RNA id: XM_043240398.1


Basic Information

Item Value
RNA id XM_043240398.1
length 9676
RNA type mRNA
GC content 0.50
exon number 48
gene id ncor1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15616601 ~ 15684436 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCTTCATCCTGTTTGCTTGAGAAAAACTCTTTCACTTCGTCTCCTCAGGTGCACCAGAGCTGCACAAAATGCAAGCCGCCGGGCATTCAGCAAGGAGAAACCGGTAGACTTGTGACGCATATTAATTTCTGACGCAGAATCATATAGAAAGCGACTGGACTTTATATCCACGACTCAGTGAGGACAAATAACTAGCCCGtgtttgaagtgtgtgtgtgagtgctcGCGCAGTCTCACTGCCGACGAATTACATTACCGCACGTTTGAACCGCACAGGCTCACCTTTCAGCGCTTATTGGGGTGTCCCTAAGGACATGAGGTGGTTTAGCAGCACAATCATGCCAAGGTTGAGCCCGTGATTGAGTAGCAGTGCTCCAGGCCCCGTCTGAGCCTCCAGCAccccatcagacagctgcagcatGTCTAGTTCAGGCTTTCCCCCCAGCCAGGGGTCCTTCAGCAGCGAGCAGAGCCGCTACCCGCCTCACTCAGTCCAGTACACTTTCAGCTCCACACGCCACCCGTCTGAATTCCCGGTACCTGACTACCGTACCCCTCTGCAGGACCAGCAGCGCCGCAGGCCTTCGCTACTATCCGAATTCCACCCTGGGACTGAGAGGCCACCGGAGCGCAGACATGGTTATGAGCAACAGTTTCATGCTGTCCCAGCTCAGCAGGAGCAGGAGACTCTCGAGGCCAAGCGCCCCCGCATCGAGAATGTATCGGAAACGCACTTTCCACGAGCTCAACCCACTGGCATTGTACTGCCCCCTCCACAGACCATACAGGACAGCATTAAAATCACTGGAGACATcaagaagGAAACCCAGTTTAGTGTGAAGGTGGAGGCCTCATCCCCAGGTGGAGTTCCACAGGTGGGTGAGGATGCAGACACATCGCCCTCCAAACTCTCCAAGGAGGAGCTGATTCAGAGCATGGACCGAGTTGACCGTGAGATTGCCAAGGTCGAGCAGCAGATTttcaaactgaaaaagaaacagCAACAACTGGAAGAGGAGGCAGCAAAGCCAGTAGAGCCAGAAAGGCCTGTGACACCTCCCCCTGTGGAACACAAACATCGCAGCATCGTCCAGATCATTTATGATGAAAACCGGAAAAAGGCAGAAGAAGCCCATAAGATACTGGAGGGGTTGGGGCCTAAAGTGGAGCTGCCTCTGTACAACCAGCCATCTGATACTAAAGTCTACCATGACAACATTAAGACGAATCAGATGATGAGGAAGAAACTGATCCTTTTTTTCAAGAGGAGGAACCATGCACGCAAACAGAGGGAACAGAAAATTTGCCAGCGGTATGATGAGTTAATGACAGAGTGGGAGAAAAAAGTTGAGCGAATGGAAAACAACCCACGCCGTAAAGCTAAGGAGAGCCGCACACGTGAATACTACGAGAGGCAGTTTCCTGAGATCCGCAAACAGCGTGAGCAACAGGAACGCTTCCAGAGGGTGGGCCAGAGGGGGACAGGCCTGTCTGCCACCATTGCCAGAAGTGAGCATGAGATATCCGAGATCATCGATGGCCTCTCTGAGCAGGAGAACAATGAGAAACAGATGAGGCAGTTGTCCGTCATTCCTCCAATGATGTACGATTCCGAACAGCGGAGAGTGAAGTTTATCAACATGAACGGTCTGATGGATGACCCAATGAAGATCTACAAATCCCGCCAGTTTATGAATGTCTGGACCGAACACGAGAAGGAGATCTTCAGGGAAAAGTTTGTGCAGCATCCAAAAAACTTTGGGCTCATCGCTTCATTTTTGGAGAGAAAGTGTGTGTCTGATTGTGTGCTCTACTATTATTTGACTAAGAAGAGTCAGAACTATAAAACTCTTGTCAGACGAAATTTTGGTAATCGCCGACGAAGAAATCagcaGATAACGCGGCCATCACAGGAAGACAAGACAGACGAGAAGAACGAAGAGGACAAATCGGAGAAATCAGAGAAGAAAGAGGACGAGGAGAagaaggaagaggaggagaaagatgaaaaagagGACTCTAAGGACATCGGTAAAGATAAAGAGAAGTGTgagggagaggaggaagagggtAAGGAGCAAAGCACGACACGTGGCCGAAAGACCGCCAACAGCCAGGGACGCCGTAAGGGCCGCATCACCACCCGCTCCATGGCCAATAATGAAGCTGCTTCTGTGGTGGCAGAGGAACCACCTGCACCACCACCTGAACCAGCTCTGCCAGAGCCCACACCCCCCTCTAAACCTGAGCCAGTGCAGAAACCAGCACGAGAGCCTGCAAAACCCTCTCCCGCAGCCAGTGCAGAGGCACGAGGCGCAGTTGAAGCTGGAGAGACGTCTCGCTGGACGGAGGAGGAGATGGAGATCGCCAAAAAAGGGCTGGTTGAACATGGTAGGAACTGGTCATCCATTGCTAAGATGGTAGGCACTAAGAGTGAGGCTCAGTGTAAGAACTTTTACTTCAACAACAAGAGACGATACAACCTAGACAATCTACTACGGCAACACAAGGTACAGGGTTCCCGGCGACTCCGTGGAATTCGAGACCCATCACAGAGCGATCCTGCacctgatgatgatgaggagagCGACGGTCCCGATAATAGTTCGGACACAGAGAGTGCACCATCTCCATCTCAAACTGATCCCTCCAAATCAGACGCGCCAACTCATCCCAACTCTGCTCTGGATGGAATGTCAGACCAGGAAGTCACGGCAGCAAAAGGCTCAGTGGCAGATGCCAAGTGCCAGGAGTCTCTGTACGGCGAGCTACAGGTGAAAGTAGAGAAGAGTCCAGAAGGAGGAACTGGAGACGGGCTTCCTCAGGATGAGCGCACACGCTCTGCATATGAAATGCAGATCCATCCAAAAAGTGAGCCGCAAGATGTGGAGATGACTGCTCCAAGCAGTGAAAGAGCGCAGGTGCAAGTGAAGATGGAGCCGGAGGTTAAAGACAAGGAGGAGAAACAGGCGGAGCAACACCACTCCGATAATGACTCTAGCGCCACCTGTAGTGCAGATGAGGATGTGGAGGCTGAACCTGACCGACAAAGACTTTTCTCTTTGGACAAGCCATCATTGCTTGGCACTGCAGGCTCAGTGGTTGTGTCCTCAGCCAAATTCCTCAACATGCAGCAGCTACAGCAGCGGGCCGCCACCATCCCCCCTATGGTTTCAGCTCCATATGGTCACAGCAGCGTTCCCGGAGGGCCGTTGAGTGGCTTTGCTATGTTCCAGCACCAAATCAAAGCTGTACATGAGTCTGTGCAAGACGACAAACAGAGACTGGATCAGATCGAGTCTGACCGCAGGCCACGAGTCACCACCCACAGCCCCACTGTAGTGGACCGAGAAGGTAAGCCATTTACTTACATGCCATATGACTTGAAGCTGATGGAGCAGGAATCTCACGGTGGAGCGGGCAGACCGGGGTCTCCATACAGACTCTCTCCTCGCGAGCCTAGCAAAGCCTCACCCCAGCCTGACCCCAGTAATGCCACCCGCTACAGTGTACCTCCAGTTCTTCAGCCGGCACCAAACCAGGCAGTTCAGAATCTTTCAGATGTTCGCATGACGTTTTCCCGTCATAGGCCGCCCAACATTCCTTCTCCTCCACCCCTCATTCCCACCTCCAAACCCACCGACAAGCCTTCCTTCATTCAGGGAGGCTCCATTTCACAGGGAACGCCAGGAACATACCTTCCTTCTCAAACACACGCTGTGTACGTACCAGAGGTAGTCAAGGCCACAGGGGGGTCGATCTCTCTCGGTTTACCAAGACAGCAGGACCCTGCTAAACCTGtgTCATATATTAAGCAGGAAGAGTGTTCTCCACGTGGACAGAGTGCTCAGGCTGAGGGTCTCTTATCTAGAACTCAGTATGAGGGAGTCGTCAGAGGACCCATACAGATTGCAGACATGAGAGGGCCACCTGGAAAAGGCACAGAAGCCTTGACTTTCAGAGGAGGCTCCATTACACAGGGCACTCCAGCCCTGAATCAGTCCAATGTAGCAGCGGATCTGTTGAAAGGCACTATTGCTAAACTGGCCACAGAGGACCTGAGCAGCCCAGAGAAGAGCCGAGCTGATGCTCATTCTAAACCTCACGTTATCTACGAAGGCAAAAGTGGACACATCCTCTCTTTTGATGGTCAGAACCAGAACTGCTTCCTTTCTGCCGTTAAGAACCCTAGAGAGGGCACTAGAAGCCCACGAATGGGGCATGATCTCAAGCGCACATATGACATCATGGAGGGGTCCCGTGGACACCCAACACGTGAAGCAGCGCCTTATGAAGGTTTGATCAGCAGAGCATTGCCAAGAGAAAATCCTCACGAGTCTAAGGATCGAGCCATACTCGCAGGATCTATCATGCAAGGAACACCAAGAGCCTCTGCTGAAGTGTATGATGAGGCCTCCAAGTACATTAAACAGATAAAGAGGGAAAGTCCACCCATACGCTCTTTTGAGGGAGGCATCACAAAGGGTAAACCGTATGAGGGAGTTAACACCATAAAGGAGATGGGCCGCTCAATTCATGAGATTCCTCGTAAGGAGACTCAAGATAGTCGTAAAACTCCTGTTCTGGAAGGATCCATTAATCAGTGTGCATCTCTGCAGGGTATTCCTCTGAAGTACGAGAGCAGTACTGTGAACCCGTCAGCTATCAAGCACAATGTTAAATCTCTGATCACAAGCCCAGTGAAGATCTCCCACTCTGCCATTGAAGCAGCTGAGCGCGAGAGGGCCGAGTACGAGGATGCGAAGGCATCCGAACGTGTCCGGCACACCTCTGTAGTGAACTCCACATCTGTCCTGCgctccacacacacagaagcgGGAAAATCTCAGCTGAGTCCAGGCATGTATGAGGACAGCAATGCACGCAGAACCCCAACATACACCAGCACCTCCATATCTAGAGGATCACCTCTTCTGCGAGGGCAAGATGGAAGTATAACAACAGGTAAACCAGCTTCTCATGAGAGGAAGAGCACACTGACTCCAACCCAGAGGGACAGTGTTCCAGCCAAGTCACCTGTGTCTGGGGGTGAACCTCTTGCTTCGCACAGCCCGTTTGACCCCCACCATAGACCTGTGGTTCCTGGAGAGGTGTACCGGACTCATCTACCACCACACCTGGACCCCAGCCTGGCTTTTCACCACAGGGTCCTCGACCCAGCGTACATGTTCCCACGGCAACCGTCACCAACCGGTTATCCCAACACATACCAGCTGTACACCATGGAAAACACTCGGCAGACCATTCTGAACGATTACATCACCTCGCAGCACATGCATGGCACGAGGGGGCTGTCACCACGGGAACCGTCCATTGCCATCCCATACCCACCAGCTAGAGGAATAATTGATCTAGCCCAGATGCCACCTACCATCCTGTTACCTCACCCTGGGGGGACAGGTTCCCCCTCCCTGGACCGCATCACCTACATCCCTGGACCTCAGACCCCTTTCCCTCCTAGGGCATTCAACCCTGCCTCCATATCTCCAGGACATCCTGCCCATCACAGTGCCACTGCAGCTATTGtggaaagggagagagagagtcagagagaaaAGGatcgcgagagagagagggaaagggaGCGGGAGCGTGAAAGAGATCAGAGAGAACGGGAACGCGCCGCAGTAGAATATATGCGTGGAGGTTCTGAGCAACCAGGCCGACCAGGCAGCCGTAGTTTTCTGCGTTCCACTTCACCCTCTATGAGATCACAGGAGGGTGTCCTCCAACAACGTCCGAGCATCTTCCAGGGCACCAACTCCAAGAGCGTCATTACACCACTCATGCAAATGCCCTCACAAGCAGCTGCAGCTCAAGCCAGCCGATACAACAATGCAGCTGACGCCCTCGCTGCTCTGGTAGATGCTGCTGTCTCTGCCCCGCAGATGGATGTTGGGAAAGTCAAGGAGGGCAAGCATAATAACAGTAGCTCCCGGGATGATGACATGATGACATCACGACGGGCAGCGCAGGAGGCACAAGAGATGGAGCGCCGTTCCATGCAGTCACCATATGGGGACGTGTCACTTCCTAGTGGGAAACCTTCCCATCCTGTGTATGCAGAGGGTGGAGGAGCTGCGGGGAGCAAAGAGAAAGCCAGTCAAGCCAAGTCACGCATGGAGGAGGAGCTACGTACACATGGGAAGACCACCATAACGGCTGCAAACTTTATTGATGTCATCATCACGCGCCAGATTGCCCCAGATAAGGACTCCCGTGAGAGAGGCTCACAGAGCTCAGACTCCTCCAGCAGCATGTCATCCAGTCGTTATGATGCTCAGGGTGGAATTGAGGTGATCAGCCCAGCTAACTCTCCAGCCCTAAGAGAAGAGAAGAACGAAGGATCTTTCCCATCAGAAAAGAGCTCAGGATTAAGGTTTGACATTAACCGGTTAAGACAGTCAGGAGATTCAGGACCTTCTGCACCTCAACAGCCCCCCTCCTCACAAGCAGACAGTTATGGGCCCGTCCCGAAAACTCACCGCATCATGACCCTCGCTGACCATATTTCGCATATCATTACACAAGACTTTGCCAAGAGCCAAGATCCTTCTTCATCATCCAGCTCACTGccttcctcttcatcttcctcctcgCTCTCCTCCGCTTTCCAAAGCTCTGGTGTGGGAAGTGTTGTAGGTCGAGTTAAACCCCCTAACCGCTATAGCCCAGAAAACCCAGCTCCTACTGCACATCACCAGAGACCACCAAGCAGAGTATCTCCTGAGAACCCCTCAGATAAATCAAGATCCAGGCCAGGTAGATCTCCTGATCGAGGACGAGGACCAGAGAACTATGAGCCCATCTCTCCTCCTCAGGGTTATTCTGGGCTGGATAAACAGGAAGCCACTGTAGTGCAGAGTCAGAGACGAGAGCAGGATCTCCCTGAACAGAGGACTGACTCACGATCACCAGGCAGCAGCAGTTACCTCCCCTCATTCTTCACCAAACTGGAAAGCACATCTCCTATGGTTATGTCCAAAAAGCAGGAGATCTTCCGGAAGGCAGATGTCGGTAATGCTCAGCCAGGCACAGAGATCTTCAATCTCCCAGCAGTAACAACGTCGAGCAGTGTAAACCCTAGAAACCACTCGTTTAGTGATCCAGCCAGTAATCTGGGTCTGGAGGACATCATCAGGAAGGCTCTGATGGGAAACATGGAGGAGAAGCAAGACGAGCCTCAGCAGCAGCAAGCACAGCTGGGAACAGGAAACAGCTCAGGAAGCATGAGCAGTATTTCAGACGGCCGACAGGAAGCCAGCCCATCTCCTAACACAGCAGGAAAGCAGAAGCTTCAGAGCAAAGCTAGCAGCAGGAAGTCGAAGTCTCCTAACCCAGGCCAAGCGTACTCTGTCGTAGAGCGGCCCTCTTCTGTGTCCTCCGTTCATTCGGAGGGCGATTACCACAGACAGGCTCCCACCTGGGCTTGGGAGGACCGGCCATCGTCCACAGGTTCCATGCAGTTCCCCTATAACCCCTTGACGATGCGCATGCTCAGTAGTACTCCTCCCACCTCCATGGCCTGCCCATCTCCCTCCATGCAGTCCCAGCAGCAGCAGGGTGGCACCACGGGCCCCGTGGCCTCAACACGTGCATGGGAGAGAGAGCCACCGCTGCTGTCAGAGCAGTACGAGACCCTCTCGGACAGTGACGACTGAGGCAGGTGATCACCTCCCTCTTCTACGCAAGCATCCACGCCCCTCTCCTGTTCACCATCGCCCTTCTTTCGCTGTCTTTTATGAATCCCGCTCACTGCCATTTGAGAGTGAGATTCTGCCGGGAAGGAGGATGTACGTTTGGTGCTACTTTGGTGCCCATTGGTGGTCAGAGAGAGCATTGCAGAGAGCCACTGATTTTCAGGATTAAATccaatgctttttgtttttgtttttttattctctcttttttttttggcccatTTGGGGACGAGAACTAGACAAATCCCAAGTGAATAGAGACGCGAACATCAAAAGGATGAAGAACTTGTAAAGAGACTTGTTTGCTGAAAATTTGTTTCTGTAAagattttttgtctttaaaaaaagaaaaatcaatgtcTGTAAATAGAGTAAccttttgcagtgtttttcctTTAACTCgtttttcgttttttgtttttctgcattttaacaTTGCTTTTTAAATCTATCCCAGTTGGATGGATCGGTGGGTGCAGATTTTTGTGGTCAGTCGGGTGAAGAGCATCGAGCTTCCAGCATCTGAAAGTAATGGTCTGAACGAAACTACTCCAAATGAAACGCAAAAAGGACTTCATTAGCTTTTTCCCTCCAGATGCGGACCCTGCCTGTGCAGCACTGTTGAGATGTTCTGTGCCCTGATACTTCAGGGAGGAAGTCACGATCTTTACAGGAGGACGAGACATCAGCCTTTTCTGGTGTAGCTTATCTGATTCACTTCAGACAAGAGATGTatgtttcttctgtttttctctctttttcttttcagatcGGTTCTAGTCTTCAGTAGTGGCCTGCTGCAGATCTGTTCAGAGCGTTTATCCCTGCGGTTGAATGTCTGACAGTTTGACatgttgccatttttattttgtggttgttaacttttcttcttcttcttcttcttctttttttttttttttttaatatagaggTTGTACATGGTCCGCCACCCCTCCCCAGAAACCTTTTTGCTTTTagaagatgaatttgtttctggAGGAACATACTTGTAAATCCTCTTTTACTAATCCTAATGGAGCACGTATAACGTGTATATTCTGTCAACGTGTGATTTTCTTagaccacaaaacaaaaatacaaagataAAAAGAGGAAGTACCAAACTTGATACATCTCTGCACCATTGTTGCACTTTTATTCTTTAGTCGTTTTGAGAAGCTTCAAATCATACTACCTGTAATCTAAGTTATTCAGTGTCGTGCAGATGTCTGAAACACTTTCAGAGTTTATTCATGTTTCAGTCTATTACCCCATCTGCATTTGCAATTCTTGGAAATTTGACATTTCGTTTTAACTTGGATTAAGCGTATAAAATCGGTACCATTTATCTTAGCTGCTGCCGAGTAGCAGCACTCGATCAGAGATCTGAATGTCTCTGAAAGTGAATAAGCTCAGTTTTAGTTACTTGCAGAAATAGTTCAATGTGATGAAAGCTAATGGAGGCATCTCTTGAAtcctgctttttttcccccacttcATGTGCTTCTGCTTTGTTCGAATAACACCACCTTTAATATGACGCGTTTGTTTTCTTCAGAAGTCGAAAAAATGTTGAGCTTAtgtttggaattttttttccacattctttttattttatgatatttttcagCATCAATGTTATATTCATCCTGTTTTAACGGGATGTCAAGTGTTTACAATGGCATTGACATAAAATGGTGAAACTtgaatcttaaaattaaaattgctcATCACGTCAGTCTATTTTACAGTCCAGCTTTGCAAGGgtgactttgtttttttgtttttttcttttctggtcTGTTCTGAATCAAGACTTGAAAAAAGTAACTTGTCCCCTGATTTTAAAATCCAGTGTTTGTATCACTGTCTCCTCGGTAGTGGATGAGAAATGTGCAGACCAATCAATAAAGTAGAACAGAGCTCCACCTCTCTGAAACAAACAGCGCTGTA

Function

GO:

id name namespace
GO:0009952 anterior/posterior pattern specification biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54475 lncRNA downstream 51339 15564098 ~ 15565262 (-) True G36969
