RNA id: XM_043240284.1


Basic Information

Item Value
RNA id XM_043240284.1
length 1589
RNA type mRNA
GC content 0.44
exon number 9
gene id dpagt1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8171423 ~ 8175357 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGCGACGTGTACGGGCACGTGCTCTATAGCTGTATTTGAAATCTAATTTTTGTCAGATTCGAATAAACTTGTTAAGCCAATGACAGCTTCACTATGGATATGCTACATAAAAGTTTTGAATGTTGCTGACAGGAAGAGAACGCTGTTTTCAACTAGGCTTATCggcatataaattatatagagCACGGTAGATACGttacattgtgtttttatgtcgTGTTAGACCATGGAGAAGATGTCTCCAATTCCTACTCTTCCTCTTATCATCAACTGTTGCATGTCTGCACTTGGGTGCATCGCAACAGTCAAACTGATTCCTGCTTTTAAGGATCACTTCATAACTGCCAGACTCTATGGCATGGAcctaaataaaaccataaagaaAGAGGTGCCTGAATCTCAAGGTGTAATCAGTGGCACAGTCTTCCTCATCATTCTTTTCCTCTTCATCCCTGTCCCCTTCCTTCAGTGCTTTATGGGAGAGCAGTGTCAACGGTTTCCTCACAACGAGTTTGTGCAGCTGATTGGTGCTTTGTTGGCCATCTGCTGCATGATATTCCTGGGCTTCGCTGATGATGTTCTGAATCTGCGATGGAGACACAAGCTGCTGCTGCCTACTATGGCCTCCCTGCCTCTACTCATGGTCTACTTCACTAACTTTGGCAACACTCTCATCGTCGTGCCCAAACCTTTTCGTGTCCTGCTGGGGATGCATCTGGACTTGGGTATtctgtattatgtatatatgggAATGCTGGCTGTATTCTGCACAAATGCCATCAACATCTTGGCTGGAATCAATGGCATTGAGTCTGGGCAAGCTCTCTTCATATCTGGCTCCATCATCCTTTTTAATATACTGGAACTCAATGGAGACTACAGGGATGACCACGTTTTCTCTTTGTACTTCATGATTCCCTTTTTCTTCACCACATTAGCCCTCTTCTACCACAACTGGTACCCTTCCTCCGTGTTTGTGGGAGACACTTTCTGTTACTTTGCTGGAATGACGTTTGCAGTGGTTGGGATACTCGGCCACTTCAGTAAGACCATGCTGCTTTTCTTCATCCCCCAAGTCATCAACTTCATTTACTCTCTGCCTCAGCTGTTTCACATTATTCCCTGTCCCAGACATCGCCTTCCTAGGTTACAATCCGACACGGGAAAGCTTGGCATGAGCTACTCCAAGTTCAAACAGAAGGACCTGGGCAAATTAGGGCAACTTATTCTGAAGGTGGCAGAAATGTTGTGGCTTCTAGATGTGCATCGAGGGCAGGAAGGAGATGATGAGTTTATTGAGTGTAACAACATGACCCTTATCAACCTGGTACTAAAAGTACTGGGACCTACCCATGAGAGAAACCTGACTGCCATCATGCTGTTAATACAGGTCTTGGGGAGTGTTGTGGCCTTTGGAATCCGGTATCATCTTGTGCGTCTGTTCTACGACGTCTAGACCACTAGAGTTTCTGAGAGACTTTACAAGCTGCTGCTTCcatctgaagaaaaaaactgaaacaaaactgATTGTTGTAAGAATAATTGCTATAATGCCTGTCCTCTATAAAGTATGGGATCTTGATACTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50532 lncRNA downstream 9647 8160877 ~ 8161776 (-) False si:ch211-117m20.4
TU50512 lncRNA downstream 70723 8100486 ~ 8100700 (-) True G34290
TU50498 lncRNA downstream 157486 8013686 ~ 8013937 (-) True G34276
TU50497 lncRNA downstream 157872 8013347 ~ 8013551 (-) True G34275
TU50482 lncRNA downstream 234052 7936511 ~ 7937371 (-) True G34265
TU50548 lncRNA upstream 22570 8197468 ~ 8260129 (-) True G34314
TU50544 lncRNA upstream 24332 8199230 ~ 8200082 (-) True G34310
TU50543 lncRNA upstream 42065 8216963 ~ 8218476 (-) True G34309
TU50549 lncRNA upstream 80961 8255859 ~ 8262919 (-) True G34315
TU50577 lncRNA upstream 92195 8267093 ~ 8270648 (-) True G34332
XM_043240280.1 mRNA downstream 796 8164171 ~ 8170627 (-) False LOC122345805
XM_043240281.1 mRNA downstream 831 8164171 ~ 8170592 (-) False LOC122345805
XM_043240279.1 mRNA downstream 833 8164171 ~ 8170590 (-) False LOC122345805
XM_043240283.1 mRNA downstream 838 8164171 ~ 8170585 (-) False LOC122345805
XM_043240282.1 mRNA downstream 916 8164171 ~ 8170507 (-) True LOC122345805
XM_043240350.1 mRNA upstream 28522 8203420 ~ 8210189 (-) True hmbsa
XM_043240352.1 mRNA upstream 28522 8203420 ~ 8210188 (-) False hmbsa
XM_043240351.1 mRNA upstream 28522 8203420 ~ 8209312 (-) False hmbsa
XM_043240349.1 mRNA upstream 28522 8203420 ~ 8209312 (-) False hmbsa
XM_043238357.1 mRNA upstream 97051 8271949 ~ 8282158 (-) False stk36
TU50440 other downstream 449960 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50081 other downstream 774270 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 1048959 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 1049574 7121722 ~ 7121849 (-) True LOC122346221
XR_006251012.1 other downstream 1228220 6930872 ~ 6943203 (-) False usp20
TU50633 other upstream 236984 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 254802 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 499651 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 754572 8929470 ~ 8930053 (-) True G34580
TU51091 other upstream 1040610 9215508 ~ 9220507 (-) False vamp5

Expression Profile