RNA id: XM_043240278.1


Basic Information

Item Value
RNA id XM_043240278.1
length 2512
RNA type mRNA
GC content 0.48
exon number 19
gene id LOC122345804
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24714443 ~ 24723909 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGACAGGTGCTCTTCCCAGTCAAAACCAAGCGCCACGCGACTGCTCATCTGTtcgaaataaaagaaaataagataagataaaataaaataaaatattttttttgttgttgttgttgtaagcTACTCAAAGTATATACACCGTTGACTTTCTTTAGGGTGATGTATTACGTCTATTTGCTGTGgttatttCTGTTAAGTTTGTGTCCTATTTCTGTTCCTGATTCCATACCTATTGgTATGTTCAGGACAAAGTGCCATGATCGTCATTTCTGGTTGTCGGTCAACTCAAATTTCCTTGGCCACAATTTCAGGTTTGATGTTAAAGCAGACTCCGAGGTCCAGAAGGTTTCAGGTCGGTGGGCAGCAGAGTGTGGTTATACTGTGGGTCTTGACTCCTGGGGTGACCTGCTGCTGCGTGTTTCCTATCTAGCCTGTCTGGTGGAGAATCAGAGGGAGACTGAATTTCAGTTGATGGTGTGGTTTATAAATCAGGACGTGAATGAACAGGAGAAATCCTACCCTTTACTGCTCGCCTGCCCTCTCCAGGTCCCATGGGCACATCGGGAGCTCGTCTGTGAGCAGAACTACATGGAGGTGTCTGTGCTGAAACTGCTGCCTCCTGATAATCATATCAGCACAGCCTGGGTAACACCGGCCCCTGtgGAGCTGGGTGAGGGTCTGAAGGAATGGAGGGTGGTGTTCCGCATGCCAACGCTCAATCAGGAGGGTGGCATGAAGGAGGAGACCGTTCCATTAAAAATGGCACACTTGCTGGGCTACCACATTAACACCACCAACTCTCGCATCCTCCTACGTTGTGCCTATGGATCCAAACTGGCATACATGCTACAGTGGGGTGAGACTGACGTGGAAGTGGTCAGTGCCACCATCTTATACAAGCTTAAATGGACCCTGTTGACAGTGGACATGTCGGTGTCCTGCACCATTGGTCAGGCTCGAATTGATGATTCTGATGTGTTGTGGTCTCACCCACATGACCCTCCCACTCTGGTCCATCCTCCCTTCATAGAAAAGGGTCTGAAGTTGGGCGTTGGGGGGCAGTACCTGTCTGAGTGTGTTGCCCACCAGCGTGGTTACAtgattcacaaaaacaacagaacttTGGAGATACGTATTCCTTTCGGTGCTGAAGGAGGAATCATAAAGAGTCATGTGATTGATGGACTGTACTCTCAGTCATATTTTGTGGACGTGTTCCTGCTGCGCGAGTGGGAGGATACTTCATTGAGTTTGACTCAGCAGCGGATGTTCAGAGCACTTTATATTCCTCACCTGCCCCGATCAGTCACACTTATTAACAAGACTGTGCCTTCACAGAGAGAGTTTTCCATTTCCTTGTGCTGTTTTCCTCGTGATGTTTCTTTGCGGAATGTGACTGTAGCAGGTCAGCCAGTACTCTGGGaggaaaaggaaaggaatgGATTTCGTCTCTCTCAAAATCCTCTTCCCAACAACACCTACATGTATCTGTTTCAGATGCCCTTCTCTCATCCACTCATAAGACAAAAGTATTTGGGAGACAGGTTTAGGAGGTATACTCTTTATGGGGTCTTCTCTTTCATTCTGTTTCCTGATGGAGAGATCTACAACCATTCTACCACTGTTGAGGCAGAACTACAGGATGTAGtcttgCCAAAGCTCGAAGGAGAGTGTACAGTGCGAGGTGTGCGGACATTGGCTTACTATGGTAATATAGACTCCTCTGAGTGGAGTTTGTATGTAGGAAGGAGGAGGCTTGACTGGGAGCTGGTGGAGCTTGGGGGATTCTCTCTGGACGCCCGCGAGCTGTACCTTAGCCTGGAAGTTCCACTATATGCCCCTGGCATGGCCTATGAGGGCCTGGGACTGCAAGGTCTGTTAGTGAGTGTGCTGGTGAGTTTAGTTCATGTGGAAACAGCAGAAGAACAGACTCATGTGCAGCGCTGTGTGTTCCCTGTGAGAGAGTTATTGGTGTGTCTGCCTGATGGAAGAATGGTGGTAATGATCGACACAGCTGGGGTTTCTCCTCCAGTTAAcccaaaacacacagctttgTTGGATCCTGCCTGTAGACCACTGGAGACCGACCATTCCAGAGCCTTATTCAGTTTCTCCATAGACTCATGTGGCACTTTCACAACACATGACGGTGATCAGGTGATTTATAGGAATGAGGTGAGAAACATGCCCCCTTTTCCTCCACACCTGAGACCCCTCAGCCAGAGTCAACCACATTATAGGGTGCCACTTGGCTGTGTCCATCCAGAAAATGGAAATCGCACCCTTGCCATCTACCTGCCATCCCATTCTCCCACACTTCTACCCATGAAGCACACAGGCAAACCAGCCTTGAACTCACACACAAGGAATCCTGAGAGCAGAGATCAAAAAAACCACTCATTGCCAGCTGTAGGATGACACCCCTAAAAGCAATAAAACTTGCCTGCACTGTTTCTATGGAGCTGAAGGTGGAGCCCGACAGCACAATGGAAGGGGCTCGTCCTGTTCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250987.1 