RNA id: XM_043240381.1


Basic Information

Item Value
RNA id XM_043240381.1
length 6905
RNA type mRNA
GC content 0.46
exon number 4
gene id nexmifa
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11389320 ~ 11399607 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCAGCGCGCCGCCGTGCGAAATATGGGGGCGCGCTCTTTATGGCAGGTCTCAAAAGAGGGGGAGCAGCAGCGCACGAGCGCGCCGTCGTTGTCAGGGACGGACGGGGTACAGCTGGGAAAAACACATCCTCACGCACGCACACCCCCGTCTCCGTTACGCACGTACAtaaggcaaaaacaaaagcgACTCTAAAGGAGGAGAGAGCGGAGCGCGAGCATGCGGCGAGGAGCAGGCGCTGCAGCAGACCTTTGTTTGTTTCCTGGAAACCCTGGAGCGCGAGGGAATAAAATGGAGTGGTAAGGGGCTCCGAGGCGCGAGAGGCGCGTCCACCTGCTGCTACCGGGGAGGCAGTCAGAGAGGGCAAACATGCTGAGACCGCTGCATTGAAGGGGGTTacgaaaacaacaacaacaactgcgTATGACAACATTCTGCACGCCGAGCGATCAAACGGAGTCTTTAAAGCGGGCGGGACGGGTGTAACGGGAGGCTGGACAGTTGTAATTATGTTAGTGAGAGAGAGATTCAGTTCAGACTGATGGATGTTCTACAGGAGTCCCGATACTCAGGGGCAGATCGCAGCCCCTGCCCAAGAGACGTTAGTGAAAATGaaTCACATGACCCGTTGGCAGATGTGTCACATGATCTAAGGCGCTGTGATGACATTGCTCCTGCGGCGCTGTCCCTGCCCTCCCTCTGTGGCCAGAGTCAGACCTCTGAAGGTCCTCTTAGCCCAGCTGACCTGCATGATGGGTCTGTCTCCAACACCacctctctgtcctctctctcttcattttcctctctttcctccctttcgtctctctcttctgtgccctgttccaaacctgtgacGCCCTGGTCTGTGCCGCAGACCTGTGACAGGTCGTCCCTCTCTAACATGGACTCCAGGGGCGGAGACTGCCTTAGCTGTCTGATCCCCAAAAATCAGACAGAACCGGAATCCTGTGAGTCCGTACTCGGCTTTGCCAGCATCAATTTGCAATGCCTTGGCCCCGCCCCCAGCGCAGGTCGCTATGGTGACCAGGTTCTATCAGACCAGCTGCTCAGTGGCCCTGCCCATCCAGCTGTTACCAATGAGGGGGCTGAAGAAGGGAGGTCGATGCAGGAGAGCGAATCAGATGAGGACCCTGCATCCAGGAGCATATACGAAGGTCTAGGAGAGGAGGCACAGGACTGGAGCTGTCTAGAGACTCTCATCAGTGAGAGTCGTATGGAGCTATTGGACTTATGCTCCCGCAGCGAACTTGCAGTAAATCTGTTCTGTGAGGAAGATGTGGAGAATTACATGTTTCAGGAGGAGGAGACTTCACTTGGCACTGATGTCTGCTCACTCAAGATACGCTATGAGTCCTATCAGGATGGAGTGCAGGAGAGGAGTGAGTCTGCCTTACAGGATGAATCTCAGCTAGGTTTCTTTCCTAGCTTACCTTGCAGTAGAAAAGAGGGGCCAAAAGAGAAACCAGACCAATCCGCTGAGATTAAGGCTGATGACCACGTGACCCCCACTATTAGCCCAGACAGTAACTTTCTTTTTGACCTCAGTAACTCTCCAGAAGATTCCGGTGAATTCAGTGATGACAGCTCTTGCACAGGCTCCCCAGACCATGGGCTCTCCCTTCGCCATGGCCGCTTGTCCAGAGAAAACTCTAGCTCCTCCAGCCAGCTAAGCTACCGCCTCAGAGCCAAGAGGAAGGTGGCCTACCGAGAAGACTACTTGTATGATGTGGACTCAATAGAAAGtgagaaaaatgcagaaaaacgaGAAAAAACCCCTGCTGGGTTTAAGAAAGAGCGTGATGACGACTGGTGCCCAAAGAAGAGGCGGCGGTCAAGTAGGAAGGACCCACctgtcattataaaatatataatcattaatcGTTTTAAAGGCCAGAGGCACATGAGAGTGCGTCTGGGGCGAGTCGACCCATCACCTGCTGTGGTCTGTCTGAGTCCAAATGCTCTGCTTCACTATGAGAGACTTGCACCATTAAAAGCATACTggcaggaaagagaaagagagcagcaGGAGAAGAATAGATTAACAGCAGCAGAAACAACCAAACGTCTCAATGGCTGCAAAAGACCAAGCACTGCTCCCAAACGCAAGCACAGGATGGCCAGACTCAGGATCCAGCAGATCCACACCGTACAGACTTCCCTCCCCAGCCAAACTATAGTGGTCCCCATCCACAATCAACCAGGGGGGACCGAATCCCTGAAAAGCACAGAGGAACCAAAAGAGGACATTACCTCCGTTACACACACTGCCAGGGCAAAAAGCAGAAcacaggagagagaggaaagaagaAAGGCAGGCAAAACAGGGAAGATAAAGAAGTTCAAAAGTGAAGCAAGACTTCGGTTGAAAAAGTTAAAAGAGGCTGAAACACAGGAAGTCCCAGAATCCTCTGAGATTGAGCAGTGCAGCCCATGTTTACCAGAAAACCTTAGTAACTCTTTGGAAGGTAATGCCACAAATGAAACCTCCAGTAATGACCCTGAAAAATGCACTTTGACCCCTGCTGCTCCGGGGACTGATGGAAATGCTGAACTCCTTCCCGGGGGTTACCTGCAAACACTTCTTGAAGCCTCTGAGTCATCAAGCACTGCTAACATTAACTATTTTCATTCAGGGCTACAGAATCCCACACTTCAGCCAGTCCAGAGCTGTgttctctctcctccctctgAATCAGAGCTGCCTCACTCTCCTCCACCTATGAACCACGGGCCCCACCACACGCATTATACTGAGCCAAACCTTACTGAACCAAACCAGCCCATTTCATGGCCATCCCAACAATCTGCTGAACAGCTGCCCTTCTCCCCAGACATCCCAACCCAGTCTCCAATGATGCCATCGGGCTTTCCCACACCGTTGCCTGTGTTAGCAGGGGATAGCACAAATGTCACAGGCTTTGGCCAAGTGTCTCTGTCAGGGTGCAGAGTCTCATATGAAGAATCCCAACCCGATGCTGATTATGGCTTGAGTCCGACTGGCTCTCGGAGTGACGGTGTGGGGCGGCTGGTTAGCTTTAACTCCCTGGGGTCACTTTCTGCCACCTCTAGCAACTACAGCTCACTCAGcctgagagagggagaaagggagagagaagaggaaattGGTGAGATCAACGATGGCTTCTTGCCACATTGCAGCCCACGGCTCATCTTGCAGCAAAGTCTAGAGGAGGTTGCTCCACTTCGAGAGTCGACTGACCTCTTGGATATCTCCAACTTCACCCCTGACAAGTTCCGGCATTCATCGCTCTCTGAAATGTCACCACCGGACACACCTAACTCTTCCCCTCAACTGCTGGGGAACTGTGGTAAATCTGGGGAATTTTCTGAAGCAACAGAAGCAAATGTGCAATGGAACTGTGGAGTTGTCCCTCAGCTTAATCAAGACGGAAACCCACACCACCTACAGATACACTCTTTCAACACAGAGGAGGATGAAGTAGGGCTAAGGGATCACAAAGGCTCAACGAAAAAGGGTGGGAAAAATGGACAAGCCACCAAAAAGAGCAAAACTGCTAAAACAGCGAAAGGAGAAAAAGTAAAGCTCCCACGTCAGGGTTCTCGTTCTGTGCGGAAGATCAAAGCCTTGCTAGAGGGAAAAGCAGCCAAAAGTGTCGGAGGGTCAGGAAGTGGTGCTTCTTCCCCTACTCCGTCGCTTGGCTTAATTGGAGCTCAGGGGGAGTGGCCTATTACTGGGGGACTGTCAAACGATGACCAACGAGAATTCCAAGAGCCATCAAACATCCTGTCCAATATAGTGTCTGGTATGGCTGAGGTACAGCGTTTCATGAGGGCCTCTGTGGAGCCTCTTTGGGGGCCTTGTCTTTCACCCGGTCAGCATGCACTCCAGAGCCAGACGCTGAAGATTCTGGGTAATGCTGCTGATCTTAAAAAGCGGGGTGGTGCCTCAAGTGGAGGTCGAGGGAAGAAAGGGGCTGGGCGTGGTGGTAAAGCACTGCCTAAACTTCTCCCACCTGGCTTCTTTCCTAACCTCGGATTGGACTGTCTCCCACTTCCACACCGTCCAgcccacaaaaaaatgtatcgtCACAAAAGCAGCGCTAAGTTTGCCCGCGAGGAACTCTTAGCGGGTAAAAGGGACATAAAAGGAGTAGCACTGACCGCTTTGGTCGAGAAACGGAGCTATAACACTGTATGTGTTAAATCGGTGTCACAGAACCATGGTTTAGACCGAGCCCAGCGCCCTGCTCTGTCTCTCAGCAAATGGTTGCCTTCTGTTCAGGGGTCAAAGATCATGTGTAGTATTCTGTGCTAAAAATCGTTTCCCCTCATTTCTGTGCCAACCCCTCAGAACACTGGGCTTTGACAAGCTAAAAGAAAGCATCTTGACCGAGATGCTCTTGTTTTCTGAGGTTCTGAAATTTCACAagagatttttttcattgttgttatttgtttataaGTTGTGAAAAAAGGAGGTTCATTCATCTGTTCTCCAGTGAATCTCCTCCTGCCAGTATCAAAATGCTGTTGTACACAGACATATGCACTATTTACAAAACAAGAttatatcaaacatgtttaaattaatGTGCCAAACTATGAACAATTAAATGTACAGACATTTTTATCTACAtaaatatttgctgttttataatgtgGCAGTGATTGaggagcgtgtgtgtgcttgGGATGGGGGGGGTTGTTAATCTGAGATTCACTCCTGTTGCATCACATCTGTACAAACAGCTAGCAGCGAGGAGTCATCTCaacaatcagaagaaaaatgctgttggtttattttctatgttttacACTCCTGGCTAGTTCAAGATTAGAGGCATGAAGTAAGAGATGCATGATGAGAATTGGTGGAAGGAAGCTGAAGTGCTATAATGGCAGAGAAAAACATTGGTTGCCTTTCATTCTGATGTGTTTCTGGATGGTCAAAGATCATTGTTCGTGTGTAACAAGGTAAGAAAAGGATCATTCCTTCTTTATAACAAGACTCAATGCATTTTAACTCGCTTATGTCCCCAAGTTTCTAGTTTTGgtaaatatatttctctgtACCTCAACCCTCCAAACTGGTTAAGAACAGGACcaaatttttttctaatttgttgCTAGTgatgtgcatgcatttaaaacatgataTGGATATGTGCTGTGAATGCTGATCCCCTGTATTACTTTCTGACTCGCCTGTTTTTTCTTACCTGATCTCAAAACCATTGTTTTTCTATTGCTGTTGGAATGTTATTTGTTGTGTTATAAAAAGAGGGAAAGATGCCAACCTGGTTACCCCCATGTGCTGTTTACTGCATTGCTTCAGGATCTTTTTTCTGCAACTCCCTGGATCCCCTCTTTTGTGAATACctatttgaaaagaaatattttctCTTTGATTTTCCGCCCTTGCGTTTACAAAGTGTGAATCCCCTTTGAGTTGTTCAACACTGCATTGAATCGACAGCTAGTAGTTTGAGAACTGTTCCTCCATTTTCAAAGTTTAGTGGGTACTTGTGCAAATGCTGTAACATTGCTGTGAATGAATTAAGGTGAAATTACCGGAGTGTTGAAATGTCAAAGGAAACAGGTGCAGATGATGAGTGACATTCCACAGCTTGTGGTGTAATTCAGAAGCGATTTGTAGGGCCTTCCCAGCCAAATCAACCTCACCAAGCAAAAGACCAggaaatattagaatataagtTGTTTGTCCAAACGATTTCTTTCTGTGCTGAGTGAATGGAGATGTAACACGGTTGGTTCAGGTCCGTTGACTCAGGGAACCCAACTGCATTGACATCTCTCATTCCCTCAGCTGCCCATCTCAACATTCAAACCCGAGCTGTTCTCAGCACCGCCCCCTGCTGTACTGTTTTTACATAGCACTACAGTTGCTAAACCTGCAGGACATCTGTGATGCCAATGCAGGGTGCTCTTCTTCATATACTTTGAGAGCCAAGTTTTACACCAGTGAAAACTCTATAGCACACATCCCCTGCACTGACCGAAGcgttcatatttttgaaaagttcTTAAACAGTGTTATTCCCCTATAAGTGCATCATGTAAAGTTAAAACAGGCATATCAAAAACTTAATTGTGCCCTATTTATGAATGTATTATATTGTCAagttggaagtatttttttcatgatttatttGACACTACATTACTTGTAACTACTTCTGCCTTTTTTCATCAtcaaggaaaaaaagaaacactttctACTGCCTGGTCTGTCTTCACCAGGTGGATTCTCAATGAACTCTTgatgtaggaaaaaaaaataatgacctgtatatttttcattgtgccaatttgtaacatattttctaagtgtatatttttcttaGAAAGTGATGTGAGGTCGTTCTTACTGTGGCTTTGTTCTTTTCCCTTTTCAGCAAGTGAAAAGGTTGCTAATTGCcatgatgttttctttctttctttttctttctctctctcttatttgttttttgtttgtttgttttaaagccaaaaattgaaaatactataaaaaataaataaaaaactattgtaaaggagagagaaggagagcaaGCTGTGACTCTTTGTTGAGAGTTTTTGTAATTGGACCAATCTTGTTGTAAGAGTGTTGTGCTctagttaaaatatatattaatttaaagataaaaaaagaaaccatgAAAACAGACAGTGGAACAATAACACTAATTTGTGATCTCATTGCTGTTTTATAGATTTTCATGTAAATTATTctagtattttgtttttgttgtatctgtcacaaaagttgaaatatttgtgatcaAGCCTGTATGGTGACAAATGTAATATTGGTAACTTGCTGAGTTTTGTAATCATGTTTAtggaataaatattaattaaaagagcTTTTGATCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52196 lncRNA downstream 58954 11304281 ~ 11330366 (-) False G35434
