RNA id: XM_043240447.1


Basic Information

Item Value
RNA id XM_043240447.1
length 1937
RNA type mRNA
GC content 0.48
exon number 17
gene id mccc2
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 16089065 ~ 16095337 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAACTTCAACGTTAACCGTTTGCTGTCCGAGCTGAGCGGCGAGGTCAGAGAACGTCGCCGGTTAAATTCGTCCTTAGACTTGTCCGTTAGAGGATGAACCATGATTCTGCACTATGTTAGACCTGTGGTTTCTCTCATTCGGAACAGGAGTGTAAATGCTGCAGTTTCCAGGTTATATCATGCTGACAAAGTGGCAACAGTGGGCTCGCAGCCCGATTCCCAATCTCCGGTCTTTCAGGAAAATTATGAGCGAATGCAAGCTCTGGTGAAGGAGTTGAAGGACAGAGCAGAGAAGATCAAACTCGGAGGTGGAGAAAAAGCAAGGAACCTGCATACATCCAGAGGAAAGCTCCTACCTCGGGAACGCATCGACAGACTGTTGGACCCTGGGTCTCCGTTTCTTGAGTTTTCTCAGTTCGCCGGCTATCAGTTATATGGTAGTGAGGAGGTTCCCGCGGGAGGCATAATCACTGGTATCGGTCGGGTGTCAGGGGTGGAATGTATTATAGTTGCGAATGATGCTACTGTCAAAGGTGGAACCTATTATCCGGTCACGGTGAAGAAGCACTTGCGCGCCCAAGAAATTGCACAGCAAAACCATCTACCATGCATATATCTGGTGGATTCTGGAGGAGCCAATTTACCCAGGCAGGCAGATGTGTTCCCAGACAGAGATCACTTCGGACGTATCTTCTTCAACCAGGCCCGCCTTTCCTCGGAGGGCATTTCACAGATCGCAGTTGTGATGGGCTCCTGTACAGCAGGGGGCGCCTATGTGCCTGCGATGGCTGACGAAAGCATCATAGTACGCAAACAAGGGACCATTTTCCTGGGTGGACCGCCGCTGGTAAAAGCCGCTACTGGTGAAGAGGTGTCTGCTGAAGACCTGGGAGGTGCAGACCTTCACTGCAGAAAGTCGGGTGTAACTGATCATTATGCCCTGGATGATAATCACGCCCTGCACCTTGCACGCAAAGCCATACGAAGCCTGAACTACAAGAAGAATCTTGACGTCACTGTTGAAGCTCCCGAGGCTCCTCTGTTTTCTGCCGATGAGCTTTATGGTATTGTGGGCGACAACCTCAAACGCAACTTTGACATTCGAGAGGTTATCGCTCGTATTGTTGATGGCAGTAAATTCGATGAATTCAAGGCATTCTATGGAGACACACTCGTCACAGGATTTGCACGGATATTTGGTTATCCTGTGGGAATTATTGGTAATAATGGTGTGCTGTTCTCAGAATCTGCAAAGAAGGGAACCCATTTCATTGAGCTTTGCTGTCAAAGAAACATTCCACTgctctttcttcaaaatattacgGGCTTCATGGTTGGCAGGGAATATGAGGCGGGAGGTATTGCTAAGGATGGAGCTAAAATGGTGACCGCTGTGGCCTGTGCCAATGTGCCTAAGATCACGGTCATCATTGGAGGATCGTATGGTGCGGGGAACTATGGCATGTGCGGCAGATCATATAGCCCCAGGTTCCTGTACATGTGGCCTAACTCCCGGATCTCTGTGATGGGAGGAGAGCAGGCAGCCACTGTGCTGGCCACCATAACTAAGGATCAAAAAGCCAGGGAAGGAAAAGagTTTACTGCAGAGCAGGAAGCTGCAATGAAAAAGCCAATTATCAAACGCTTTGAGGAGGAGGGAAACCCGTATTATTCCAGTGCCAGATTGTGGGATGATGGGATCATTGACCCTGCCGACACTCGCCTGGTCCTAGGCTTGAGCCTGAGTGCTGCTCTCAACGCCCCCACACAGAAAACACGCTTCGGGGTCTTCAGAATGTAAATCTGGTTTTGTAAAGATTagaagttttaaatgaaatcgatttactttgtttttggGGGGCAGTACACACTAACTTTATAGActtgttttgtctttatatgtttgaaaataacagtaaataaatctgtaaaaacaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG:

id description
K01969 E6.4.1.4B; 3-methylcrotonyl-CoA carboxylase beta subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54726 lncRNA downstream 110325 15950331 ~ 15978740 (-) False G37092
TU54738 lncRNA downstream 150229 15938120 ~ 15938836 (-) True G37098
TU54729 lncRNA downstream 178192 15906283 ~ 15910873 (-) True G37093
TU54885 lncRNA upstream 235594 16330931 ~ 16332077 (-) True G37212
TU54932 lncRNA upstream 294587 16389924 ~ 16460289 (-) True G37239
TU54933 lncRNA upstream 294587 16389924 ~ 16482086 (-) False G37239
TU54935 lncRNA upstream 294587 16389924 ~ 16458389 (-) False G37239
TU54948 lncRNA upstream 341132 16436469 ~ 16443757 (-) True G37247
XM_043238442.1 mRNA downstream 1655 16084818 ~ 16087410 (-) True smn1
XM_043238849.1 mRNA downstream 22204 16017834 ~ 16066861 (-) False rtkna
XM_043238846.1 mRNA downstream 22211 16014786 ~ 16066854 (-) False rtkna
XM_043238847.1 mRNA downstream 35163 16014786 ~ 16053902 (-) True rtkna
XM_043238848.1 mRNA downstream 47037 16014786 ~ 16042028 (-) False rtkna
XM_043240822.1 mRNA upstream 411 16095748 ~ 16114424 (-) False LOC122346134
XM_043240821.1 mRNA upstream 411 16095748 ~ 16114424 (-) True LOC122346134
XM_043239220.1 mRNA upstream 20053 16115390 ~ 16138163 (-) False si:ch211-204c21.1
XM_043239219.1 mRNA upstream 20053 16115390 ~ 16138161 (-) False si:ch211-204c21.1
XM_043239218.1 mRNA upstream 20053 16115390 ~ 16138161 (-) True si:ch211-204c21.1
TU54710 other downstream 233257 15854934 ~ 15855808 (-) True cxcl11.1
TU54705 other downstream 242029 15846036 ~ 15847036 (-) True LOC122345695
TU54668 other downstream 360957 15726855 ~ 15728108 (-) False emc6
TU54666 other downstream 361155 15726782 ~ 15727910 (-) False emc6
TU54865 other upstream 158812 16254149 ~ 16256739 (-) False LOC122344710
TU54936 other upstream 281171 16376508 ~ 16378495 (-) False LOC122344728
TU54976 other upstream 501518 16596855 ~ 16633121 (-) True G37258
TU54999 other upstream 591923 16687260 ~ 16713167 (-) True G37277
TU54996 other upstream 592078 16687415 ~ 16713167 (-) False G37277

Expression Profile