTGTAGTTAATAATTGGAGCATTTTCTACTAAACAAGAAAGCAAACAGAGTAAAGGTTGGTTTCTTACTGAACTTCAGGCTTTATAATCCAGTCCATCACAGGAAAAGGACGGGAGCTGCCTGGACAGGGCCTAAATTCATCTATTGGCTCAATTTGAAAAGGAATCATGGAAAGGAACATCATATATTTGTGGTTTTGTGCTTTTGCATTAGTTCATGGAAATCAAGAGACTTCACCACAACCTCCCATCAGTGATAAACTCCCATCATTAATAAAGATGAACAATGATTTTGCTTTTGACCTGTACAAGAGGCTTGTAGAAATGCCGGAGTATCGGTCCAAGAACATCTTCTTCTCTCCCCTCAGCATATCCATGGCCCTTTCTGAGCTGTCTTTAGGAGCCGGTGGAGAAACCAAAGAGCAGCTTCTCAGCGGCATCGGCTATAACCGCTCGGTCTTCAGCACTGAAGAAATGCACCAGATGTTCCACAGTCTCCTGGAAGAAATCGACCAGAGGACGGGGGTGGACATCGATGTCGGCACTGCTCTATATGCAAGCGACAAATCTAAACCTCATCCTAAGTTCCTGGAGAACATGAAGGAGTTTTACCACTCTGATGGCTTCACTGTGGATTTCAAAGCTGCAGAAACATTAgataaaattaatgaatatgTGAAGGAAAAAACACATGGGAAAATAGATCGAGCTGTTGATTCTCTGGATCCCAATACTTTAATGTTCCTTCTcacttacatatattttaaagGAAAATGGGACATGCCATTTAATCCAAACAAAACCAGTGAGGATATATTTCATGTGGATAATGAGACCACCGTTCCAGTACAAATGATGCACCAAACCGAACTTCTCAAAGTTTATTATGATGCTGAACTCTCTACTAAAGTCCTCTGCCTAGACTACAACGACTCTTTCTCCATGTTTCTGGCTATaccagatgaaaaaaaagatctgaCCATCAATGATCTGGAAAAGGCCATCTCTAGACAGCACATTGAAAAGTGGAGGGGATCTGTCTGGAAAagAAAACTTGACGTCTATGTTCCCAAGCTGTCTCTGAAGACAGACTATACCCTAAACGATATTTTGAAGGGAATGGGAATAACAGACATGTTTTCACATAAAGCTGACTTCTCAGGAATTGCAGAAGAAAATTTCTATGTTTCAAAGgttttgCATAAAGCCACCCTGGATGTAGATGAGGAGGGAACCACCGCAGCAGCAGTGACCACAATTGAAATCAAAGTTGCTTTGTTACCAATGCTGTTCCGTTTTGACCGTCCATTCATGATCTTCATCACTGACCAAAAAAATGACCACATCCTGTTCTTAGGAAAAGTTGTCAACCCAGCAGTGTGACATTCAAGATTTATCCAGCAGATGGCCATAATTTAACAACTATCATCATGCCAACCCCTTTAGAATTTTTCTAAAACAACTGTTGGTGTTACGTACTGTATGAAGATGGTTTCTAGATCTCCTTTAATACTGAATGTCTGCTTCCATTATGGCTACGTTAAATGGAAATGGTAAGACGTCTTCAAaagatttcaataaaataaagagaaaagcaaCTGGA

Function


GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K04525 SERPINA; serpin A

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU50996 lncRNA downstream 8178 8991101 ~ 8991313 (-) True G34607
TU50995 lncRNA downstream 8468 8988611 ~ 8991023 (-) True G34606
TU50967 lncRNA downstream 65352 8933911 ~ 8934139 (-) True G34583
TU50966 lncRNA downstream 66411 8932860 ~ 8933080 (-) True G34582
TU50963 lncRNA downstream 72075 8927213 ~ 8927416 (-) True G34579
TU50983 lncRNA upstream 11751 9013306 ~ 9060814 (-) True G34594
TU51125 lncRNA upstream 245365 9246920 ~ 9248041 (-) True G34704
TU51339 lncRNA upstream 762518 9764073 ~ 9764532 (-) True G34869
TU51341 lncRNA upstream 764713 9766268 ~ 9766607 (-) True G34871
TU51347 lncRNA upstream 776078 9777633 ~ 9778238 (-) True G34877
XM_043238146.1 mRNA downstream 1957 8992183 ~ 8997534 (-) True LOC122344627
XM_043238499.1 mRNA downstream 50113 8938254 ~ 8949378 (-) True stxbp1b
XM_043239771.1 mRNA downstream 122993 8871280 ~ 8876498 (-) True dpp7
XM_043239029.1 mRNA downstream 355701 8632895 ~ 8643790 (-) False tsc1a
XM_043240272.1 mRNA upstream 352 9001907 ~ 9008032 (-) False trafd1
XM_043240271.1 mRNA upstream 352 9001907 ~ 9008032 (-) True trafd1
XM_043240456.1 mRNA upstream 20997 9022552 ~ 9023686 (-) True LOC122345922
XM_043240500.1 mRNA upstream 135866 9137421 ~ 9165718 (-) False nsmfb
XM_043240495.1 mRNA upstream 135866 9137421 ~ 9165718 (-) False nsmfb
TU50964 other downstream 69438 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 321773 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 567916 8429700 ~ 8431575 (-) True timm8b
TU50633 other downstream 584685 8411882 ~ 8414806 (-) True G34372
TU50440 other downstream 1278028 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU51091 other upstream 213953 9215508 ~ 9220507 (-) False vamp5
TU51236 other upstream 336273 9337828 ~ 9402623 (-) True G34789
XR_006251099.1 other upstream 1323560 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 1459653 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 1866809 10868364 ~ 10874064 (-) True G35371

Expression Profile


XM_043240273.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 250.
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XM_043240273.1 Expression in each Bioproject

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XM_043240273.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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