RNA id: XM_043240289.1


Basic Information

Item Value
RNA id XM_043240289.1
length 3259
RNA type mRNA
GC content 0.42
exon number 4
gene id si:ch211-214j8.12
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10083719 ~ 10087885 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTAGTTTACGCTTCAACTGAAGGCTATTAGACTCTTACAAACTGTACGTACTCTACAAACGGAGAGAGACAAACattaattgtatattaattGTAGAATAGCTCTGAAGTCTCATATAAAACTGCTGAATCTGAGAAACGTGTAAAAATTCACGCTGTTGCTGGAGCGAGGAAAGCGTTTAGAGCAAAGGTGTGTCGTTACAGTAGTTCATTTCTGAGTGACATTGCATATTCAGttattttctattgttttgCAGCCTCAGTGATATAATTATGAATCGATCAAACGCATGGACTTGTGTTTAGACTGTAAATAAGGCAATGCACAAAACGGTTTTTCGTTTTTAGTAAACTTATTTTTACGTTATATAACACTGTTATAACCTGATATAGAGTTCCCTTGCTGTTTTAACTATGAACTCGATCTGTATTTTGgtcaataatgtgtttttaaaataaagtattaaagtgttttaaaataactatatattaaGCACAGGTACATGTTATGTATATAACACGGATTATTTACAGGCGAGGTGTGCCTCAGTAAGGTCATCTTGCTTTATGCCatgattaattcattaatcGTCTTTATCAGTAACTGTCAGGGTGAAATATGCCCTTGTTCCGGCAACTTGAGCCCACACCGGAGAGGGAACgacagaggaagaaaaaacagaagACTGAATGGACTGAGGATGAGGACGAACCGTCCACTCTGATTGGCCTCTGTCTTCAAAACCTAGCGGAGAACATGAAGGAGATGTGGGCAAAAGATTACGCCCAAAAATACATGGACCAGTATTTCTTCAGATATGTCATGGGTCCATTCAGCTTATTACCCGGTGAGTTGTTGGAAGATCTGTTGTGCATCCTGTCCTCGCGGAATTTGTTGACACGCGCTGCCCTGCATCTCCTTCTCCTCCCGCAGCTGAGCTGTTTGTCCCTCACATCAGCCTGCAGCCTCGTCAATGCCAACCTCTGCTCTCTTATCCAGATACGCTGCcagAATCTTCAGTCTATGGATCTTAGTGGCGCACAGAATATATCTGCATCAGTGCTGTGTGAGCTCCTGGGCAGCCAAAGTCGTCTCCATTCCCTCTCCCTGGTTGGGACTCAGTGTGATCAGAGAGTGATATCAGTGGTCTCCCGCCAGTGCCCCAAACTGAAACACCTGGATGTGTCCCGGTGCCTTCACCTCACCCCTGCAGGCCTGCTCCCTCTGGCCTACCAAGAACCCCCTGTCAAGAACACAAACATCAGCAGCCTGTTAGCTCTGGATATCGGTTTAGCAGAAAATGAGCGAGATGCAGTAGCTGCGGTTGCGTTTCTCCTGCTCGGCTTACCTGGTCTTCAGAGGTTGGCAATGGAGGAATTGGGACAGGCTTGTGTTCTCATACAGAACAAGCGGTTTGAGGTGACTGAGGAGTTCAGTAGTCGAGAAGGTGCGCCACTTCTTAAAGACATGTGGGCGAAGCGAACACAGGAAGACCACTTGAAAGACAGCAGTTTACTGTGTGCAGATGGAGAGGAAAATTTTACTTTGGAAGCAAAACTAGATGAATGTTTGTCATTAGAGGAGAGTCAGACAGAAGCTAGTGATAATACTGATATGAATGGACGAACAAGGACTTCAGGAGAGGGTTGTGAAAAAGATGGATGTAGAAGTAGAGCTTGTAATAAAAGGGAAAGCATGACGACATCTCTCAGGGATGTACAAGGACTGTCTCTGGATACTTTAGAGGCGGTAGGGAAGATCTGCCCTGAGCTGCGTGTCCTGTCTTTGGACTGTCTCCAGAGCAATGTGGATAATAATGTTGACAGCTTTGAACAGGCAGCAGTTTTAGCCAGAGGACTTGGTAGATTTTCTGGACAGCTATGCTGTCTTTCTCTACAGTTTTCTGGTCTTCTTTCTGAACTGGTTCCAGCACTTAAAGCCGCAGGCTCACATCTGCTCTCACTCAGCTTGGAAGGCATCAGGGCTGATGGACATACTCCTCTTTTGGAGCTCATTCATGCCTGTCCCAGACTCACATCTCTTACTATTCATTTAGACCCACCCAGCAATAATTTGGATGGAGATGAGGAGGAGGGTGAAGATGAAGGCCTTCTTTCCAATCTACCATGCATTCCACACCTCCGCTCTTTAACACTAAATTTTTCCCTGGATGAACGGCAAATAAAGCCTGCGTTGTGTTGGAGGTCTCTGAAGGGAGTGCTGTGGGCACTACTTAGGGGCGCTTCACTCCTTCAGAAGCTCTCACTAATTGCTGTTCCCTGTCGACTGGACCCTGTGTTCAAGCTTGTCCTTAATCATCGGGCCAAACCCCTCGGAGCCCTAGACAGTCCCCCACTGCACTGCCTCAGATCTGCTAGCCTGAACCGCTCAGATATCGCTATGGAGACTGTAATACATATCGTAAACACGTGTAGGCGCTTGTCCCATTTGGATTTGAGTGGCTGCTGGGCATTGACTTTGAGCAATATCACAAAGTTACAATGCAAAGCCAAAAGGAGGCGCCATACACTGCAAATAACATGGACATaaagtggggggaaaaaaagatcatGCTGAGATTGAAAGTGAGTTGTATGTCACTGTGTGATTTtgttgattattatatttttgtctttcacAGATGCCTAGAATTTCCTGTTTTATACaggtattacaaaaaaaatgaagtgcaaTTACATATTCtatgaaactgaaaatatgtGTTGCTGATACAAAGATAAAACTAACCAAAATTACAATGTACTGCTcataatcaaatttaaaattgtcCTTCGTAATTTTCTATCTATATGTCCACAGAACCTTtgagatttatatttatgtttacacCAAAAAGTCTGTGTTTTAGAACCCATAAAGtattgttttggggtttttttagaaAGGCACTTTTTCAATATGACCATCTGTTCATTACGCACTTTGtcaagtttttttcttcttcttgtcaTGCactttgttataataaaataattgatgtTTCAGTGCATAGGTGCTAGAACAAGAGCAAgtagatgtatttaaaaaaaaaaatcacttttttaaatcacagtaatatattgtattactgATCTATATATACTActgattttatatacattttaatgtgatCTAAACgctgctttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgcgcTCTTCTTTCACTGTGGCGCGAAGCCTTCACAAAAATAAACGCTCATTGGCCAGTTTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51347 lncRNA downstream 305481 9777633 ~ 9778238 (-) True G34877
TU51341 lncRNA downstream 317112 9766268 ~ 9766607 (-) True G34871
TU51339 lncRNA downstream 319187 9764073 ~ 9764532 (-) True G34869
TU51125 lncRNA downstream 835678 9246920 ~ 9248041 (-) True G34704
TU50983 lncRNA downstream 1022905 9013306 ~ 9060814 (-) True G34594
TU51619 lncRNA upstream 193524 10281409 ~ 10296141 (-) True G35035
TU51637 lncRNA upstream 249862 10337747 ~ 10341167 (-) True G35047
TU51725 lncRNA upstream 290881 10378766 ~ 10378998 (-) True G35107
TU51762 lncRNA upstream 425045 10512930 ~ 10513285 (-) True G35139
TU51766 lncRNA upstream 428786 10516671 ~ 10517342 (-) True G35142
XM_043240290.1 mRNA downstream 49 10080291 ~ 10083670 (-) True dhfr
XM_043238175.1 mRNA downstream 4235 10073972 ~ 10079484 (-) True ankrd34bb
XM_043239513.1 mRNA downstream 23298 10058909 ~ 10060421 (-) True ak6
XM_043239509.1 mRNA downstream 24945 10053979 ~ 10058774 (-) True marveld2b
XM_043239510.1 mRNA downstream 31161 10046898 ~ 10052558 (-) True oclnb
XM_043240817.1 mRNA upstream 2801 10090686 ~ 10094576 (-) True bco2l
XM_043238926.1 mRNA upstream 26896 10114781 ~ 10118225 (-) True klf9
XM_043239649.1 mRNA upstream 32472 10120357 ~ 10226885 (-) False trpm3
XM_043239645.1 mRNA upstream 32472 10120357 ~ 10224785 (-) False trpm3
XM_043239644.1 mRNA upstream 32472 10120357 ~ 10224784 (-) False trpm3
TU51236 other downstream 681096 9337828 ~ 9402623 (-) True G34789
TU51091 other downstream 863212 9215508 ~ 9220507 (-) False vamp5
TU50964 other downstream 1153666 8929470 ~ 8930053 (-) True G34580
TU50888 other downstream 1406001 8674549 ~ 8677718 (-) False LOC122345093
TU50638 other downstream 1652144 8429700 ~ 8431575 (-) True timm8b
XR_006251099.1 other upstream 237230 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51745 other upstream 373323 10461208 ~ 10461709 (-) True G35122
TU52098 other upstream 780479 10868364 ~ 10874064 (-) True G35371
TU52116 other upstream 836042 10923927 ~ 10926163 (-) True G35384
TU52323 other upstream 1332070 11419955 ~ 11467122 (-) False hmgn7

Expression Profile