RNA id: XM_043240420.1


Basic Information

Item Value
RNA id XM_043240420.1
length 2908
RNA type mRNA
GC content 0.44
exon number 18
gene id nf2a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1224554 ~ 1256414 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaacaatgacacgAAACCACAGGTTAGCCTAAACAAGCGTACGTGAACATCTAAAATGTTGTGAAGTCGTGTAAAAGTTGCTACAGGAGTGCATACTTGAGTGTTACGCTTAATGAAGCTTTAGAGGAAGTGAATAGGGGATCCAACTTCTAGTTACCAGTTAACGCTGGTGGCTTGACATCGTCCTGCTTTTAGAGATGCACTTTAATCACATTTTGTTACGTTGGCCAGTAATGCTAAATTGTAGCTTTTAACCAGAGATCAAATCTGCTGCGTTTCATCACAAGCTATGCTTCAGGTAGAGAGTTAGTATACCGGTTTATGCTGTTTCTAAAGAGGAGAAAGCCTTCCCATCCGTTATGGCAAGTGTCCTTGCATCAAAAATGGGTCTCAGCTCCCTTCGAAGGAAACATGCCAAAACCTTCAACGTCACAGTCGTTACAATGGATGCAGACTTGGAGTTCAGCTGTGAGCTGAAGTGGAAAGGAAAGGATCTGTTTGAACTTGTGTGCCGGACACTGGGACTCAGGGAGACCTGGTTTTTTGGTCTGCAGTATGACGTCAAAGACACTGTGGCGTGGCTGAAAATGGACAAGAAGGTTTTGGATCATGATATGCCCAAAGAAGAGCCCATAGTGTTTCATTTCCTGGCCAAGTTTTACCCAGAGAATGTTGAAGAAGAGCTGGTGCAAGACATAACACAGCAACTCTTCTTCCTGCAGGTAAAGAGGAGTATATTAGAGGAGGAGATATACTGTCCACCCGAGGCTTCGGTGCTGTTAGCCTCTTATGCCGTCCACGCTAAGTATGGTGATTATGACCCTAATGTCCACAAGCCGGGCTTCCTATCCCAAGAGGAGCTGCTACCaaagagaGTTATTAATCTGTACCAGATGACTGCAGAGATGTGGGAGGAGAGAATCACGGTCTGCTACGCTGAGCACAGGGGCAGAACCAGAGATGAAGCTGAGATGgagtatttaaaaatagctcAGGATCTGGAGATGTATGGGGTCAATTACTTTTCCATTAGGaatAAAAAGGGAACCAGCTTACTGCTAGGTGTGGATGCTTTGGGCCTTCACATTTATGACCCGAGTAACAAACTGACGCCCAAAATCTCTTTTCCCTGGAATGAGATCAGAAACATCTCGTACAGTGATAAAGAGTTTGCCATTAAACCCTTGGATAAGAGGGCAGATGTCTTCAAATTCAACTCCTCAAAACTCAGAGTCAATAAACTGATTCTTCAGCTGTGCATCGGGAACCATGATCTCTTCATAAGGAGACGCAGAGTTGATTCGCTGGAAGTCCAGCAGATGAAGATGCAGGCTAGAGAAGAAAAAGCTCGCAAACAGATGGAGCGTCAGAGGTTGGAGAGGGAGAAACAGTTGCGTGAGGAGGCAGAAAGAGCTCGTGATGAACTGCAGAGGAGACTGATTCAGTTACAGGACGAAGCTCACATGGCCAATGAAGCACTGTTACGCTCGGAGGAGACTGCAGATCTGTTGGCGGAAAAGGCACAAATCGCTGAGGAGGAGGCCAAGCTGTTGGCTCAGAAAGCGGCCGAGGCTGAACAGGAGATACAGCGTATTAAGGTGACAGCCATTCGCTCCGAGGAGGAGAAGAGACTCATGGAACAGAAGATGCTAGAGGCTGAGATGCTTGCACTCAAGATGGCAGAAGAGTCTGAAAGGAGGGCGAAAGAAGCCGACCAGCTGAAACAGGACCTACAGGAGGCAAGAGAATCGGAGCGCAAAGCCAAAAACAAACTACTTGAAATCACCAGTAAATCAGCCTACTCGCCTGTGCCGATGTCTGCCAACGCTCTTCCTCCTGATGGCCCGAACTTCAACTTCAGCATGGAGAACCTGAGTTTTGACTTCAAAGACACAGACATGAAACGTCTGTCCATGGAGATCGAGAAGGAGAAGGTTGAGTATATGGAGAAGAGCAAACACCTTCAGGAGCAGCTAAATGAACTGAAGACTGAGATTGAGTCATTAAAACTAAAGGAGCGAGAAACACCTCTAGACATTCTACATAATGAGAACACCGAGAAAGGCACCAGCAAGCAGAGCAACTTTAAGAAGCTCACTCTACAAAGCACCAAATCCAGAGTGGCCTTCTTCCAGGAGCTCTAGCCATCCAGACGCTTTGGACTAGTGTTTGAATGTGTTGACAATGTCTTGGGTTTTTATCACGTTCCTGACAGGCTGTGACTCATTCCTCTATGAACCTAGCACGCTCTGGTGATGAAGAATGTATACGTGGCTAAAGTTTACATTACACTAAGAGGACCAAACTCTCACTAGACAGAACTACAGAGTGGAGTGGAGCTTTTCAGAccgccacacacacaccaacataaACTCATTCACATACAGAGACACACTACACGTTGTTTCCCAATATCCTTTTATCTGCAGGAGGTCAGAATCCCATTATGAAGACACTACGGTTAAGCAGCGTACACACACTGACAACATATAACATTGCACTGCATCCTAAATCCATCTCTCCGGTTACACAGCAGATATCTCGGTCTCTCGATCAATACGTGTCAGAATAATTGGCTAAAGCAGTGGTATTGCACCCTTGTGCCGTATTAGTTCgtgagtttgttttgtttggggtCCAATATGGAGCTGTCTGGTCGTTCATAAAGATTGTATTAAACCTAATTGTTACAGTATAAAAGAGTTTACTTCCTCTCAGAGGATAGCTTAGCACAGTATATTTTAGGGAAAGAAAACCTTTTGGGATCACACCGTTTGGAAGACACATGTGAAATATTTGGATTTCGTTTAACTGTTTACTccattttacaatgttttaaagaatttgaatatatttttaaaaatgtttttgtgcagagGAATAAATGAACGGAAATGATCTTAAA

