RNA id: XM_043240352.1


Basic Information

Item Value
RNA id XM_043240352.1
length 1926
RNA type mRNA
GC content 0.43
exon number 14
gene id hmbsa
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8203420 ~ 8210189 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTTCTTGGTAGACGGAAGTATCGCTCCCGTCTAGGTCACGCAAAAATCGGGTCACGAGTTTGAGGTAGCTGTTGGGAATTCTCGAAACCATCCGTTCAACCAAAACAACTGTGCAAATGAGTGAAAAATCCTGACGATATAGGTCGGGGAACAGATCGTTCCACTTTAACAGCGGAGATGTCTGGGAACGTTAGTGCTTCTCAAGAAGGAAATGGCAATGTCAGTCGGGTTATTCGCATGGGAACAAGGAAGAGCCAGctGGCTCGCATTCAGACAGACAGCGTGGCCGGCACCCTGAAAGAGCTTTATCCAGATGTTCATCTAGAAATAGTTGCCATGTCTACAATTGGGGACAAAATCCTGGACACCGCATTATCAAAGATTGGCGAAAAGAGCCTCTTTACCAAAGAGCTGGAGAATGCACTCGAGAGGAATGAAGTGGATATTGTGGTGCACTCTCTTAAGGATTTACCTACCTCATTGCCTCCTGGATTCACTATTGGAGCCATTCTTCAGAGAGAAAATCCCCATGATGCAGTGGTGCTTCATCCAAAGAATGCTGGACTTACCCTAGACAGCTTGCCAGAGAAGAGtgtgattGGCACAAGTTCACTTCGAAGAGCAGCTCAGCTGAAGAAACGATTCCCTCAACTAGAGTTTGAAAATATTAGAGGGAACCTAAACACCCGTCTGAAGAAGCTGGATGAAAAGGATGACTACGCTGCCATTATTCTGGCTGCAGCGGGCCTTAAACGTATGGGATGGGAAAGCAGAATCAGTCAGATTCTGGGCCCCGAAGATTGCATGTATGCTGTTGGGCAAGGAGCACTGGCAGTGGAAGTCAGAGCACAAGATAAAGACATCCTGGAAATGGTGTCTGTCTTGCACCATCCAGACACAGTGCTGCGGTGCATCTCAGAGAGAGCTTTCCTCAAGCAGCTTGAAGGAGGCTGCAGTGTGCCCGTTGCTGTGCATACAGAAGTGAAAGGGTCCATGCTATATTTGACTGGAGCAGTTTATAGTTTGGATGGAGCTGATTGCTTGAAGGACACTATGCAAACGGTTGTGGAAATCAGCAACAAAGTGAGCGAGAGTGCACAGGAGTGTGTACACGTTGGAGTCACTGCCAACAACGTATCATCGTCGGCCCTTGATGCTGCGGAGAACCTGGGAATGGATCTGGCAAATGCTCTCCTTAACAAGGGGGCCAAAGACATTCTCACAACTGCCAGGAAACTAAATGATGCTCGCTAGCTGGCTTTTACACTTTGTGCACTGGAGTATTAGGCCTAATTTTGGAACCTTTGACATGCTGTTAACTTAACTTAAACTGTACACCTCAACTATATGCTCTGTAGCTGAATCTCTAGAGCTTAAATACAACCTTGATTGGCTGTGTAATCTGTGACTAAAAACAACTTCAGATACTATACCTCAGTGCCTCAGTTTAACAATGTGGCAGCTTTAGGTTTTTTTCTCAGCTGCATACACAAGACATTTCTACTGTTGTGACTATTGTATTGTCTCAGGCACCGATTTCTGGAAGAATTCATGCTTCCACTTATGATGTCAGACTGCTGTCTTCATCTATGAACCACTTGAAAAGGAGTTACTTTTCATATATtgccattgtttttaatgtagaactgaatatatttgatatgcaaggcatttttatttaacagcatatcctcagtttttaaaacataccatgcctttttaaatacagagtaTCTATTGATGAGAAACCAAGAGTTTGaatttggaaaaaagaaaattaagaaattacttggttttatatttatgcCGTAGTTTTCATCCCACAATGTGCCTTTAAGGTTTTAATTAACCAATCAATTGTTTCTAGAATGTTAACTTCTgcaattatcaaaaataaactgATCCCATTATTCCCTTCCCTCCA

Function

GO:

id name namespace
GO:0018160 peptidyl-pyrromethane cofactor linkage biological_process
GO:0033014 tetrapyrrole biosynthetic process biological_process
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50544 lncRNA downstream 3338 8199230 ~ 8200082 (-) True G34310
TU50532 lncRNA downstream 41644 8160877 ~ 8161776 (-) False si:ch211-117m20.4
TU50512 lncRNA downstream 102720 8100486 ~ 8100700 (-) True G34290
TU50498 lncRNA downstream 189483 8013686 ~ 8013937 (-) True G34276
TU50497 lncRNA downstream 189869 8013347 ~ 8013551 (-) True G34275
TU50543 lncRNA upstream 6775 8216963 ~ 8218476 (-) True G34309
TU50549 lncRNA upstream 45671 8255859 ~ 8262919 (-) True G34315
TU50577 lncRNA upstream 56905 8267093 ~ 8270648 (-) True G34332
TU50581 lncRNA upstream 79711 8289899 ~ 8290183 (-) True G34336
TU50637 lncRNA upstream 211334 8421522 ~ 8425502 (-) True G34374
XM_043240285.1 mRNA downstream 28063 8171423 ~ 8175357 (-) True dpagt1
XM_043240284.1 mRNA downstream 28522 8171423 ~ 8174898 (-) False dpagt1
XM_043240281.1 mRNA downstream 32828 8164171 ~ 8170592 (-) False LOC122345805
XM_043238357.1 mRNA upstream 61761 8271949 ~ 8282158 (-) False stk36
XM_043238356.1 mRNA upstream 61761 8271949 ~ 8282157 (-) True stk36
XM_043238627.1 mRNA upstream 72204 8282392 ~ 8287689 (-) True c5h11orf53
XM_043239799.1 mRNA upstream 159384 8369572 ~ 8386394 (-) True adamts15a
XM_043240774.1 mRNA upstream 220403 8430591 ~ 8431586 (-) False timm8b
TU50440 other downstream 481957 7719696 ~ 7721463 (-) False si:dkey-220k22.3
TU50081 other downstream 806267 7382346 ~ 7397153 (-) True G33998
XR_006251118.1 other downstream 1080956 7122339 ~ 7122464 (-) True LOC122346223
XR_006251117.1 other downstream 1081571 7121722 ~ 7121849 (-) True LOC122346221
XR_006251012.1 other downstream 1260217 6930872 ~ 6943203 (-) False usp20
TU50633 other upstream 201694 8411882 ~ 8414806 (-) True G34372
TU50638 other upstream 219512 8429700 ~ 8431575 (-) True timm8b
TU50888 other upstream 464361 8674549 ~ 8677718 (-) False LOC122345093
TU50964 other upstream 719282 8929470 ~ 8930053 (-) True G34580
TU51091 other upstream 1005320 9215508 ~ 9220507 (-) False vamp5

Expression Profile