RNA id: XM_043240470.1


Basic Information

Item Value
RNA id XM_043240470.1
length 947
RNA type mRNA
GC content 0.43
exon number 6
gene id sat2b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24749282 ~ 24751282 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aacagTCCAGTGGTGTGATATGTAATAAGTACTAGCACTTAATAGAAAAGATAGCCTATTAGCATAAAAACAGATATAACTACGGCTTATGGGTTAAATGACGAAGAGTAAACAAGCAGAGGCTGCGCAAAATGTGTGCTCTATGACGCTCTtgaacacactctctctctctcgttggACTGACGCGTGCATACAACCGGCTCTTTAGTGCAATATAGCTGACTGACCAGAGCCAGTGGAGGAGATCGGGAAGCGACGTTTGCATATGCAAAATGAAGTTTTCTATTTGTGCAGCCAAACCTGAAGACTGTCGAGATATAGCGCGTATGATTATGgaatTGGCCGTTTATGAAAAGATGCCTGACCAAGTGAATATTTCCCATGAagTGTTGGAGAGGGATGGATTTGGCCCCAATCCTTTTTACCAGTGTCTTATAGCTGAGGTACCTGAGGAGCACCGGTCTAAAGATGGACATACCAAGGTGGGCTATGCTCTCTTCTTCTATACGTATAGCACTTGGAAAGGGAGGACCGTGTATATGGAAGATCTGTATGTGATGCCACAGTTCAGAGGGAAAGGCATTGGAAAGGCTTTAATGGCAACTGTTGCCAAAGTGGCCAAGGAGCAGCATTGTGTACGTTTACAGCTCTCTGTATTAGACTGGAATAAACCCTCTCTAGACTTTTATTTGGCTAAAGGTGCAGAGGACCTCACAGCTAAAGAGGGCTGGCATTTTCTCCGCTTTCATGGAACAGCTCTGGATAATCTAGCACAGGAAGCACCTTGAAGAACATTTAGACAATAAACGAATTGCAAATACAGTTTGTTGTAGTTGGAATAGTTCAAGCTTCTGTCCTCAAATTGCATTTGTCCCTATTGTAACTGAACTGAACCTTCTGATTCATTGTGCACAGAgcaacatttataaaacaatgttGTAAAAGTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008080 N-acetyltransferase activity molecular_function

KEGG:

id description
K00657 speG, SAT; diamine N-acetyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58240 lncRNA downstream 706 24746672 ~ 24748576 (-) True naa38
TU58251 lncRNA downstream 17207 24731639 ~ 24732075 (-) True G39341
TU58247 lncRNA downstream 18891 24730212 ~ 24730391 (-) True G39337
XR_006250987.1 lncRNA downstream 124404 24623559 ~ 24624878 (-) True LOC122345299
TU58207 lncRNA downstream 124430 24623853 ~ 24624852 (-) False LOC122345299
TU58257 lncRNA upstream 1800 24753082 ~ 24753322 (-) True G39347
TU58223 lncRNA upstream 2922 24754204 ~ 24758627 (-) True LOC122345923
TU58269 lncRNA upstream 89463 24840745 ~ 24846363 (-) True G39356
TU58270 lncRNA upstream 110661 24861943 ~ 24863191 (-) True G39357
TU58278 lncRNA upstream 161364 24912646 ~ 24912939 (-) True G39365
XM_043240471.1 mRNA downstream 672 24747031 ~ 24748610 (-) False naa38
XM_043240278.1 mRNA downstream 25373 24714443 ~ 24723909 (-) True LOC122345804
XM_043239693.1 mRNA downstream 59092 24685346 ~ 24690190 (-) True rangrf
XM_043239694.1 mRNA downstream 59148 24685346 ~ 24690134 (-) False rangrf
XM_043238393.1 mRNA downstream 87682 24656827 ~ 24661600 (-) True bspry
XM_043240457.1 mRNA upstream 2920 24754202 ~ 24758668 (-) False LOC122345923
XM_043240635.1 mRNA upstream 8196 24759478 ~ 24782648 (-) False taf6
XM_043240636.1 mRNA upstream 8196 24759478 ~ 24782648 (-) True taf6
XM_043240627.1 mRNA upstream 63327 24814609 ~ 24903289 (-) False LOC122346005
XM_043240626.1 mRNA upstream 63327 24814609 ~ 24903289 (-) True LOC122346005
XR_006250980.1 other downstream 155166 24588028 ~ 24594116 (-) False anapc2
TU57904 other downstream 548786 24197705 ~ 24200496 (-) True G39113
TU57720 other downstream 861602 23887303 ~ 23887680 (-) True G38973
TU57636 other downstream 992694 23751880 ~ 23756588 (-) True G38917
TU57575 other downstream 1144549 23602244 ~ 23604733 (-) False LOC122345364
unassigned_transcript_960 other upstream 166538 24917820 ~ 24917893 (-) True trnan-guu_1
unassigned_transcript_961 other upstream 166723 24918005 ~ 24918076 (-) True trnak-cuu_4
unassigned_transcript_962 other upstream 172866 24924148 ~ 24924220 (-) True trnak-cuu_5
unassigned_transcript_963 other upstream 175698 24926980 ~ 24927051 (-) True trnak-cuu_6
unassigned_transcript_964 other upstream 181624 24932906 ~ 24932978 (-) True trnak-cuu_7

Expression Profile