Function

GO:

id name namespace
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47599 lncRNA downstream 172375 1051867 ~ 1052179 (-) True G32292
TU47582 lncRNA downstream 345412 877910 ~ 879142 (-) True G32275
TU47578 lncRNA downstream 401725 820615 ~ 822829 (-) False LOC122344906
XR_006250945.1 lncRNA downstream 402090 820190 ~ 822464 (-) True LOC122344906
TU47550 lncRNA downstream 506144 718137 ~ 718410 (-) True G32245
TU47774 lncRNA upstream 33067 1289278 ~ 1291763 (-) True G32409
TU47832 lncRNA upstream 256834 1513045 ~ 1513312 (-) True G32440
TU47864 lncRNA upstream 281187 1537398 ~ 1539368 (-) True G32463
TU47861 lncRNA upstream 285015 1541226 ~ 1567149 (-) True G32462
TU47888 lncRNA upstream 350214 1606425 ~ 1607747 (-) True G32486
XM_043238201.1 mRNA downstream 49280 1145529 ~ 1175274 (-) True LOC122344672
XM_043238983.1 mRNA downstream 148777 1053144 ~ 1075777 (-) True prodhb
XM_043238185.1 mRNA downstream 255801 898109 ~ 968753 (-) True rtn4r
XM_043239926.1 mRNA upstream 15687 1271898 ~ 1287998 (-) False fbxw8
XM_043239925.1 mRNA upstream 15687 1271898 ~ 1287997 (-) True fbxw8
XM_043240910.1 mRNA upstream 35620 1291831 ~ 1307537 (-) False rnft2
XM_043240911.1 mRNA upstream 35620 1291831 ~ 1306371 (-) False rnft2
XM_043240913.1 mRNA upstream 35620 1291831 ~ 1306370 (-) True rnft2
TU47390 other downstream 974799 246943 ~ 249755 (-) False rictora
TU47359 other downstream 1188206 35777 ~ 36348 (-) True G32104
TU47358 other downstream 1189837 33779 ~ 34717 (-) True G32103
TU47356 other downstream 1200605 20139 ~ 23949 (-) True G32101
XR_006251108.1 other upstream 56393 1312604 ~ 1336184 (-) True castor1
XR_006251110.1 other upstream 56395 1312606 ~ 1336184 (-) False castor1
XR_006251109.1 other upstream 56395 1312606 ~ 1336184 (-) False castor1
XR_006251111.1 other upstream 66085 1322296 ~ 1336187 (-) False castor1
XR_006250937.1 other upstream 86395 1342606 ~ 1354414 (-) False lrrc74b

Expression Profile