RNA id: XM_043240475.1


Basic Information

Item Value
RNA id XM_043240475.1
length 1203
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC122345935
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1524902 ~ 1526918 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGACTGCATCCCTGAAGCTTTTTTGTGTGCCACATCCGACAGTAGTGATGACATCCTCCAGGATACAGTGTCTGCCATGTCCAGCTGTAGCAATTACTTCTGCCAAGCTTCAGTCTCTCTCATGTCCGACAGTACCGATGACTTCCTTTCAACTTGCTGTGACATGTCTGACTGTAGTGTTGATGCTCCTGAAGCTAGAGTCTCTCAGACAGAGTACACTGTGCCACCTCAGTCAAGCCAGCCGCAGGATGAGTCAAGATTTATTGACATAAATTCATGCTGTTATGAAATCGGCAGTCAGCTGGGTGAAGGAAGCTTTGGTACCGTTTATGCAGCGACTCGTTTGGATGATGGCCTACAGGTGGTGATAAAGTTTGTATCCAACAGGAACAACAAGTTCATCGTCATTGACGGCTGTTCCAAGCCTCTTCCTCTGGAGGTCGCTCTGTTGATTCTGGCAAACGAAGGCCCTACGGTGAAGGAAATCATCCAGCTTCTGGACTGGCGGGTGGAGGCTGACCACTACATGTTGGTGATGGAGCGGCCCATGCCCTGTGAGGAACTGAACTGGTTTCTCCTCCGGCAAGTGGTGACTCTTAAAGAAGGCGTGGCACGGGTCATCATGCAGCAGGTAACATTCGCAGCCCAGACCTGCTGCAGACGGGGAGTGTTGCACAGGGATATTAAGATGGAAAACATCCTCATCAACCCGGACACACTCAGAGTCAAATTGATTGACTTTGGGTGCGGTGATTTTCTCACCGATGCGGCGTACACATCCTTTGCTGGCACAAGAGAGTACTGCCCTCCTGAATACCTGGTGAGCGGCCAGTACCACGGAGAACCAGCCACAGTGTGGTCTTTGGGGATCGTCTTGTTTGCCTTGCTGTGTGGGGATTTCCCAAAGACACGTGACCTGGAAAAGATCCGCAGCAACACCTGGACCAAAGATGGCTTATCAAAAGAATGCTGCGATATTATTTGTCGCTGTCTGCAGCTTGACCCGAAGCAGCGGATTGAGCTGAAGAACCTCAGTCTCCACGACTGGTTCAGTGTGACAGGAAACCAGTGCTGCTTCCAGCCCCCAGAAATTCACAGAAGTGGAGAAATGTACCCTGATGGAAATATTCAGGGCTGTTCCGGTCCTCAGCCCAGAGctgtttaatagaaattataattagataagatagataaatagatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47832 lncRNA downstream 11590 1513045 ~ 1513312 (-) True G32440
TU47774 lncRNA downstream 233139 1289278 ~ 1291763 (-) True G32409
TU47599 lncRNA downstream 472723 1051867 ~ 1052179 (-) True G32292
TU47582 lncRNA downstream 645760 877910 ~ 879142 (-) True G32275
TU47578 lncRNA downstream 702073 820615 ~ 822829 (-) False LOC122344906
TU47864 lncRNA upstream 10480 1537398 ~ 1539368 (-) True G32463
TU47861 lncRNA upstream 14308 1541226 ~ 1567149 (-) True G32462
TU47888 lncRNA upstream 79507 1606425 ~ 1607747 (-) True G32486
TU47992 lncRNA upstream 139780 1666698 ~ 1666906 (-) True G32572
TU48000 lncRNA upstream 232726 1759644 ~ 1759857 (-) True G32579
XM_043240696.1 mRNA downstream 5036 1512140 ~ 1519866 (-) True LOC122346041
XM_043238216.1 mRNA downstream 12713 1506685 ~ 1512189 (-) False vsig10
XM_043238215.1 mRNA downstream 12713 1506685 ~ 1512189 (-) True vsig10
XM_043239847.1 mRNA downstream 18670 1501467 ~ 1506232 (-) True wsb2
XM_043240640.1 mRNA downstream 30215 1424404 ~ 1494687 (-) False ksr2
XM_043238410.1 mRNA upstream 16500 1543418 ~ 1564546 (-) False LOC122344835
XM_043238411.1 mRNA upstream 16500 1543418 ~ 1564433 (-) True LOC122344835
XM_043238289.1 mRNA upstream 42486 1569404 ~ 1570066 (-) True cldn26
XM_043240429.1 mRNA upstream 45230 1572148 ~ 1579628 (-) True lztr1
XM_043240226.1 mRNA upstream 70929 1597847 ~ 1603060 (-) True p2rx2
XR_006250937.1 other downstream 170488 1342606 ~ 1354414 (-) False lrrc74b
XR_006251111.1 other downstream 188715 1322296 ~ 1336187 (-) False castor1
XR_006251108.1 other downstream 188718 1312604 ~ 1336184 (-) True castor1
TU47988 other upstream 147572 1674490 ~ 1693974 (-) False ypel1
TU48139 other upstream 439719 1966637 ~ 1967748 (-) False G32676
TU48140 other upstream 439719 1966637 ~ 1967748 (-) True G32676
TU48163 other upstream 493190 2020108 ~ 2022894 (-) False LOC122344636
TU48378 other upstream 969586 2496504 ~ 2554146 (-) True G32857

Expression Profile