RNA id: XM_043240282.1


Basic Information

Item Value
RNA id XM_043240282.1
length 2877
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC122345805
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8164171 ~ 8170627 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCAGCCTTTATAAACAACTTGAGACGCATTTCCTCACGACATATCCTTGAAtgaaagcacatttatttattctcaacCGAAGATTTTAAAAAGCCACTAGTCAACAAAATGGAGGCAGAATGTTAACttggctttttgttttgctaacAAGCTATGTGTCATACTAGGGAACAACTTAGTCTGTGATTTAATAAAACGACTAGCTTTGCATTTGGTAATTGAGATTTGTTTATATGTTGGAGGTAACCATTTTGCAGCAGTTCGTATTGTGAATGTGGTTGTTTGTCGTCTTTAAAAACAACCTGGCAGCTATGGACAGATAGCTCTTGAAGGGAGGACCACGCATTGTGCTTTACATTCAGAGCTGCAGCAGGATGCCCCCGTCGGGTAAACGCGCCCTTCGCAGAGAGGAGCTGCAGCTGGAGCTGGCGTGTGAGTGGGGTTCGTGTCAGGAGACGTTTGACAGAATGCAGGAGTTTTGCCAGCACGTGGAGAAACATTATAAAGCCACCGTGGACAGCGAGACAGACTTACCAGAAGAAGAGCGTAACTGTCTGTGGAGAGACTGTGGCTTCTGCTCAGTGGAAGGAAATGCTGAGCTTCTCAGACACATGTTCTTCCATTGCTACCACACCAAGTTGAAGCAGTGGGGTCTTGCTATACTCAAGGGCCACAGTGACATGGGTGCCTGTTCGGTCGGCCTCCATAACCGCAACATTGTGCCTGAGGTCCAGGAGAACTTCCTTTGTCTTTGGGAGCATTGTGAGATGTCTATGGATAATCCAGAGTGGTTCTACAGACATGTGGAGATGCACGCCCATTGTCTCGAGGCTAATGAAGAGAATGTTTTGTTCTGTGGCTGGAAAGACTGTGAGGCCTCTTTCAAGGGCAGGTTTAAGCTGCGAGAGCACATGCGTAGCCACACACAGGAAAAACTGGTAGCATGTCCGACCTGTGGAGGAATGTTTGCCAACAACACAAAGTTCTTTGACCACATTCGACGGCAAACCTCAATAGAAGGTCAAAGATTTCAGTGTTCGCACTGCTCTAAACGTTTTGCCACCGAGAGGCTGCTGAGGGACCACATGAGGAACCATGTAAACCATTATAAATGTCCGCTTTGTGATATGACCTGTCCATCACCGTCCTCGCTGAGAAACCACATCAAATTTCGTCATTCCAATGAGAAGCCTTACAGCTGTGACTACTGCGAGTACAGCTGTAAAAACCTGATAGACCTGCGGAAGCATTTAGACACTCACAGCAGTGAGCCAGCGTATCGATGCGACTTTGCCGATTGTGACTATTCCACTCGCTCGCTTTACTCAATCAAGAACCATTACAAACGTGTTCATGAGGGAGATTACACTCCTCGCTATAAGTGTCACGTGTGTGAGCAGTGCTTCACCCGGGGGAACAACCTCACTGCACATTTACGCAAGAAACATCAGTTCAAATGGCCTTCAGGACACCCGAGATTCAGGTATAAAGAACATGAAGATGGGTTCATGCGCCTGCAACTGATCCGCTATGAGAGCGTGGAGCTGACAGAGCAGCTGATGCGGGAGCGGCAGGGAGAAGGGGACAGCAGTGAGTCCAGCCAGCAGAACGTCCAGCCTGGGGAAGAACTGGAGGAGACGGGACCCTTCAGCACCATGGCTGGAAATACAGAGGCAGGAATAAGAAAGGAGGCAGTGGATGTCTGTAGGACACATGAAAATACTGAAAGTGTGTTCTTGGTGTTGACAGCCGGCGCCCCCACAGAAACAGACTCTACAAGGGAGGGGGCCGTAATGCGTCAGCTACAGGACACTGCCCAACAGCTGGGCATGGAGGTGGTTTAACTGCACCTCCGATTACTGGAGCACCCTAAGACTGCTGTGTCAGACAATAAGAAGGTACATTAGGACATTCCAGTGACAAAATGTACTATGAGACTAACCGGGTACCAAAACAGGTATAGAGCGCATGTGAGAATTATCATCATCAGAACAGAGAAAGCTAAATCACAAGTTCCTCCGAGGATGTGCTGAAATGAATAGTTTATTCAGAAAAGAcgttagttttttttgttataattttctCACCTCTTCTGACTCTTTATTTAGTTTgtcacaaaatgcaaaataagctGCCTTTTTCTATTTAACCAACAATGATCATTTATACTGCCAGCTTCGAGACAGACAAAAAACACCAaggtaatatattaaaatgtagttcaCATGATTTTACGTTTGTAAGAAGTGATTTTTCCCTGTTTGGAACTTGGAAGTTTCTTTTGTAGGGAAAACCCAAGCATACAAATTCAGGATCTCTTATTGTGTTTCTTAAGAGAAGGATACTGCAGGGTTAGAATATTATCTAATATAATCGTTTTGGGCTGAACTTTACCTTTAAATTTGACTGTTTGTATGTGTGCGCAAATGAATGAGCGAGAGAGAAGACGGTAATGGGGAACGGAAATGTTTAATCCTACTGAACAGTTTAATCAGCTTTCTTTGACGGGTTCAGACTTAATGTGAAGGAAGATGGACAGATCTCTGTGGAGAACTCTTTACAGTGTATAGTTTTATATAGTGTGCTTCGGTTTTAAAGTTGAATTGGAAGTGCTTCTGAATTTTAAATCACCATgcccattttatttatttttctatgttATATTGATACCAGTTCTGTTGTGCAGTAATACTGCTATTGTATCAAAGTAAACTGTAGTTTAATTATAGggttttttatatgtttttccttagaatatttttttgccatttgagGCCtgataatctttttaaaaagagagaatTCATTTAGGGCAAACTGACTACAATAATTGACATAACTTTCTTTTGAATAAACAATGGCAGTAATTTCAGta

