RNA id: XM_043240312.1


Basic Information

Item Value
RNA id XM_043240312.1
length 2437
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC122345828
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20550970 ~ 20564321 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGTGGGCGGAGGCACGGAACCAATGAGATGAGCCGGTCTGCTGAAGCTCCGTCATTACTCGCGCGAAGAGAGCAGACGGAGCAGCAGCGCGCGTCTCGGAAACCGACAGAGCTCGAGTAATTATAAAGTTCAGCACCGGATAGCGCGAGTAGACACGCCCGAGATGAATTCGCTTGCGCCGGGTGCTTTACAGGAGCACGCCGCCTCTGACAGCAGCGCGGGTTACGGTTTTCTCCTGGAATGTGTATAATGAAGGTTACCGGGAAAGAGGAGAGCAGAGATGTCGGTGCCTTTGCTGAAAATTGGAGTAGTGCTCAGCACGATGGCGATGATCACCAACTGGATGTCGCAAACCCTGCCCTCTCTAGTAGGTCTGAATAGCACCAAACTGAGCGTGGCGCCTCCGGGTGTGCCGGACCGGAGCACTGGCGTGCTTCCTGCTAACCCAGAGGAGTCGTGGCAGGTGTACAGCTCAGCTCAAGACAGTGAGGGCAGGTGTGTGTGCACCGTTGTGGCTCCTCAGCAGACCATGTGTTCACGGGATGCCAGGACCAAACAACTGAGACAGCTCCTGGAAAAAgtccaGAACATGACCCAGTCCATCCAGAATCTTGACCAGAGGACTCAGAAAGACCTGCAGTACGTGCAAAGGATGGAGGTGCAGCTGAGAGGCCTGGAATCCAAGTTCAAACAGGTGGAGGAAAGCCACAAGCAGAATATCGCCAAGCAATACAAGGCCATAAAAGCGAAAATGGAGGAACTTAGGCCAATGATACCAGTGTTGGAGGAATACAAGGCCGATGCAAAATTGGTAATGCAGTTTAAAGAGGAGGTCAAGAATCTGACATCAGTGCTAAGTGAACTGCAGGAGGAGATCGGGGCCTTTGACTACGAGGAGCTTCACAACAGGGTGTCTAATCTTGAGGAGAGGCTTcgtgcatgcatgcaaaaattaGCTTGTGGGAAACTGACAGGGATAAGTGATGCCATAACCATAAAGACATCTGGATCAAGATACGGGTCCTGGATGACTGATCCACTTGCCCCCGACGGCGATACGAGGGTGTGGTACATGGACGGTTACCACAACAACCGCTTTGGGGAATACAAGTCAATGGCCGACTTCATGTATTCAGACAACTTCACCTCACACCGCTTCCTCACCTGGTCGGGAACAGGGCAGGTGGTCTACAATGGCTCCATCTACTTCAATAAGTTCCAAAGTAACACCATCATCAAATTCGACTTCAAGACAGCCACCATCAGCAAGTCCGGTCAGCTGGATTACGCCGGCTACAACAACCGTTACCACTATTCTTGGGGTGGCCACTCCGACATTGACCTAATGGTGGACGAAGGTGGACTTTGGGCGGTATATGCCACCAATCAAAATGCAGGGAACATTGTCATCAGCAAGATCAACCCACTGACCCTGCAGGTCATCAAGAGCTACACCACCAACCACCCAAAGAGGAGCGCAGGTGAAGCCTTCATGATCTGTGGGACGCTTTATGTTACCAACGGATACTCAGGAGGGACGAAGGTCTACTATGCTTTCCATACCAACTCCTCTACTTATGAGTATATCGACATCCCATTACAGAACAAGTATTCCCATATCTCCATGCTGGATTATAACCCTAGGGACAGAGCTCTATACGCGTGGAACAATGGACACCAGGTGCTGTATAACGTCACCTTGTTCCACGTTATTCGCTCTGAGGAACTCTAAAGTGACAATCTCCATCCCTTTGTTATATACAGTAGCACTGATGGAgtttattactgaaaaaaaggGGTAATGCCtgattattgtttaataaaagaagacataaaatgtatcaaaagtaATAGTTAATGGCAACATAACGAACAGCTGCCAAAaggtcttttttcttttgtaagctTTCCTTAGATAATTGTGTTTgaattttcactgcaaaaaaatgtgttaattagtatttttgtctcatagtccagtaaaaatattgaaacgTTCTTAAAGGAGACGTTGGatgcaaaaatcacttttacatggtgtttgcatataaatgtgTCTTAGCAGTGTAAGAGAattttcatccatttttttaaatcccagaACAACCTAAACAGTCAATAGTTTTGGTGTTGATGGTAACGCGCCACcgaatacagaaaaaaacagaagagacCGGAAGAGGTGGGAGAGCAGTAGCTCTTTATCATGAACAGAGCTGTTTCTGACAAAGTAAAGAGTGTTGTTTTACACAACCTTTGAGGACTTTTTGACCAAAGTATGTAACAGACATTTCATGGAGACCCTAAGAGTAATACCAACTTGTGGAAAATGGGCATCTAATGTcccctttaaaacaaaaactatttacttttgagaagcaaaactgtaatatatatatatatatatatatagatagatagatagatagatagata

