RNA id: XM_043240333.1


Basic Information

Item Value
RNA id XM_043240333.1
length 813
RNA type mRNA
GC content 0.45
exon number 5
gene id edf1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20679540 ~ 20681669 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCCGGTTTAGTTCACTAGCATAAAGAGCAGGGACGTGCCCGACAAGTTGAGCGCTCCGTTGTCGCCTAAAAATCAAACACTTCTTCAAATAATTGTCGACAACATGGCAGAGAGCGACTGGGACACCGTGACCGTTTTGAGGAAGAAGGGATCGGCCGCACAGTCGAAGTCTAAGCAGGCTATCATTACTGCTCAGAGGAAAGGAGAGGCCGTCGAGACGTCGAAGAAATGGGCTGCTggacaaaacaaacagcacgTTGTGACCAAGAACACGGCCAAGCTGGACCGAGAGACAGAGGAGCTCAGCCATCAGAGAGTGCCTCTGGAAGTGGGGAAGGTGATCCAGCAGGGCCGGCAGGATAAAGGCCTCACCCAGAAAGACCTGGCGACTAAAATCAATGAGAAGCCTCAAATCATTGCGGAGTACGAATCTGGGAAGGCCATTCCCAATAACCAAGTAATGGGGAAGATTGAGCGAGCCATTGGCCTTAAGTTGCGTGGAAAGGACATTGGGTTGCCTCTTGATTCTGGCCCTAAgaagaaatgaatacaaaatcCTCGAAAGATCCACCATTCACTGAAACCTTTCAGTACTTGTATGATCTTTACAGTTAATCTTTATTAATTGCTGCATTACTTCATATTTTCTCGATTCAATGGTGGATCAGACGCACTCATATTGCCACCTACACAGAAGGCTTATTATCTAACGTTTTATGTCAGATGATGAAGACTtggaattataattttttttttttttttttttttagcctgctcactgctttgaaataaaaacttatttctATGTCTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K03627 MBF1; putative transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56356 lncRNA downstream 1610 20297308 ~ 20677930 (-) True G38161
TU56396 lncRNA downstream 11066 20667524 ~ 20668474 (-) True G38173
TU56395 lncRNA downstream 16668 20662149 ~ 20662872 (-) True G38172
TU56393 lncRNA downstream 18685 20659907 ~ 20660855 (-) True G38171
XR_006251041.1 lncRNA downstream 20069 20659094 ~ 20659471 (-) True LOC122345854
XR_006251043.1 lncRNA upstream 45725 20727394 ~ 20728862 (-) True LOC122345856
XR_006251045.1 lncRNA upstream 96034 20777703 ~ 20778572 (-) True LOC122345858
TU56449 lncRNA upstream 188476 20870145 ~ 20870357 (-) True G38217
TU56450 lncRNA upstream 203616 20885285 ~ 20886986 (-) True G38218
TU56454 lncRNA upstream 292296 20973965 ~ 20976673 (-) True G38221
XM_043240336.1 mRNA downstream 455 20677993 ~ 20679085 (-) True LOC122345848
XM_043240312.1 mRNA downstream 115219 20550970 ~ 20564321 (-) True LOC122345828
XM_043240331.1 mRNA downstream 282806 20394731 ~ 20396734 (-) True LOC122345844
XM_043240324.1 mRNA downstream 284987 20391686 ~ 20394553 (-) True LOC122345837
XM_043238352.1 mRNA downstream 315414 20348875 ~ 20364126 (-) True LOC122344783
XM_043240323.1 mRNA upstream 2134 20683803 ~ 20686924 (-) True LOC122345836
XM_043240309.1 mRNA upstream 18581 20700250 ~ 20703893 (-) False LOC122345826
XM_043240308.1 mRNA upstream 18581 20700250 ~ 20703893 (-) True LOC122345826
XM_043240310.1 mRNA upstream 18581 20700250 ~ 20703891 (-) False LOC122345826
XM_043240307.1 mRNA upstream 24790 20706459 ~ 20717827 (-) True qsox2
TU56325 other downstream 552150 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 623742 20051659 ~ 20055798 (-) True G38058
XR_006251078.1 other downstream 743964 19867386 ~ 19935576 (-) False kcnt1b
TU56460 other upstream 247481 20929150 ~ 20936093 (-) False LOC122345723
TU56747 other upstream 682569 21364238 ~ 21369048 (-) True G38359
TU56743 other upstream 931019 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 1127344 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 1196487 21878156 ~ 21884022 (-) False LOC122344823

Expression Profile