lncRNA downstream 89565 24623559 ~ 24624878 (-) True LOC122345299
TU58207 lncRNA downstream 89591 24623853 ~ 24624852 (-) False LOC122345299
TU58194 lncRNA downstream 192422 24521562 ~ 24522021 (-) True G39298
TU58192 lncRNA downstream 194056 24519667 ~ 24520387 (-) True G39296
TU58150 lncRNA downstream 223651 24414900 ~ 24490792 (-) False G39274
TU58247 lncRNA upstream 6303 24730212 ~ 24730391 (-) True G39337
TU58251 lncRNA upstream 7730 24731639 ~ 24732075 (-) True G39341
TU58240 lncRNA upstream 22763 24746672 ~ 24748576 (-) True naa38
TU58257 lncRNA upstream 29173 24753082 ~ 24753322 (-) True G39347
TU58223 lncRNA upstream 30295 24754204 ~ 24758627 (-) True LOC122345923
XM_043239693.1 mRNA downstream 24253 24685346 ~ 24690190 (-) True rangrf
XM_043239694.1 mRNA downstream 24309 24685346 ~ 24690134 (-) False rangrf
XM_043238393.1 mRNA downstream 52843 24656827 ~ 24661600 (-) True bspry
XM_043239290.1 mRNA downstream 62263 24633302 ~ 24652180 (-) False traf2b
XM_043240471.1 mRNA upstream 23122 24747031 ~ 24748610 (-) False naa38
XM_043240470.1 mRNA upstream 25373 24749282 ~ 24751282 (-) True sat2b
XM_043240457.1 mRNA upstream 30293 24754202 ~ 24758668 (-) False LOC122345923
XM_043240635.1 mRNA upstream 35569 24759478 ~ 24782648 (-) False taf6
XM_043240636.1 mRNA upstream 35569 24759478 ~ 24782648 (-) True taf6
XR_006250980.1 other downstream 120327 24588028 ~ 24594116 (-) False anapc2
TU57904 other downstream 513947 24197705 ~ 24200496 (-) True G39113
TU57720 other downstream 826763 23887303 ~ 23887680 (-) True G38973
TU57636 other downstream 957855 23751880 ~ 23756588 (-) True G38917
TU57575 other downstream 1109710 23602244 ~ 23604733 (-) False LOC122345364
unassigned_transcript_960 other upstream 193911 24917820 ~ 24917893 (-) True trnan-guu_1
unassigned_transcript_961 other upstream 194096 24918005 ~ 24918076 (-) True trnak-cuu_4
unassigned_transcript_962 other upstream 200239 24924148 ~ 24924220 (-) True trnak-cuu_5
unassigned_transcript_963 other upstream 203071 24926980 ~ 24927051 (-) True trnak-cuu_6
unassigned_transcript_964 other upstream 208997 24932906 ~ 24932978 (-) True trnak-cuu_7

Expression Profile