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50532 lncRNA downstream 2395 8160877 ~ 8161776 (-) False si:ch211-117m20.4
TU50512 lncRNA downstream 63471 8100486 ~ 8100700 (-) True G34290
TU50498 lncRNA downstream 150234 8013686 ~ 8013937 (-) True G34276
TU50497 lncRNA downstream 150620 8013347 ~ 8013551 (-) True G34275
TU50482 lncRNA downstream 226800 7936511 ~ 7937371 (-) True G34265
TU50548 lncRNA upstream 26961 8197468 ~ 8260129 (-) True G34314
TU50544 lncRNA upstream 28723 8199230 ~ 8200082 (-) True G34310
TU50543 lncRNA upstream 46456 8216963 ~ 8218476 (-) True G34309
TU50549 lncRNA upstream 85352 8255859 ~ 8262919 (-) True G34315
TU50577 lncRNA upstream 96586 8267093 ~ 8270648 (-) True G34332
XM_043238368.1 mRNA downstream 145 8161282 ~ 8164026 (-) True si:ch211-117m20.4
XM_043238367.1 mRNA downstream 145 8161474 ~ 8164026 (-) False si:ch211-117m20.4
XM_043238150.1 mRNA downstream 9391 8138108 ~ 8154780 (-) False abcg4a
XM_043238149.1 mRNA downstream 9391 8138108 ~ 8154780 (-) True abcg4a
XM_043238301.1 mRNA downstream 27567 8131517 ~ 8136604 (-) True pdzd3b
XM_043240285.1 mRNA upstream 916 8171423 ~ 8175357 (-) True dpagt1
XM_043240284.1 mRNA upstream 916 8171423 ~ 8174898 (-) False dpagt1
XM_043240350.1 mRNA upstream 32913 8203420 ~ 8210189 (-) True hmbsa
XM_043240352.1 mRNA upstream 32913 8203420 ~ 8210188 (-) False hmbsa
XM_043240351.1 mRNA upstream 32913 8203420 ~ 8209312 (-) False hmbsa
TU50440 other downstream 442708 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50081 other downstream 767018 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 1041707 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 1042322 7121722 ~ 7121849 (-) True LOC122346221
XR_006251012.1 other downstream 1220968 6930872 ~ 6943203 (-) False usp20
TU50633 other upstream 241375 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 259193 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 504042 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 758963 8929470 ~ 8930053 (-) True G34580
TU51091 other upstream 1045001 9215508 ~ 9220507 (-) False vamp5

Expression Profile