RNA id: XM_043240485.1


Basic Information

Item Value
RNA id XM_043240485.1
length 2742
RNA type mRNA
GC content 0.50
exon number 22
gene id LOC122345940
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21424370 ~ 21672896 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggagaggagagagagggatcgGCCGTCAGCatggaggaggatgaggaggaggcgTTGGGGTTTTTGGACAAAGTTCTGGAGGATGAAGATGTGTTTGACAGTGAGATGGACTTGGACAGTCCGTTCACACCGGTGGACTTCAGGACGTTCAAGgGAGACATAGAGAAAGGTCTGGAGATGAAGAAACTGGTTCTGTCTGGTTTTCTGGCCAGTGAGGAGATCTATATTAACCAGCTAGAGGCGTTGCTGCTGCCCATGAAACCTCTTAAAGCCACAGCTACTACATCAAAGCCAGTGCTGACAATGGAGCAGATTGACACTATTTTCTTCATGATCCAAGACATCTTTGAGATACATAAGGAGTTTTATGATGCTCTTTCTCCCAACATTCAGCAGTGGGATGAGAAGGTCACTGTCGGACATCTTTTCCAGAAACTGGCCAGTCAGCTTGGTGTGTATAAAGCTTTTGTGGACAACTATAAAGTGGCAGTGGAGACAGCAGATAAATGCAGCCAGGCCAACATCCAGTTTCAGAAGATCTCTGAGAATCTGAAGGTTAAAGGTCCTAAAGAATCCAAGGACTACCCCACATCCTCCACCATGGAAGCTCTCCTCTACAAGCCTATTGACCGTGTCACTCGCAGCACTCTAGTCTTGCATgaCTTATTGAAACACACTCCTAAGGATCATCCAGACTTCCCTCTGCTTCAGGATGCTCTGAGAATATCCCAGAACTTCCTGTCCAGCATCAATGAAGAGATCGACCCACGCAGGACTGCCGTGACCACACCGAAGGGAGAGGTTCGTCAGCTGGTGAAGGACGGCTTCCTGGTGGAGGTGTCGGAGGGGACGCGCAAACTCCGTCATGTCTTTCTCTTCACAGACCTTCTGCTCTGTGCCAAGATGAAAAAGACGGCAGTTGGgagaCATCAGCAGTACGAGTGTAAATGGTACATCCCTCTGGCTGATCTGAGCTTTCAGACTCTGGATGACTCGGATTCTCTCCCTCACGTTCAGACGCTTCCTGAGCATGAGATTGAGGAGATGAAGATCAAGATCTCCACCATCAAAAGCGAGATCCAGAAAGAGAAGAAAGCACAGAAGGGTCAGAGTCGTAATGTGGATCGTCTGAGGAAGAAGATGAATGAGCAGGAGTCGTGTCTGCTGTTACACTCCCCCACCATCCCCTTCCGCATCCACAACAAACACGGCAAGagcTACCTGTTCCTGCTGTCCTCAGATTACGAGCGGTCAGAATGGCGGGAGAGCATTCAGAAACTGCAGAAGAAAGacctGCAGGCCTGTGTGTTGAGTTCAGTAGAGCTACAAGTGTTGACTGGCTCCTGCTTCAAACTTCGAACTGTCCACAACATCCCTGTCACCACCAACAAAGACGATGAGGAATCTCCTGGTCTGTACGGCTTCCTGCATGTGATCGTCCATAAAGCCATGGGATTCAAAGAATCTGCCAATCTGTACTGTACCCTGGAGGTGGACTCTTTTGGCTACTTCGTCAGTAAGGCCAAAACACGTGTGTTCAGAGACACTACAGAACCACAGTGGAATGAGGAGTTCGAAATAGAGCTGGAGGGCTCTCAGTGTCTGCGGATCCTGTGCTACGAGAAGTGTTACGACAAATCAAAGCTCAATAAGGACGATAATGAGATTGTGGACAAGATCATGGGAAAGGGACAAGTACAGCTGGACCCACAGACCGTGCAGTCCAAAAACTGGCATATGGATGTCATAGAAATGAATGGGATTAAAGTGGAGTTTTCCATGAAGTTTACCAGTCGGGACTTAAGTTTAAAGCGGACGCCTTCTAAGAAACAGAGCGGCGTGTTTGGGGTTAAAATCAGCGTGGTAACAAAGCGCGAGCGCTCCAAGGTGCCTTACATTGTGCGGCAGTGCATTGAGGAGGTGGAGAAGAGAGGGATTGATGAAGTGGGCATTTACAGGATCTCCGGAGTGGccacagacatccaggccctcaAAGCAGCGTTTGACGCCAaTACCAAAGATATCCTGGTGATGTTGAGTGACATGGACATTAACGCCATCGCGGGGACactgaaattatatttcaggGAGCTGCCAGAACCTCTTCTCACAGACCGGCTGTATCCGGCCTTCATGGAGGGCACTGCTCTATCAGATCCTGCAGCAAAGGAGAACTGCATGATGCATCTGCTGCGGTCACTACCAGACCCCAATCTCATCACCTTCCTCACCCTACTGGAACACCTCAAGAGGGTGGCAGAGAAGGAGCCGGTCAATAAGATGTCTCTGCATAATTTGGCCACAGTGTTCGGCCCCACTCTGCTGAGACCGTCAGAGTCAGAGAGCAGCAAGGCCCACATCACGCTGGCCTCTGATATCTGGTCACATGATGTCATGGCACAGgtTCAGGTATTGCTGTACTATCTGCAGCATCCGCCCATATCCTTCGCTGAGCTGAAGAAGAACACACTCTATTTCTCAACTGACGTCTAACTCCAACAAATGACTCCTTTCCTCTCAAACgtcgtctttttttttgtgtacaaagCCAACGGTCCGGCGGGGGGGACAGCGAGTGACTGTGGCCACTCTCCCCTGCGTTTGTCGTCTCCGGTCATGTTCATGTGTAAAAGGAGCTCGCGCTTCGCTTCAGCGCGGAGAAGAGCTGCAGCCAGAGGAAGACCAAGATACAGCATCACCTTATACAGACGCTGCACTtctcacacccacacacacgtcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56726 lncRNA downstream 10101 21410985 ~ 21414269 (-) True G38347
TU56717 lncRNA downstream 45188 21172678 ~ 21379182 (-) True G38342
TU56718 lncRNA downstream 45188 21172678 ~ 21379182 (-) False G38342
XR_006251054.1 lncRNA downstream 62247 21361011 ~ 21362123 (-) True LOC122345899
TU56699 lncRNA downstream 272527 21150208 ~ 21151843 (-) False G38334
TU56961 lncRNA upstream 227751 21696328 ~ 21697193 (-) True G38507
TU56970 lncRNA upstream 352899 21821476 ~ 21829707 (-) False G38510
TU56971 lncRNA upstream 352899 21821476 ~ 21829707 (-) False G38510
TU56968 lncRNA upstream 358746 21827323 ~ 21829707 (-) True G38510
TU56967 lncRNA upstream 359038 21827615 ~ 21829707 (-) False G38510
XM_043239237.1 mRNA downstream 112969 21296259 ~ 21311401 (-) True LOC122345264
XM_043239238.1 mRNA downstream 128798 21294121 ~ 21295572 (-) True nanos2
XM_043239134.1 mRNA downstream 130561 21263648 ~ 21293809 (-) True zswim7
XM_043239135.1 mRNA downstream 130561 21274690 ~ 21293809 (-) False zswim7
XM_043239133.1 mRNA downstream 244389 21177382 ~ 21179981 (-) True LOC122345218
XM_043239118.1 mRNA upstream 209662 21678239 ~ 21685667 (-) True aspa
XM_043239117.1 mRNA upstream 217623 21686200 ~ 21695167 (-) True pho
XM_043238169.1 mRNA upstream 235624 21704201 ~ 21808104 (-) True LOC122344645
XM_043240340.1 mRNA upstream 340436 21809013 ~ 21826105 (-) False akap10
XM_043240339.1 mRNA upstream 340436 21809013 ~ 21826105 (-) True akap10
TU56747 other downstream 55322 21364238 ~ 21369048 (-) True G38359
TU56460 other downstream 488277 20929150 ~ 20936093 (-) False LOC122345723
TU56325 other downstream 1296980 20125589 ~ 20127390 (-) True G38140
TU56161 other downstream 1368572 20051659 ~ 20055798 (-) True G38058
XR_006251079.1 other downstream 1488794 19868814 ~ 19935576 (-) False kcnt1b
TU56743 other upstream 144111 21612688 ~ 21619583 (-) True G38355
XR_006251046.1 other upstream 340436 21809013 ~ 21826105 (-) False akap10
XR_006250934.1 other upstream 409579 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other upstream 409579 21878156 ~ 21884022 (-) False LOC122344823
XR_006251116.1 other upstream 491208 21959785 ~ 21959884 (-) True LOC122346220

Expression Profile