RNA id: XM_043240362.1


Basic Information

Item Value
RNA id XM_043240362.1
length 3111
RNA type mRNA
GC content 0.41
exon number 6
gene id fsta
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15016899 ~ 15023456 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGCCTTCATTCAGCACTGCCTGAGTAAGAAGATTACTTTTGCACGGCTCGTCTAGATACTCTTTCTCTGTTTCAACATGCTAAGGATGCTAAAGCGCCAGCAGCTCCACCcgggaatgattttattactCTTATGGCTCTGTTATTTGATTGAAGATCAAAAAGTGCAAGCTGGTAACTGCTGGCTCCAGCAAGGCAAGAACGGAAGATGTCAGGTCCTCTACATGCCTGGGATGAGTCGAGAGGAATGCTGCCGGAGTGGGAGGCTCGGTACGTCTTGGACCGAGGAAGATGTGCCAAACAGCACATTATTCAGGTGGATGATCTTCAATGGCGGGGCTCCAAACTGCATACCTTGTAAAGAGACATGTGATAATGTGGACTGTGGCCCTGGgaagaaatgcaaaatgaacAGGAGGAGCAAGCCTCGCTGCGTCTGCGCCCCGGACTGCTCCAACATCACCTGGAAGGGGCCCGTGTGCGGCTCAGACGGGAAGACGTACCGGGATGAATGTGCCCTTTTGAAATCCAAATGCAAAGGGCACCCGGATCTGGAGGTGCAGTACCAAGGCAAATGCAAAAAGACGTGTCGTGATGTCATGTGTCCGGGAATCTCGACTTGCGTGGTGGACCAGACAAACAACGCATACTGCGTGACATGCAACCGCATATGCCCAGAGGTTTCGTCTCCGGATCAGTACCTGTGCGGCAACGACGGGATTGTTTACGCCAGCGCGTGCCATTTGAGGAGAGCCACGTGCTTGCTTGGTAGATCCATTGGAGTGGCGTATGAAGGGAAATGCATCAAGGCCAAGTCGTGTGACGACATCCAGTGCAGCGCAGGGAAGAAGTGTCAGTGGGATTCCAAGATGGGTCGCGGGCGCTGCGCCGTTTGCATAGAGACGTGCCCAGAAAGTCGATCGGAGGAGGCCGTGTGCGCCAGCGACAACACCACGTATCCCAGCGAGTGCGCCATGAAGCAGGCCGCTTGCTCTTTGGGGGTTCTCCTGGAGGTTAAGCATTCAGGATCTTGCAACTCCATTACTGAAGACCAGGAGGATGATGACGATGAGGACGACCAGGACTACATGGCTTATGTCCAATTATCACCTGTACTGGATGGATAAAGCACCATCAACCAGTGGAACAGTCCTAGGGCAAGGAATCATGTCCACACTGTACATATGTGtatgctaatttatttttcagagaaaaaagaaagaagtatACATGTAGTTCAGTCTGCTCgatgtttatttatacagtgttctgttttataatttatacatttacagtgTCTGGCTTACTTGTCTAtcatgttattttgttttcacttatgttgtctttcctttttttttttttttttttttattatgaccGAGAAATATATTTGTCCAAAGAGAAGCAGTGTTATTTATTGTGAGGTAAAATGCTATCATGTAAAGTGTGAGTCTTCTGCAAGCTGTAAATTGCATTCCCTGAGCTGTATAAACGCTTATCAGTGTCAATTCTGTATCACAGATGTTTATTTCACACATACTTGCATGTTAGcttgtgaatttatttattggaaaaaaaatggaaacgcataggaaaaaaaaaaaaaaaaaagtcactctttaatgtacatgtatatttttggttttgtttacagCTCAGTGTAACTGACCAAAGGGATTTTTCTTGAACGTTCTTCAATGTTTTTGTGATACGGTGCAGCAGGATAACATTGAAAATGAGCCGTTTCTCATATAGGAAAACCCCTGGTGATTCACTTGTACAAAATGCCGTCCTTCATCAACAGCAACAGTTTGACTTTTTGACAATAGGGCAGAAAAAGCAGTGGGTTATACTTGTTCGAGAAAACTGTGCCATGcaactttgtctttttttttttttttttttttttcttgccaaTATTCTGCTCTATATTGCTCTTGCGGAGCTAAAGAAAAGGTCATTAAGAGGACTCAGtatcaatatataaaacattcactttttcactgttttcactttgtcaaaatgcatttttattttcagacatctcaagataaaaaacaaaattcagttataaatatatagttttgtattttttatgtaaatgtcatatgtatatacaaagtTTGATGTATTTGTACAGATATTAAGagtgaaatcaataaaaaaaaatacttatcaAATGGTCACTGTGGTGTGGATATTATTAAGAACTGAGTTTTGCCGTTCACCCATCCATTTATTATTCTTCTCGTTATTTTGTAAGTAAATCAAAGCACCCTGGCTCCATTGCTTAAGCCTTAAAGGCGTtttataaaacgtttttaactGTCATTCTGAACCTACTgccaaaaaactattttttttagaactACATCACCATCGAGCCAAAATATTCCCATAAGGACATGACTTTAACTTTAGGCTTCTATCTCTTACAATCAGTTGTTAAACTCTCTACAAAGCTTGTTTTTACAGACAAACAGGTTCTCTTTTCACTCAGTTACTAGTGACAAAAATCAATCAAACACACAAGCCTGCTCTATAGCgataaagctgaaatttcacTGCATTAGTCTGACCTCACACTGCACTTTCCTAATATGCAAAGCTCCTCGTGAAGTTATCTGGTGCAGCTTTGCTCTGTTCTCCGTTTCtgaaacaaatgtataaaatcacACAGGACTTTATAAGGAGACGGTTTAACGTCCAGATCAATTGGGTTAACACTGTCACGTCAATAACTCATTCTGACTTTAAAGACTTAAAACATGAACCAGGTTTTAATGGTTCCAGGCAGTGATGTAAAATGAACATGGAAAGTGTAGTACCAGACTGTGCTAATGTGCTAGCAGAGATGACAGAGTAAAAACGGTCACTGCTTTTTCAATTGAAAGTCATTTGAAGTAGGCAGGTGTTTTACTCATCTGGGCTCATCCCTGGAGGAGCATGAGAGTAAACATATCTAACCGCGTTCGGTCTTTGAAGCTTGACATTTACCTCATCCTCCCGTTTCAGAAACATTAACACTAAACTGTCTTCAAGAGGGTTTGGAGGGTAGAAAAACGAACCACCTGACAAGAAGAATTATTTTCTGAGGAAACAGAGACATT

