RNA id: XM_043240361.1


Basic Information

Item Value
RNA id XM_043240361.1
length 1569
RNA type mRNA
GC content 0.43
exon number 4
gene id si:dkey-174n20.1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12510566 ~ 12513965 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTACGTGGCTAAAGGCTACAGGATCAGTCTGCAAACATAGTCTTCTGCAtcacgtttttaaaatgaacggTCCTTGAAACCAAATGAACAATTGCATGCTATATTTTCCTTTGAATGGGCTAAAGGTGTGAGCTAAAAAGCGGCGTTAGCTTGCTAGAGGTCAGTTTGTCTTGTGCTGGTTTACAGGCTAGCAGAAAATGTACctgttatacattatattttccgcacttttgtgctttttgatattaaaatggcTGAAACGGAGAAAGTATTGCATGGACGTGAAGAGGTTAGATGGAAAAACGGTTCTTATAACTGGTGGGAACGCTGGGATCGGGAAGGAGACGGCTGTGTTGCTGGCTTTGCGAGGAGCTCGCGTGATCGTCGCCTGCAGGGATGAGGAGAAAGCCAGGAAAGCCGTTCGAGAGATCAAAGCAAGGAGCCACAATATGAATGTGCTGTATATGGAGGTCGACCTGGCCAACATGAGGTCTATACGAGAGTTCAGCAAAGCCTTCTTACAAAAGGAGAAGCGGCTGGATATTCTGATCAATAATGCGGGCATGCCCAGCGTCCTCGACTGGACAGATGATGATTTCTCCATGTGCTTTGGTGTTAACCACCTTGGCCACTTCTTACTGACCAACCTTCTTCTCCCACGGCTAAAAGAGAGTTCACCGAGCAGAGTAATAAATCTCACCTGCTCCAGCTACAAGTACCAGAAGCTGGACTTCCAAGATCTCAACTACAACCTGTTTCCGTTCTTCACCTACTGCCGCAGCAAGCTGGCCAACATTTACTTCACACAGGAGCTCGCTCGCATGCTGGAGGGGAAAGGAGTGACAGCGTATGCCGTTCACCCtgGTTACGTTCAGAGTAACTGGACCTGCCACTACTCCGTCTTGTTCCGGATCCTGGTGCAGGTGGtgatgttcatgttttttgtttcgTGCGAGGCTGGGGCACAGACGGTGGTCTACTGCGCCGTGTCAGACGACGTGCTCGAGCACAACGGAGGATATTTCACTGATTGTCAGCCGGCTCACCTTAGAGCTTTTGCTAGAGATTCTGGAGTAGCAAAAAAACTTTGGGAGGCCAGCGAGAGACTAGTTAAATTGGCCTGACAACAGTTAACAGtgctttttgtttgcatgtttgaTAAAACAGATTCTCATGTTATTTATAGAAAGCCATGTTTTGGTTTGTAAGAATGCGATATTTATGACACATTTTGTGTGAGTTGTATGtgctgttatttatataatgattgGCATGGTTTTTAACATGCAGTATCGAATTACCCTTGTTttcatcaaatgtttttaattagtaaagaATGTAAATTGGTCACCGCAAATTCCATTTAAGATGGAGGGTAgctatttataaatgcaaactAATCAAAGCCTGAAAGCAAACAAATCTAGCAGAATTACAAAGGTTCTATTAATGCATTTGTCttatgcttttatccaaagcaatttacatttaattttgcattcatttgagCGCTCCATGTCAAAGTTGaaatttttcacacaaaaaaataaatacaaaggaaAAACCA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0004022 alcohol dehydrogenase (NAD+) activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52943 lncRNA downstream 570 12463906 ~ 12509996 (-) True G35928
TU52931 lncRNA downstream 59801 12448214 ~ 12450765 (-) True G35923
TU52930 lncRNA downstream 65346 12443787 ~ 12445220 (-) True G35922
TU52729 lncRNA downstream 253754 12255480 ~ 12256812 (-) True G35812
TU52722 lncRNA downstream 261858 12226918 ~ 12248708 (-) True G35805
TU52974 lncRNA upstream 18425 12532390 ~ 12537802 (-) True G35949
XR_006250996.1 lncRNA upstream 88251 12602216 ~ 12606938 (-) True LOC122345380
TU53008 lncRNA upstream 123225 12637190 ~ 12639377 (-) True G35966
XR_006251055.1 lncRNA upstream 366096 12880061 ~ 12884157 (-) True LOC122345905
TU53066 lncRNA upstream 399661 12913626 ~ 12916013 (-) True G36004
XM_043238310.1 mRNA downstream 82184 12412341 ~ 12428382 (-) True hs3st1l2
XM_043239593.1 mRNA downstream 100898 12396282 ~ 12409668 (-) True cds2
XM_043239594.1 mRNA downstream 116524 12381364 ~ 12394042 (-) True arhgap25
XM_043239263.1 mRNA downstream 146851 12356836 ~ 12363715 (-) True LOC122345273
XM_043238180.1 mRNA downstream 236928 12272217 ~ 12273638 (-) True LOC122344659
XM_043238504.1 mRNA upstream 26319 12540284 ~ 12560679 (-) True limk2
XM_043239479.1 mRNA upstream 126412 12640377 ~ 12642522 (-) True LOC122345379
XM_043239478.1 mRNA upstream 128691 12642656 ~ 12644497 (-) True cmklr1
XM_043240346.1 mRNA upstream 154985 12668950 ~ 12673658 (-) True LOC122345863
XM_043240345.1 mRNA upstream 154985 12668950 ~ 12673312 (-) False LOC122345863
TU52956 other downstream 4608 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 190881 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 341239 12165410 ~ 12169327 (-) False sh2d1aa
TU52507 other downstream 694756 11801314 ~ 11815810 (-) False msna
TU52344 other downstream 857939 11583780 ~ 11652627 (-) True G35554
TU53125 other upstream 539879 13053844 ~ 13054857 (-) True G36047
unassigned_transcript_955 other upstream 861664 13375629 ~ 13375700 (-) True trnap-agg_13
TU53374 other upstream 1065096 13579061 ~ 13582241 (-) True h3f3c
XR_006250976.1 other upstream 1145112 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other upstream 1146009 13659974 ~ 13699226 (-) False lrch2

Expression Profile