TU54473 lncRNA downstream 54238 15562148 ~ 15562363 (-) True G36968
TU54472 lncRNA downstream 54523 15561722 ~ 15562078 (-) True G36967
TU54241 lncRNA downstream 447243 15169047 ~ 15169358 (-) True G36811
TU54112 lncRNA downstream 710980 14905385 ~ 14905621 (-) True G36714
TU54502 lncRNA upstream 19316 15703752 ~ 15709388 (-) False cenpv
TU54544 lncRNA upstream 29239 15713675 ~ 15713975 (-) True G36986
TU54670 lncRNA upstream 44767 15729203 ~ 15729893 (-) True G37067
TU54680 lncRNA upstream 58304 15742740 ~ 15808380 (-) False fam222ba
TU54682 lncRNA upstream 59278 15743714 ~ 15755392 (-) False fam222ba
XM_043240407.1 mRNA downstream 139 15614467 ~ 15616462 (-) False LOC122345891
XM_043240406.1 mRNA downstream 139 15614467 ~ 15616462 (-) True LOC122345891
XM_043238711.1 mRNA downstream 5507 15605437 ~ 15611094 (-) False LOC122345011
XM_043238710.1 mRNA downstream 5507 15605437 ~ 15611094 (-) True LOC122345011
XM_043240049.1 mRNA downstream 12269 15589884 ~ 15604332 (-) True si:dkey-65b12.6
XM_043240512.1 mRNA upstream 19097 15703533 ~ 15709430 (-) False cenpv
XM_043240511.1 mRNA upstream 19097 15703533 ~ 15709430 (-) False cenpv
XM_043240513.1 mRNA upstream 19912 15704348 ~ 15709429 (-) False cenpv
XM_043238308.1 mRNA upstream 42408 15726844 ~ 15728006 (-) False emc6
XM_043238745.1 mRNA upstream 72772 15757208 ~ 15808319 (-) False fam222ba
TU54482 other downstream 41784 15573111 ~ 15574817 (-) False alkbh2
TU54484 other downstream 41784 15573258 ~ 15574817 (-) False alkbh2
XR_006251075.1 other downstream 249188 15350016 ~ 15367413 (-) False npr3
XR_006250970.1 other downstream 308161 15296018 ~ 15308440 (-) False zfr
XR_006251010.1 other downstream 351656 15205951 ~ 15264945 (-) False pdzd2
TU54499 other upstream 19316 15703752 ~ 15709388 (-) True cenpv
TU54667 other upstream 40591 15725027 ~ 15727910 (-) True emc6
TU54666 other upstream 42346 15726782 ~ 15727910 (-) False emc6
TU54665 other upstream 42419 15726855 ~ 15727910 (-) False emc6
TU54668 other upstream 42419 15726855 ~ 15728108 (-) False emc6