RNA id: XM_043240308.1


Basic Information

Item Value
RNA id XM_043240308.1
length 2722
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC122345826
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20700250 ~ 20703893 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTCAGTCTCACTCCCTCCCCCTCTCTCCCTAGTCTCTGTGTCTGTGCCTATAGCCTCTCTCCCCCTTTCTGTGACATACAGTAGATGGTGCATCGATTGCACACAGACGCTTGCTTTCCCTCTCGCTGGCTCAGTCCTGTGCGGGGAGGAAGAGGACGGATTGAGACGTATCTCTCTGCTTCTCAAGGTACCTTTCCTCATGCTGAGCTGCTGTGAGGAGCCTGGCCgcattctctctctcatctcgGAAGATTCTGCTATAGAGATGTCTGGTGAGAACATCCTGTCTTCTCCAGAGATCTGAAACGGGCATTATGTCTCAGCTCTTGCACATGGAGATCCCAAACCTCGGCAGCACTGTTCTGGACAGCCTGAACGAACAGCGGCTGCTGGGCCAGCACTGCGATGTGGCCATCATGGTCAACGGACAGGCCTTCAAGGCCCACCGCGCCGTTTTGGCGGCTAGCAGCCTTTACTTCCGCGACCTGTTCAGCGGAAGTGCCCAGACGCTCTTTGAGCTGCCCTCGTCCGTGGCCCCATCCTGCTTCCAGCAGATCCTGTCTTTCTGCTACACGGGCAGGATGACGGTGAGTGCCAGCGATCAGCTGATGGTCATGTACACCGCAGGCTACCTTCAGATCCAGAACATCGTAGAGCGAGGAATGGACCTCATGTTCAAGGCCAGTGCTCCATACTGCGACTCGCAGACATCTGCCACAGACGATCCCCCGAgtccaaacaacaacaactcctCCCTGTTGCTAGGCGACCAGCCCACAACTGTCTGCAAGATCAAGGAAGAGAAGCTGGAGACCCCGGTGTGTGCTCAGAACGGGGAGCTAAAGCACTCCGAGGAGGACAGGGGACCTAGGGGCAGATCTTCAAGGAATGGCACTCTTTTCTACACGAGTGGTGGCGCAAACGGGGTCATACCCGTGATGCATGCTTATGAGCACTCGTCCCGAGATCACGCCAGTCCCGGTGCCTCTAGCCTCCCGACCACAGACAGCCCAACTTCACACCAAAATGAGGAGGAAGACTTTGAAGACGACTCGTATGAGAGCCTGACAAATGGGAAGATCTTCGGCGGCTCGTCCGGGATATATAGCAGTAAATGTCTTTTACCAGACTTTTCTTTTGCCCCATTGCAACCCAAAACACTACGGATTTATCTCTGTGAGTGTGATCTGTTGTGTGTCTTCCCAGTTCAAGAGAAGATGGAGGTGTCCTCCCTTCCTCTGTCCTTGGAGAACCGTTTCTGTGTGCTGTTAGGAGGAGACAGAGAGGCTCTGCCTGCCGGACTCATCAGCCAGATCGGCTACCGCTGCCACCCTGCTCTCTACACGGAGGGCGACCCTGGAGAGAGGCTGGAGCTGATTGCAGGATCTGGTGTCTTCATGACTCGTGGGCAGCTTATGAACTGTCACCTCTGTGCTGGGGTCAAACATAAAGTCTTGCTGAGACGTCTTCTGGCTGCTTTTTTTGACAGGAACACATTGGCTGACAGCTGTGGGACTGGAATACGTTCTTCCAACTGTGATCCAAATCGCAAACCACTGGACAGTCGCATACTCAATACAGTCAAACTCTACTGTCAGAACTTTGCCCCTAACTTCAAAGAAAGTGAGATGAATGTCATTGCCGCAGACATGTGCACCAATGCCCGGAGAGTTCGCAAGCGCTGGCTCCCCAAGATCAAGTCCATGCTTCCGGAGGCGATAGAGGTGTACAGGGGTACTGCGGTCCTGAGCCAGGTGGAAGGAGCTACCCAGCCAGGCGGTGGCTTTCCCTTTGAGTCAGAGTTCAAACACCTGGCAGCGTCAAATCTGACTCTTGAGCAGCATCTCTATGGAGACTGTAGAGAGACACTGAGGAATGGCTCTCACTTCAATATGGAAGAGAGGTCCCAAAAAAGTGAAGAAGCCAAGACTGAGCCAAGCCGAGTTAAAGAGCCAGACAACCCGCAGGAAGTTGAAAGGCTACCGGAGAGTCCCGAGAGAGCGGCCAGCGTGCTCGCCCTCAACCCTGCCAGCAAGAAAGGGGAAAAAGAGCGTGCAACCAGCAGCCCCAGATCACAGAGAGAGGAACAGAGCAGACAGAGACCACTAAAAGACGATCAGTGATGTCCCCCACTTCATACTATTAAAAACTGGTCTGCAGCTTCTCACACCAAAAAGGATCATTATCAGTAAAGGCAACCTCCCATGCCACTGAACATTACATTAAAGCTGCATGATCATGGGGACTGGacatacaacatttttttccagGACAGACTGAAAAACGTCTGCATTAAATACAGTTGTGAATACAAGTTTATCTACCTCTTGAAGAATctacaaaatgtttgtttcttttaaaatagaGGGATCATAACaattgcattttagtttattactcAGCTTAAGAAGCTCTTTgaaagatatttacatttattccacaagacaaaatgattaaatttacACACCTGACCCTTTTCAAAGGTTTATATACCCTTggattttaatattgtatattgcCTCCTCAAGCATCAATGATTGTTTGTAGGTCTTTTGCGATAGTTGTGCATAAGTTTCTATTTTGTCCTGAGCAGTTAAGCTGTTCTTGAAAAAGCCTCCAGGTCCAGTAAGTTATTTggtttcccagcatgctctgcACATTTGAGTTCTTCCCTACAGTGGCTATATAATGCTGATATCCAGCTTTTCTGCTCTGGACAA

