RNA id: XM_043240478.1


Basic Information

Item Value
RNA id XM_043240478.1
length 1502
RNA type mRNA
GC content 0.56
exon number 15
gene id ass1
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30622204 ~ 30644747 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGGGGCTGAGCGCATGTGGGTAATAACGGAGCACGCGGACTCGAGAGGATCAACTGGATGTGGATCTGATCCGGTCTCGTCTGGTCTGTGTCTCGCTTTTCTTTCCTGCTGGGTTTAGCTTCCTGATTTTGAAACTTTAGCCCGGTCCCTGAATCTCCGTCCCTCACAGAAGCGGTCAGATGTCGAAGGGCTCGGTGGTTCTGGCCTACAGCGGGGGTCTGGACACCTCCTGTATCCTGCTGTGGCTGAAGGAGCAGGGCTATGAAGTCATCGCTTACCTGGCCAACATCGGGCAGAACGAGGACTTTGATGCTGCGCGGAAGAAAGCAGAGAAACTTGGAGCcaagaaggtgttgaTCGAGGACCTGCGCTCAGAGTTTGTGGAGGAGTTCGTGTGGTCAGCGGTGCGGGCCGGAGCGGTGTATGAGGACCGTTACCTGCTGGGCACGTCTCTGGCCCGTCCCTGCATCGCCCGCAGACAGGTGCAGGTCGCCCGGAGAGAAGGAGCGCAGTACGTCTCCCACGGAGCCACGGGGAAGgggAATGACCAGGTCCGCTTCGAGCTGGCGTGTTACTCTCTCTATCCTTCGGTTCAGGTCATCGCTCCGTGGAGGATCCCAGAGTTTTACCAGCGCTTCCGAGGCCGGAGCGACCTGATGGAGTACGCAGAGaaaCACGGTATCCCCGTCCCTGTGAGTCCGAAGGCGCCGTGGAGCATGGACGCAAACCTCATGCACATCAGTTACGAGTCTGGAGTTCTGGAGAATCCCAAGAATCACGCGCCTCCAGATCTCTACCAGATGACCAAGAACCCGGAAGACGCCCCCGAGGAGCCAGACGTGCTGGAGATCCACTTCTCCAAAGgtgttCCAGTCAGAGTCAGTCATGTGAAGGAGGGAGTGTGTAAAGAGACTCCGCTGGAGATCTTCTGCTATCTGAATGAGATCGGTGGAAAGCACGGTGTGGGGAGAATCGATATTGTGGAGAACCGCTTCATTGGCATGAAGTCCAGAGGTATCTACGAAACCCCCGGAGGAACCATCCTGCTTCATGCTCATCTGGACATCGAGGCCTTCACGATGGACCGAGAGGTTCGGAAGATCAAACAGAGCCTCAGCATCAAGTTCTCCGAGCTCGTGTATAACGGGTTCTGGTTCAGTCCGGAGTGTGAGTTTGTCCGTCACTGTGTGGATAAATCCCAGGAGAACGTGGAGGGGTGTGTGCAGCTCTCCGTCTTCAAGGGTCAGGTGTACATCCTCGGCCGAGAGTCACCCACATCCCTGTATAACGAGGAGCTGGTCAGCATGGATGTTCAGGGAGACTATGACCCCTGCGACGCCTCTGGATTCATCCGGGTCAACGCCGTCAGGCTTCGGGAACACAACCGTCTGCAGGGAGAAGCCCTGAAGAAGCCCTGAAGATCTGATCCACGTCATTCAGTCAGCCGTTTCTGAGCGTGTACCGGTCTCTGAAGAAATCTGATTAAACACCAAACCCATA

Function

GO:

id name namespace
GO:0000050 urea cycle biological_process
GO:0006526 arginine biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004055 argininosuccinate synthase activity molecular_function

KEGG:

id description
K01940 argG, ASS1; argininosuccinate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60227 lncRNA downstream 31564 30590197 ~ 30590640 (-) True G40701
TU60224 lncRNA downstream 52104 30567251 ~ 30570100 (-) True G40698
TU60183 lncRNA downstream 56048 30565684 ~ 30566156 (-) True G40672
TU60181 lncRNA downstream 57827 30564117 ~ 30564377 (-) True G40670
TU60202 lncRNA downstream 103749 30516065 ~ 30518455 (-) True G40684
TU60254 lncRNA upstream 34421 30679158 ~ 30731238 (-) True G40711
XR_006251069.1 lncRNA upstream 64036 30708773 ~ 30710678 (-) True LOC122345983
TU60290 lncRNA upstream 64133 30708870 ~ 30709891 (-) False LOC122345983
TU60247 lncRNA upstream 75455 30720192 ~ 30725226 (-) True G40708
TU60299 lncRNA upstream 125977 30770714 ~ 30772024 (-) True G40739
XM_043240921.1 mRNA downstream 9095 30590843 ~ 30613109 (-) True fubp3
XM_043238652.1 mRNA downstream 41876 30576288 ~ 30580328 (-) True LOC122344972
XM_043238655.1 mRNA downstream 79764 30540497 ~ 30542440 (-) False LOC122344973
XM_043238653.1 mRNA downstream 79764 30540497 ~ 30542440 (-) True LOC122344973
XM_043240129.1 mRNA downstream 84289 30535834 ~ 30537915 (-) True LOC122345715
XM_043239943.1 mRNA upstream 1549 30646286 ~ 30652310 (-) True surf4
XM_043239944.1 mRNA upstream 8426 30653163 ~ 30655957 (-) True surf2
XM_043238233.1 mRNA upstream 15382 30660119 ~ 30672096 (-) True ciz1a
XM_043240578.1 mRNA upstream 89367 30734104 ~ 30754940 (-) False golga2
XM_043240576.1 mRNA upstream 89367 30734104 ~ 30754940 (-) False golga2
TU60233 other downstream 9063 30604844 ~ 30613141 (-) False fubp3
TU60232 other downstream 18711 30600901 ~ 30603493 (-) False fubp3
TU59790 other downstream 528691 30091949 ~ 30093513 (-) False rnf170
TU59791 other downstream 528691 30091949 ~ 30093513 (-) False rnf170
TU59650 other downstream 695371 29926385 ~ 29926833 (-) False LOC122344966
TU60253 other upstream 6204 30650941 ~ 30696688 (-) False G40711
TU60266 other upstream 144896 30789633 ~ 30792719 (-) True G40713
TU60335 other upstream 174778 30819515 ~ 30826358 (-) True G40752
TU60340 other upstream 174778 30819515 ~ 30826358 (-) False G40752
XR_006251005.1 other upstream 1057716 31702453 ~ 31711737 (-) True apooa

Expression Profile