Function

GO:

id name namespace
GO:0043049 otic placode formation biological_process
GO:0048263 determination of dorsal identity biological_process
GO:0009994 oocyte differentiation biological_process
GO:0030901 midbrain development biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54112 lncRNA downstream 111278 14905385 ~ 14905621 (-) True G36714
TU54099 lncRNA downstream 135834 14880865 ~ 14881065 (-) True G36708
TU54076 lncRNA downstream 317946 14698736 ~ 14698953 (-) True G36696
TU54002 lncRNA downstream 364506 14652095 ~ 14652393 (-) True G36631
TU53966 lncRNA downstream 528171 14485814 ~ 14488728 (-) True G36602
TU54241 lncRNA upstream 145591 15169047 ~ 15169358 (-) True G36811
TU54472 lncRNA upstream 538266 15561722 ~ 15562078 (-) True G36967
TU54473 lncRNA upstream 538692 15562148 ~ 15562363 (-) True G36968
TU54475 lncRNA upstream 540642 15564098 ~ 15565262 (-) True G36969
TU54502 lncRNA upstream 680296 15703752 ~ 15709388 (-) False cenpv
XM_043239467.1 mRNA downstream 96960 14918926 ~ 14919939 (-) True hspb3
XM_043239465.1 mRNA downstream 99135 14906584 ~ 14917764 (-) True snx18a
XM_043240090.1 mRNA downstream 136826 14876022 ~ 14880073 (-) True si:dkey-193c22.1
XM_043240083.1 mRNA downstream 144574 14812557 ~ 14872325 (-) False wdfy3
XM_043238533.1 mRNA upstream 98540 15121996 ~ 15128172 (-) True isl1a
XM_043238532.1 mRNA upstream 98544 15122000 ~ 15128172 (-) False isl1a
XM_043239109.1 mRNA upstream 150932 15174388 ~ 15199837 (-) True parp8
XM_043239110.1 mRNA upstream 150932 15174388 ~ 15190645 (-) False parp8
XM_043239713.1 mRNA upstream 182495 15205951 ~ 15264945 (-) True pdzd2
TU53907 other downstream 714518 14292063 ~ 14302381 (-) True LOC122345141
XR_006250968.1 other downstream 960194 14045477 ~ 14056705 (-) False rnf214
XR_006250967.1 other downstream 960194 14045477 ~ 14056705 (-) True rnf214
XR_006251003.1 other downstream 1007363 14001934 ~ 14009536 (-) False tmprss13b
XR_006251010.1 other upstream 182495 15205951 ~ 15264945 (-) False pdzd2
XR_006250970.1 other upstream 272562 15296018 ~ 15308440 (-) False zfr
XR_006251075.1 other upstream 326560 15350016 ~ 15367413 (-) False npr3
TU54482 other upstream 549655 15573111 ~ 15574817 (-) False alkbh2
TU54484 other upstream 549802 15573258 ~ 15574817 (-) False alkbh2

Expression Profile