RNA id: XM_043240356.1


Basic Information

Item Value
RNA id XM_043240356.1
length 3942
RNA type mRNA
GC content 0.38
exon number 4
gene id dnajb5
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15480180 ~ 15493670 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGTGGAGGGGTTAGGGGCGGGGTTAACGGAATGGAGTAGAATGTCATGCAGCTCTAACCGGCAGACAGCTAAAGGATACTTTGATACGAAAGTTTGGACGTTCTGGAACTCTGGACTCTATCTGTAAATCAAAGCCATGGGGAAGGATTACTATAAGATCCTTGGCATAACGTCAGGCTCTAATGAAGATGAAATCAAAAAGGCCTATAGAAGGATGGCCCTAAAGTTCCATCCAGACAAAAACAAGGATCCCAATGCTGAAGAGAAGTTTAAAGAGATAGCAGAGGCTTATGAGGTTCTGAGTGACCCAAAGAAGAGAGTCATCTATGATCAATACGGCGAGGACGGTTTGAAAACAGGTGGCACAGGCTCATCTAGTGGACAGGGGACTACATATCACTACACCTTTCATGGGGATCCACATGCCACCTTTGCTTCTTTCTTTGGAGGCTCCAACCCCTTCGATATATTCTTTGGTTCTGGACGCCAACGGGGAACCACCAATGGCACTAATGACCATAGTGGTGATCATGACATGGACATTGACATGGATGGAGATGATGATCCTTTCAGCTCCTTTAGCCACTTTGGCTTCAATGGTATCAATGGTTTTCATCACGGTGGAGGTCGAAGACATCGTAATGAGCCCCTTCATGGTGGCCGGAGGAAAGTACAGGACCCTCCAGTGGTACATGAGCTTAAAGTGTCTCTAGAAGAGATCTTCCATGGATGTACCAAGCGGATGCGAATCACTCGCCGAAGACTGAACCCAGATGGAAGGACAATGAGGACAGAGGACAAGATCCTTAACATTGTCATCAAGAGAGGCTGGAAGGAAGGGACCAAGATCACCTTTCCCAAAGAAGGTGATGAGACGCCTGAGAACATTCCTGCTGATATTGCATTTGTGCTCAAAGACAAAGGGCACCCTCTCTTCAAAAGAGATGGATCCAACATCATTtacacagccaagattggtcTTAAGGAGGCGTTGTGTGGCTGTACAGTGAACATTCCCACCATTGACAACCGAGCGATCACATTGCCCTGCAGCGATATCATCAAACCAGGCACAATCAAGAGACTGCGTGGAGAAGGCCTACCTTTCCCAAAAAATCCGTCTCAGCGTGGGGATTTGATAGTGGAGTTCCAGGTGCGCTTCCCAGACAGAATACCACCTCAGTCCAGAGAGATCATCAAACAGCACCTACCACAGTCTTAGAGGAAGTTCAGTGGATTCCCTGTAAAACACACCGTTTTCCCCAAACAAACAGATACTGAATTCGAAGAGGGACAAATATGTCGTAAGGACCAGAGGctcatttgatattttgttacaGTTTTACCTAATTTATTATCACTTTCTCTGAACATTTggaaagctgatttttttggGATGTTGAAGTAGTTTGTGTTCATGCCGAGGCTCATGACTTTCAACTAggatattattttaagaattatttttattttattattattttcccttAACGGTTTTTATCCTCTTCTATCAACATGTCGAAGGCAAACATTTACAAGAAAGGCAGAAAGACTGATTTGTTGGATGGTAGGTTAATATATTTGGTGTAATGACGGACACGAGGATCATCCAACAACAGCTGGCTATTTATTCTGGATTTGAATCTGTTATTTTGTAGCAGATTAAATTCCTTTCCCTTGTAataatctcattttaaatgaagtgatAAGACAACTTGCCAGTGTTGGAGACTTTTGGATTTTTAGGATTTTTGAGCACCAGCAGAGCCATTTGGTAACTATTTGATATATTTCAACTCCCTCACGTATCTCAGCAGTCTACAGGTATCTATGGTGGTGTGATTGCAGGATTTTTGAGGTCACAGAAATTTTGAGTGCCTTAATGTGGCTCAAACCAGCTATTTTAGTTTCATAAGTGAAGAGCTTAGGCTATTGttgaaaaatactgtaattacagtaatttgcCATTTCAGTACCCAAAAGCAATGTATGGCAGTAACCATCATTttagggatagtttacccaaaaaggATAAATTGGAAGGAATAATGCAGTAATCTTCATGgtgctcttaaagggatagttgatcaaaaaatgaaaattcggtcattatttactcaccctcgttcCAAACACGTAAGACATTCATTCATCTcaggaacacaaattaagatattttctttaaatacaagAGCTTTCTAACCCTGCATAGAATGAAAGGGTGCTCCCACGATCTAGGCTCAGAAATGTAGTATGaagatataaaattaaaatggctcatgtgacatcagtggttcaaccgtaatttttatgaagctacaagaacacattttgtatgcaaagaaagcaaaatgaACTCCTTGCTATATTTCTGAGCCTTAATCACGTAAGGACCCTTGCtatctatggagggtcagaaagctcccGGACttcattaaaactattttaatttgtgctctAAAGATGAACGCAGGTCTTAAGAATCAaaagagggtgagtaattaatgacagaatttagatttttttgattttgattattcTATCCCGttaatatataatgtcataATGTTTGTGTGGTACACATGAGGAGTTAACTAGCAGAATATCTAGGCTGTTTTTCCAAACAATGGAAAGTAGACAATGACtttgaagctaaaaaaagattaaaaatactatattataaaGTGGAGGATAGtcttccctttctctctctctctctctcgcgctctctctcgctcgctcacacacacacacacttttaatttaataaggTGCAAAGGGAAAAGaaactataaaaacatcacCATAGGCAGTATCTTATGTAGCCAAGTTATATCCTAGGTTACATATTTGACACATCACATGGATCATATACAAAGCAAAAAACTTTGACCTAGAATATCTAGTATAAAAATGGTCAGACTTGGTCTGACAAATAGTCCTTGCTGAGagttttttgttattaacaTTATGTTATTAACTGAGAGCAGGAAAATTTCAGTGAATAACAAATTCTTTGAATAATGAATTCTGGTCTGTTCCAGTGTCAGGTTGTTCTGTGAAAGTTTGCCAGCTGATCACAaatcactttcattgtatgaaaATGAACAGCCTCAATAACACATTttgtatatcatttaaaatatcatttaagcaacataattttaaataaatgattgggGAGGGATAGCTATTGAAAAATGCTCATTTACTTCACTATAAACACCATCCCACACGTTAAAAGAAACCCAAACACTGAAGTTGAAAAGACCATATTTAATCCGatatgaaaaagtaaatataaaaattaaagggAGAACTGTGAtgttaagtgttttcttttatgaaaGGCAGTCCTTTATTGTTCAGTAAGCACAGCTATAGCTTTTTTATGAAGTTATGAGGGAACTGTTTTTTTGAACCGCTTTTTACTACAACCGTTTCAGTATACTGTATTTCACACTTTTAAATGTGTGCAATGTGAAATCATTTGCAATAGTTCTCTGTATTTTAGTTTAGATTTATATAAAGTGCAAAGCCTCCCTTTCAGTTGATTTGTGATGTACCATCTTTCTATAGTAACAGCAGCCTTTGAGAAACCGTATTTTCTATATAAACAACAATTTTCATATTTCCAAGGATCCTTGCAGGATTTCTCTTACACAGTCATAACTGTTATTTAATACTTGCTGTATTTGGTGATGAAATGAAAGTATGGAGGAACATAACCTTTTTAATgtcatgttgttttattatgtgcTGGTGTATGATTGGATTGTTGTACCATTGTACTCAACAGACTTTTGGACATCCAGCCACTtctgttttgaatttgaatgtcaACTTTAAAATGTCTCATGTTTATTACTTCTGTCCTCATGTATGAGACAGTATTAAATGCAGCTCCCTGCACCCAATGGGAGGATAAATCAATGCAGAA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54241 lncRNA downstream 310822 15169047 ~ 15169358 (-) True G36811
TU54112 lncRNA downstream 574559 14905385 ~ 14905621 (-) True G36714
TU54099 lncRNA downstream 599115 14880865 ~ 14881065 (-) True G36708
TU54076 lncRNA downstream 781227 14698736 ~ 14698953 (-) True G36696
TU54002 lncRNA downstream 827787 14652095 ~ 14652393 (-) True G36631
TU54472 lncRNA upstream 68052 15561722 ~ 15562078 (-) True G36967
TU54473 lncRNA upstream 68478 15562148 ~ 15562363 (-) True G36968
TU54475 lncRNA upstream 70428 15564098 ~ 15565262 (-) True G36969
TU54502 lncRNA upstream 210082 15703752 ~ 15709388 (-) False cenpv
TU54544 lncRNA upstream 220005 15713675 ~ 15713975 (-) True G36986
XM_043239300.1 mRNA downstream 3107 15472092 ~ 15477073 (-) False akr1a1a
XM_043239301.1 mRNA downstream 3107 15472092 ~ 15477073 (-) True akr1a1a
XM_043238413.1 mRNA downstream 22809 15451024 ~ 15457371 (-) True eef2l2
XM_043240656.1 mRNA downstream 112767 15350016 ~ 15367413 (-) False npr3
XM_043240654.1 mRNA downstream 112767 15350016 ~ 15367413 (-) True npr3
XM_043239504.1 mRNA upstream 12296 15505966 ~ 15529346 (-) True epg5
XM_043238806.1 mRNA upstream 36404 15530074 ~ 15534492 (-) True riok2
XM_043238805.1 mRNA upstream 41024 15534694 ~ 15554686 (-) False atxn2
XM_043238802.1 mRNA upstream 41024 15534694 ~ 15554686 (-) False atxn2
XM_043238801.1 mRNA upstream 41024 15534694 ~ 15554686 (-) False atxn2
XR_006251075.1 other downstream 112767 15350016 ~ 15367413 (-) False npr3
XR_006250970.1 other downstream 171740 15296018 ~ 15308440 (-) False zfr
XR_006251010.1 other downstream 215235 15205951 ~ 15264945 (-) False pdzd2
TU53907 other downstream 1177799 14292063 ~ 14302381 (-) True LOC122345141
XR_006250967.1 other downstream 1423475 14045477 ~ 14056705 (-) True rnf214
TU54482 other upstream 79441 15573111 ~ 15574817 (-) False alkbh2
TU54484 other upstream 79588 15573258 ~ 15574817 (-) False alkbh2
TU54499 other upstream 210082 15703752 ~ 15709388 (-) True cenpv
TU54667 other upstream 231357 15725027 ~ 15727910 (-) True emc6
TU54666 other upstream 233112 15726782 ~ 15727910 (-) False emc6

Expression Profile