RNA id: XM_043240444.1


Basic Information

Item Value
RNA id XM_043240444.1
length 1590
RNA type mRNA
GC content 0.45
exon number 11
gene id cenatac
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23045402 ~ 23049958 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTCGACGCCACGTGACGTCGCTATGTTTGGATAACGTCACTTGCAGTCGCTAAAAAAACTAACACAAAACAGCCAAATGGGAGCGTTTTATTGTTCCGTCTGCAGAAAAACGGATTTTTCTGGAAAAGGGCACATTTATGGGAAAAGCCATCAAAGCAAACTTAAAGTAATTCTTGTCAAATTTACGGAGAAGGTCAAAGAAGCGAAGCGGACCATTAAAAAGCCGCAGGTAGAGAAATACAGTCCTGATCATGAGGAGAAGTTCTGGTGTTACTGCTGCGCTCTGGAGCTGCCCAAACACGTGACCGACCGTAACATTAGTGTACTGTATGGAGGACTGCTGGAGCACATGAGCACCCCAGAGCACCGGACCAACACACACAAGTTCTGGTGGGACAATAAAGCAGATCCCAAACTGCGAGACAAGTTCATCGTAACTGAAGAGGAAACTGAGAGattcaAGTCTGAGGTTTCCAAGGCTCTGGAACAGTTTGAGGAAAAAGAGGATGTGTTTATTAAACAGCAAGCTGCAGTGATCCGTTCTCAGGAGCAGCACAGGCTGGAGGTCCTTCAGTCACTATCAGAGCCTGATCCAGAACTGGTACGTCCTGCTGAAGTGGACCAACACGGCAGTAACCGTACAGCCAGAAGCTCTCACAGTCACTCTTACGAAATGGAGGCACAACCCGGGCCGAGCCACGAGGATTTCACCTCACGCAGCCAGTGGAATAAACCAGGATTCGCCTTAACTTTCATTGGCTACCAGGACTCGTCCGGCAGCGGAAATGTTCACACTGGAGCTGTACCACCGTGGCTGCTGGAGGAGCCTGATGAAGCCTCAGCAAGTGGACAGCAGGAAGTGGGCCCCTCACTTCAGGAGTTCCTCAAACACAAGGAGCAGGAGAAGCTCAAGAAGCTTCCGCCAAACCGTGTGGGTGCAAACTTTGACCACAGCTCGCAGACTGACGCCAACTGGCTGCCGTCTTTTGGACGCGTGTGGAATAGCGGCAGGCGCTGGCAGTCGAGGCGTCAGTTTAGAGAGGAAGAGGCAAAAACCAGGGGGAAGAGGAAGTGGGAAGGTGATGGGAAAGCAACAAAGCAGCAAAAAGACTTCAGAAATGGAGAGTTATGAAATGAACGCCCCAAATATACTGGCCGCGTCGGGAGGATGGAATATTGTTTTCTCATATTGGGAATTGACCTCAGTTTTGAACGTGTTTGTTTCAGCTCGAGCATTTCTGAAACCACGTTGAAAGAATTTTTACGCGAGATGAATGTCATTCGTGTTTCCAGtttattgaatacatttttgctacagatgtgtaattttcttttttggtcataaatccaaaacaaaatattcttcCCACTCTCCTCAAAAGGTAAATGTGATAAAATGAAGACACAATGTGCAATATCTTCTTTCCATTTTGAACAATACATCAGTCAAATTTAATAGAATCTCATCTATTAGAGCTATTTCATGTTCTCAACGGAAAGCCAAGACCATATTAATgttcaataatataataaaatacctCAAACGTCtagacagaataataaaaatacagattacattaatattaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57350 lncRNA downstream 7932 23036457 ~ 23037470 (-) True G38747
TU57216 lncRNA downstream 168965 22873971 ~ 22876437 (-) True G38658
TU57176 lncRNA downstream 252349 22791690 ~ 22793053 (-) True G38634
TU57175 lncRNA downstream 252349 22791710 ~ 22793053 (-) False G38634
TU57041 lncRNA downstream 1004183 22038380 ~ 22041219 (-) False LOC122344815
TU57383 lncRNA upstream 77261 23127219 ~ 23131999 (-) False nrgna
TU57395 lncRNA upstream 295631 23345589 ~ 23345797 (-) True G38767
TU57397 lncRNA upstream 307616 23357574 ~ 23358147 (-) True G38769
XR_006250995.1 lncRNA upstream 552278 23602236 ~ 23605748 (-) True LOC122345364
TU57600 lncRNA upstream 616883 23666841 ~ 23669869 (-) True G38892
XM_043240907.1 mRNA downstream 134531 22906901 ~ 22910871 (-) True derl2
XM_043239962.1 mRNA downstream 144509 22883355 ~ 22900893 (-) False rabep1
XM_043239961.1 mRNA downstream 144509 22883355 ~ 22900893 (-) True rabep1
XM_043239969.1 mRNA downstream 170531 22844746 ~ 22874871 (-) False vps37d
XM_043240857.1 mRNA upstream 978 23050936 ~ 23054269 (-) False foxr1
XM_043240858.1 mRNA upstream 978 23050936 ~ 23054268 (-) True foxr1
XM_043240859.1 mRNA upstream 4988 23054946 ~ 23056425 (-) True zgc:194948
XM_043240856.1 mRNA upstream 7247 23057205 ~ 23064475 (-) True pou2f3
XM_043240855.1 mRNA upstream 7248 23057206 ~ 23066572 (-) False pou2f3
XR_006251119.1 other downstream 1005368 22039901 ~ 22040034 (-) True LOC122346224
XR_006251116.1 other downstream 1085518 21959785 ~ 21959884 (-) True LOC122346220
XR_006250934.1 other downstream 1161380 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other downstream 1161380 21878156 ~ 21884022 (-) False LOC122344823
XR_006251046.1 other downstream 1219297 21809013 ~ 21826105 (-) False akap10
TU57575 other upstream 552286 23602244 ~ 23604733 (-) False LOC122345364
TU57636 other upstream 701922 23751880 ~ 23756588 (-) True G38917
TU57720 other upstream 837345 23887303 ~ 23887680 (-) True G38973
TU57904 other upstream 1147747 24197705 ~ 24200496 (-) True G39113
XR_006250980.1 other upstream 1538070 24588028 ~ 24594116 (-) False anapc2

Expression Profile