TU52195 lncRNA downstream 58954 11324745 ~ 11330366 (-) True G35434
TU52305 lncRNA downstream 76490 11311549 ~ 11312830 (-) True G35522
TU52216 lncRNA downstream 139314 11249199 ~ 11250006 (-) True G35450
TU52278 lncRNA downstream 168429 11219968 ~ 11220891 (-) True G35499
TU52399 lncRNA upstream 271350 11670957 ~ 11674817 (-) True G35592
TU52405 lncRNA upstream 292943 11692550 ~ 11694947 (-) True G35594
TU52415 lncRNA upstream 296584 11696191 ~ 11697674 (-) True G35597
TU52417 lncRNA upstream 298341 11697948 ~ 11699666 (-) True G35599
TU52418 lncRNA upstream 298341 11697948 ~ 11699511 (-) False G35599
XM_043239970.1 mRNA downstream 425 11382680 ~ 11388895 (-) True prps1a
XM_043239971.1 mRNA downstream 426 11382680 ~ 11388894 (-) False prps1a
XM_043239972.1 mRNA downstream 427 11382680 ~ 11388893 (-) False prps1a
XM_043239973.1 mRNA downstream 428 11382680 ~ 11388892 (-) False prps1a
XM_043238695.1 mRNA downstream 7537 11373802 ~ 11381783 (-) False tbx5b
XM_043239807.1 mRNA upstream 3396 11403003 ~ 11412347 (-) True zdhhc15a
XM_043239802.1 mRNA upstream 12809 11412416 ~ 11431060 (-) False LOC122345557
XM_043239801.1 mRNA upstream 12809 11412416 ~ 11431059 (-) True LOC122345557
XM_043239806.1 mRNA upstream 32253 11431860 ~ 11436272 (-) True cnga2b
XM_043239809.1 mRNA upstream 39502 11439109 ~ 11442421 (-) True chmp1b
TU52116 other downstream 463157 10923927 ~ 10926163 (-) True G35384
TU52098 other downstream 515256 10868364 ~ 10874064 (-) True G35371
TU51745 other downstream 927611 10461208 ~ 10461709 (-) True G35122
XR_006251099.1 other downstream 1053978 10325115 ~ 10335342 (-) False si:dkey-96l17.6
TU51236 other downstream 1986697 9337828 ~ 9402623 (-) True G34789
TU52323 other upstream 20348 11419955 ~ 11467122 (-) False hmgn7
TU52322 other upstream 64224 11463831 ~ 11467122 (-) True hmgn7
TU52344 other upstream 184173 11583780 ~ 11652627 (-) True G35554
TU52507 other upstream 401707 11801314 ~ 11815810 (-) False msna
TU52701 other upstream 765803 12165410 ~ 12169327 (-) False sh2d1aa

Expression Profile