Function

GO: NA

KEGG:

id description
K10486 BTBD14; BTB/POZ domain-containing protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56356 lncRNA downstream 22320 20297308 ~ 20677930 (-) True G38161
TU56396 lncRNA downstream 31776 20667524 ~ 20668474 (-) True G38173
TU56395 lncRNA downstream 37378 20662149 ~ 20662872 (-) True G38172
TU56393 lncRNA downstream 39395 20659907 ~ 20660855 (-) True G38171
XR_006251041.1 lncRNA downstream 40779 20659094 ~ 20659471 (-) True LOC122345854
XR_006251043.1 lncRNA upstream 23501 20727394 ~ 20728862 (-) True LOC122345856
XR_006251045.1 lncRNA upstream 73810 20777703 ~ 20778572 (-) True LOC122345858
TU56449 lncRNA upstream 166252 20870145 ~ 20870357 (-) True G38217
TU56450 lncRNA upstream 181392 20885285 ~ 20886986 (-) True G38218
TU56454 lncRNA upstream 270072 20973965 ~ 20976673 (-) True G38221
XM_043240323.1 mRNA downstream 13326 20683803 ~ 20686924 (-) True LOC122345836
XM_043240333.1 mRNA downstream 18581 20679540 ~ 20681669 (-) True edf1
XM_043240336.1 mRNA downstream 21165 20677993 ~ 20679085 (-) True LOC122345848
XM_043240312.1 mRNA downstream 135929 20550970 ~ 20564321 (-) True LOC122345828
XM_043240331.1 mRNA downstream 303516 20394731 ~ 20396734 (-) True LOC122345844
XM_043240307.1 mRNA upstream 2566 20706459 ~ 20717827 (-) True qsox2
XM_043240321.1 mRNA upstream 14724 20718617 ~ 20722106 (-) False LOC122345835
XM_043240320.1 mRNA upstream 14724 20718617 ~ 20722106 (-) True LOC122345835
XM_043238394.1 mRNA upstream 18173 20722066 ~ 20726019 (-) True LOC122344820
XM_043240142.1 mRNA upstream 202150 20906043 ~ 20936097 (-) False LOC122345723
TU56325 other downstream 572860 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 644452 20051659 ~ 20055798 (-) True G38058
XR_006251078.1 other downstream 764674 19867386 ~ 19935576 (-) False kcnt1b
TU56460 other upstream 225257 20929150 ~ 20936093 (-) False LOC122345723
TU56747 other upstream 660345 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 908795 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 1105120 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 1174263 21878156 ~ 21884022 (-) False LOC122344823

Expression Profile