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56326 lncRNA downstream 154677 20395637 ~ 20396293 (-) False LOC122345844
TU56353 lncRNA downstream 264741 20284623 ~ 20286229 (-) True G38158
TU56349 lncRNA downstream 271869 20276668 ~ 20279101 (-) True G38156
TU56332 lncRNA downstream 390176 20155781 ~ 20160794 (-) True G38147
TU56164 lncRNA downstream 495172 20053350 ~ 20055798 (-) False G38058
XR_006251041.1 lncRNA upstream 94773 20659094 ~ 20659471 (-) True LOC122345854
TU56393 lncRNA upstream 95586 20659907 ~ 20660855 (-) True G38171
TU56395 lncRNA upstream 97828 20662149 ~ 20662872 (-) True G38172
TU56396 lncRNA upstream 103203 20667524 ~ 20668474 (-) True G38173
XR_006251043.1 lncRNA upstream 163073 20727394 ~ 20728862 (-) True LOC122345856
XM_043240331.1 mRNA downstream 154236 20394731 ~ 20396734 (-) True LOC122345844
XM_043240324.1 mRNA downstream 156417 20391686 ~ 20394553 (-) True LOC122345837
XM_043238352.1 mRNA downstream 186844 20348875 ~ 20364126 (-) True LOC122344783
XM_043238350.1 mRNA downstream 202392 20326570 ~ 20348578 (-) True LOC122344781
XM_043240311.1 mRNA downstream 226405 20320918 ~ 20324565 (-) True LOC122345827
XM_043240336.1 mRNA upstream 113672 20677993 ~ 20679085 (-) True LOC122345848
XM_043240333.1 mRNA upstream 115219 20679540 ~ 20681669 (-) True edf1
XM_043240323.1 mRNA upstream 119482 20683803 ~ 20686924 (-) True LOC122345836
XM_043240309.1 mRNA upstream 135929 20700250 ~ 20703893 (-) False LOC122345826
XM_043240308.1 mRNA upstream 135929 20700250 ~ 20703893 (-) True LOC122345826
TU56325 other downstream 423580 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 495172 20051659 ~ 20055798 (-) True G38058
XR_006251078.1 other downstream 615394 19867386 ~ 19935576 (-) False kcnt1b
TU56460 other upstream 364829 20929150 ~ 20936093 (-) False LOC122345723
TU56747 other upstream 799917 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 1048367 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 1244692 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 1313835 21878156 ~ 21884022 (-) False LOC122344823

Expression Profile