RNA id: XM_043240406.1


Basic Information

Item Value
RNA id XM_043240406.1
length 1821
RNA type mRNA
GC content 0.37
exon number 3
gene id LOC122345891
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15614467 ~ 15616462 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGTCATCTACTTAACActtctaaaaaatgtttgtaagaATCTTTAGTCTGCCTCAACCCAGATTAAGATATTAATTGACGCACAAACAAAAGCTGTTACAAACGGATCAACTTCATTTACATGAAGGGTCATAAACTAACTGAATAAAAGATTTCATTTTAGGATGTTTGGGGTTCTTTCTAAATCTTACATGTACTTTGTAATAAACATCTTCATCCAGATCCTCAAAACCTTCATCACTTTTTCTTGCCTTTTTGGCCGCTAAATTCTGTTTGACACAGAAGAGTAGTGGTTTTCTATTCTATTGTCTTCCCtataggaatagttcaccttCAATTCTACCAACTtgcatagttttatttttttcagtacaatacaagtcaatggggaccaacaactgaaggtgaactatccctttatttgtgtaaatgcaGGCTATTTAGAAATTAGCTGATGGGCTGTTTAGTgaccagatttttttatttaattttttttgctgttttattctgCTGTTTATAGCGTTACATGCTTATTAGAATCCCACTGATGAAACAAAAACTGTCAGAAGCATAATTTTCACATTCACCAAAAAAAACTCCCCGAAGATGTTCAGTGTTCATCTCCCTTTATTCAAGAAATTACAATGTTTTGGTCAAAGACCTTCATCAGGCAAACACACTGATGAATTTGTGTTCAGTTTGTAAGGAATTCTTTTGACTTTTAACTTCTGCAGCTTCAGTGATCAGATCAGACCATGAAGCTGTTTGAACTGTGTTTCCCTGCTGTCTGGATATTGTCCTGCTGTGTATTCTCTGGCAGAGGTCATGGTGTGTGTACTGTAGGGAATCTCATTAAAAGAATCAATTTAACCACAGAACTGAGTTCTGAAATCCTGCTGCCGTGTCTTTATGAACCAGCTCTCAAAGGATCACACCTGACCGAGGAATCATTTGCTGACTGGATTCAGATTAAAACCAACACTGACTACATTGTAGAGATCAGTGTAAATGGTCAAGAAAGCTTCTGGAATAACAGACAGCATAGAATTAAGGTATTCAGAGAAGTCGCTGGCTCTGGAAACTTCTCTCTCCTGATTAGAGATGTGCAGCTGTCTGATCTGGGTCTCTACCGCTGTGAGATCTTCAGAGGCATCAACTGTTCTCTGGGCTATGTAGAGATAGAAATCAGTCTGGCCACTGTTGAGATTTCACTGCTCAGTAACTGGCGTCTCATAGCTGCAGGTGGAGGAGGATTTCTGCTTCTCTGTCTGATCACTGTGTGCTTTTACTGTATGCTGGCAAAACGTGAGTCTGGTAAACCTGCTATGAGACCTGGTAAGTTAATTgcacaattattatataataatgtaacagaATTTATACAACACGCATACTACCACAGTATGATTTTGAATTTGATAAGGCTGATTTAATTCGTAAGTCTCTTAATTCGCTCTGTAATAGTTTTCAATGCAAAACCGCTCTCAAATGCAGATGTGTTTAAATCTGAAGAACATATTGTACAAAGCTTCATATCATTAACACTTTCTTTTAACATCATCTTTCAGGTCCCGCCTTTGATGCTTTGACCTACACAACAGTGGTCTATTAGGGATTGCCTAGAAATGCGTGCATTTAcatcataattaaaatacattattacagTAGTCTGTTATTTATATACTGCGTGTAAAATCTGTTGATTGTATAACATATAAACTTTGAGATGTATCTTTGTAACATGGCTGTGTTGGCAGACAGGCTACGTTTCACGACACGCTTTTAATTCACACCCCTATTTACctgaataactgaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54475 lncRNA downstream 49205 15564098 ~ 15565262 (-) True G36969
TU54473 lncRNA downstream 52104 15562148 ~ 15562363 (-) True G36968
TU54472 lncRNA downstream 52389 15561722 ~ 15562078 (-) True G36967
TU54241 lncRNA downstream 445109 15169047 ~ 15169358 (-) True G36811
TU54112 lncRNA downstream 708846 14905385 ~ 14905621 (-) True G36714
TU54502 lncRNA upstream 87290 15703752 ~ 15709388 (-) False cenpv
TU54544 lncRNA upstream 97213 15713675 ~ 15713975 (-) True G36986
TU54670 lncRNA upstream 112741 15729203 ~ 15729893 (-) True G37067
TU54680 lncRNA upstream 126278 15742740 ~ 15808380 (-) False fam222ba
TU54682 lncRNA upstream 127252 15743714 ~ 15755392 (-) False fam222ba
XM_043238711.1 mRNA downstream 3373 15605437 ~ 15611094 (-) False LOC122345011
XM_043238710.1 mRNA downstream 3373 15605437 ~ 15611094 (-) True LOC122345011
XM_043240049.1 mRNA downstream 10135 15589884 ~ 15604332 (-) True si:dkey-65b12.6
XM_043239936.1 mRNA downstream 35500 15568019 ~ 15578967 (-) False alkbh2
XM_043240392.1 mRNA upstream 139 15616601 ~ 15684436 (-) False ncor1
XM_043240405.1 mRNA upstream 139 15616601 ~ 15684436 (-) False ncor1
XM_043240399.1 mRNA upstream 139 15616601 ~ 15684436 (-) False ncor1
XM_043240400.1 mRNA upstream 139 15616601 ~ 15684436 (-) False ncor1
XM_043240394.1 mRNA upstream 139 15616601 ~ 15684436 (-) False ncor1
TU54482 other downstream 39650 15573111 ~ 15574817 (-) False alkbh2
TU54484 other downstream 39650 15573258 ~ 15574817 (-) False alkbh2
XR_006251075.1 other downstream 247054 15350016 ~ 15367413 (-) False npr3
XR_006250970.1 other downstream 306027 15296018 ~ 15308440 (-) False zfr
XR_006251010.1 other downstream 349522 15205951 ~ 15264945 (-) False pdzd2
TU54499 other upstream 87290 15703752 ~ 15709388 (-) True cenpv
TU54667 other upstream 108565 15725027 ~ 15727910 (-) True emc6
TU54666 other upstream 110320 15726782 ~ 15727910 (-) False emc6
TU54665 other upstream 110393 15726855 ~ 15727910 (-) False emc6
TU54668 other upstream 110393 15726855 ~ 15728108 (-) False emc6

Expression Profile